Experiment: 1600 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.240.1 and Xcc-8004.241.1 are separated by 25 nucleotides Xcc-8004.241.1 and Xcc-8004.242.1 are separated by 95 nucleotides Xcc-8004.242.1 and Xcc-8004.244.1 are separated by 201 nucleotides Xcc-8004.244.1 and Xcc-8004.245.1 are separated by 90 nucleotides
Xcc-8004.240.1: Xcc-8004.240.1 - Phospholipid-binding protein, at 238,445 to 239,056
Xcc-8004.240.1
Xcc-8004.241.1: Xcc-8004.241.1 - hypothetical protein, at 239,082 to 239,279
Xcc-8004.241.1
Xcc-8004.242.1: Xcc-8004.242.1 - hypothetical protein, at 239,375 to 239,755
Xcc-8004.242.1
Xcc-8004.244.1: Xcc-8004.244.1 - FIG01209881: hypothetical protein, at 239,957 to 240,781
Xcc-8004.244.1
Xcc-8004.245.1: Xcc-8004.245.1 - Undecaprenyl-diphosphatase (EC 3.6.1.27), at 240,872 to 241,714
Xcc-8004.245.1
Position (kb) 239
240
241 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 238.977 kb on + strand, within Xcc-8004.240.1 at 238.977 kