Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2644.1

Experiment: 1600 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.2640.1 and Xcc-8004.2642.1 are separated by 96 nucleotidesXcc-8004.2642.1 and Xcc-8004.2643.1 are separated by 27 nucleotidesXcc-8004.2643.1 and Xcc-8004.2644.1 are separated by 9 nucleotidesXcc-8004.2644.1 and Xcc-8004.2645.1 overlap by 4 nucleotides Xcc-8004.2640.1: Xcc-8004.2640.1 - Adsorption protein, at 2,539,939 to 2,540,988 Xcc-8004.2640.1 Xcc-8004.2642.1: Xcc-8004.2642.1 - hypothetical protein, at 2,541,085 to 2,541,213 Xcc-8004.2642.1 Xcc-8004.2643.1: Xcc-8004.2643.1 - Minor coat protein, at 2,541,241 to 2,541,486 Xcc-8004.2643.1 Xcc-8004.2644.1: Xcc-8004.2644.1 - hypothetical protein, at 2,541,496 to 2,541,792 Xcc-8004.2644.1 Xcc-8004.2645.1: Xcc-8004.2645.1 - probable phage replication protein NMA0782, at 2,541,789 to 2,542,898 Xcc-8004.2645.1 Position (kb) 2541 2542Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2540.510 kb on + strand, within Xcc-8004.2640.1at 2540.511 kb on - strand, within Xcc-8004.2640.1at 2540.511 kb on - strand, within Xcc-8004.2640.1at 2540.511 kb on - strand, within Xcc-8004.2640.1at 2540.511 kb on - strand, within Xcc-8004.2640.1at 2540.511 kb on - strand, within Xcc-8004.2640.1at 2540.514 kb on + strand, within Xcc-8004.2640.1at 2540.514 kb on + strand, within Xcc-8004.2640.1at 2540.514 kb on + strand, within Xcc-8004.2640.1at 2540.514 kb on + strand, within Xcc-8004.2640.1at 2540.514 kb on + strand, within Xcc-8004.2640.1at 2540.514 kb on + strand, within Xcc-8004.2640.1at 2540.515 kb on - strand, within Xcc-8004.2640.1at 2540.515 kb on - strand, within Xcc-8004.2640.1at 2540.515 kb on - strand, within Xcc-8004.2640.1at 2540.515 kb on - strand, within Xcc-8004.2640.1at 2540.516 kb on + strand, within Xcc-8004.2640.1at 2540.516 kb on + strand, within Xcc-8004.2640.1at 2540.595 kb on + strand, within Xcc-8004.2640.1at 2540.595 kb on + strand, within Xcc-8004.2640.1at 2540.667 kb on + strand, within Xcc-8004.2640.1at 2540.700 kb on + strand, within Xcc-8004.2640.1at 2540.700 kb on + strand, within Xcc-8004.2640.1at 2540.700 kb on + strand, within Xcc-8004.2640.1at 2540.700 kb on + strand, within Xcc-8004.2640.1at 2540.701 kb on - strand, within Xcc-8004.2640.1at 2540.701 kb on - strand, within Xcc-8004.2640.1at 2540.701 kb on - strand, within Xcc-8004.2640.1at 2540.948 kb on + strandat 2541.552 kb on - strand, within Xcc-8004.2644.1at 2541.603 kb on - strand, within Xcc-8004.2644.1at 2541.704 kb on + strand, within Xcc-8004.2644.1at 2541.704 kb on + strand, within Xcc-8004.2644.1at 2541.807 kb on + strandat 2541.807 kb on + strandat 2541.807 kb on + strandat 2541.808 kb on - strandat 2542.024 kb on + strand, within Xcc-8004.2645.1at 2542.229 kb on + strand, within Xcc-8004.2645.1at 2542.237 kb on + strand, within Xcc-8004.2645.1at 2542.238 kb on - strand, within Xcc-8004.2645.1at 2542.238 kb on - strand, within Xcc-8004.2645.1at 2542.238 kb on - strand, within Xcc-8004.2645.1at 2542.352 kb on - strand, within Xcc-8004.2645.1at 2542.500 kb on - strand, within Xcc-8004.2645.1at 2542.510 kb on + strand, within Xcc-8004.2645.1at 2542.510 kb on + strand, within Xcc-8004.2645.1at 2542.604 kb on - strand, within Xcc-8004.2645.1at 2542.604 kb on - strand, within Xcc-8004.2645.1at 2542.604 kb on - strand, within Xcc-8004.2645.1at 2542.746 kb on + strand, within Xcc-8004.2645.1at 2542.746 kb on + strand, within Xcc-8004.2645.1at 2542.746 kb on + strand, within Xcc-8004.2645.1at 2542.746 kb on + strand, within Xcc-8004.2645.1at 2542.747 kb on - strand, within Xcc-8004.2645.1at 2542.747 kb on - strand, within Xcc-8004.2645.1at 2542.747 kb on - strand, within Xcc-8004.2645.1at 2542.747 kb on - strand, within Xcc-8004.2645.1at 2542.782 kb on + strand, within Xcc-8004.2645.1at 2542.783 kb on - strand, within Xcc-8004.2645.1

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Per-strain Table

Position Strand Gene LocusTag Fraction 1600 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)
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2,540,510 + Xcc-8004.2640.1 0.54 +0.5
2,540,511 - Xcc-8004.2640.1 0.54 -2.3
2,540,511 - Xcc-8004.2640.1 0.54 -0.5
2,540,511 - Xcc-8004.2640.1 0.54 +1.3
2,540,511 - Xcc-8004.2640.1 0.54 -0.3
2,540,511 - Xcc-8004.2640.1 0.54 +1.6
2,540,514 + Xcc-8004.2640.1 0.55 -0.6
2,540,514 + Xcc-8004.2640.1 0.55 +0.9
2,540,514 + Xcc-8004.2640.1 0.55 -2.0
2,540,514 + Xcc-8004.2640.1 0.55 +0.4
2,540,514 + Xcc-8004.2640.1 0.55 +1.0
2,540,514 + Xcc-8004.2640.1 0.55 +0.5
2,540,515 - Xcc-8004.2640.1 0.55 +0.6
2,540,515 - Xcc-8004.2640.1 0.55 -0.1
2,540,515 - Xcc-8004.2640.1 0.55 -0.1
2,540,515 - Xcc-8004.2640.1 0.55 -2.0
2,540,516 + Xcc-8004.2640.1 0.55 +0.2
2,540,516 + Xcc-8004.2640.1 0.55 -1.4
2,540,595 + Xcc-8004.2640.1 0.62 +1.1
2,540,595 + Xcc-8004.2640.1 0.62 +2.9
2,540,667 + Xcc-8004.2640.1 0.69 +0.6
2,540,700 + Xcc-8004.2640.1 0.72 -3.1
2,540,700 + Xcc-8004.2640.1 0.72 -1.8
2,540,700 + Xcc-8004.2640.1 0.72 -0.5
2,540,700 + Xcc-8004.2640.1 0.72 -1.5
2,540,701 - Xcc-8004.2640.1 0.73 +1.0
2,540,701 - Xcc-8004.2640.1 0.73 +2.6
2,540,701 - Xcc-8004.2640.1 0.73 +0.4
2,540,948 + +0.6
2,541,552 - Xcc-8004.2644.1 0.19 -2.3
2,541,603 - Xcc-8004.2644.1 0.36 -1.3
2,541,704 + Xcc-8004.2644.1 0.70 -2.3
2,541,704 + Xcc-8004.2644.1 0.70 -0.6
2,541,807 + -0.3
2,541,807 + +0.6
2,541,807 + -2.5
2,541,808 - +0.7
2,542,024 + Xcc-8004.2645.1 0.21 +0.4
2,542,229 + Xcc-8004.2645.1 0.40 -0.2
2,542,237 + Xcc-8004.2645.1 0.40 -0.0
2,542,238 - Xcc-8004.2645.1 0.40 +2.3
2,542,238 - Xcc-8004.2645.1 0.40 +0.2
2,542,238 - Xcc-8004.2645.1 0.40 -1.0
2,542,352 - Xcc-8004.2645.1 0.51 +0.3
2,542,500 - Xcc-8004.2645.1 0.64 -2.2
2,542,510 + Xcc-8004.2645.1 0.65 +0.6
2,542,510 + Xcc-8004.2645.1 0.65 -2.0
2,542,604 - Xcc-8004.2645.1 0.73 +2.3
2,542,604 - Xcc-8004.2645.1 0.73 -1.0
2,542,604 - Xcc-8004.2645.1 0.73 -1.6
2,542,746 + Xcc-8004.2645.1 0.86 +0.1
2,542,746 + Xcc-8004.2645.1 0.86 -0.6
2,542,746 + Xcc-8004.2645.1 0.86 -0.6
2,542,746 + Xcc-8004.2645.1 0.86 -0.1
2,542,747 - Xcc-8004.2645.1 0.86 -0.8
2,542,747 - Xcc-8004.2645.1 0.86 -3.1
2,542,747 - Xcc-8004.2645.1 0.86 +0.7
2,542,747 - Xcc-8004.2645.1 0.86 +0.3
2,542,782 + Xcc-8004.2645.1 0.89 +0.3
2,542,783 - Xcc-8004.2645.1 0.90 -0.5

Or see this region's nucleotide sequence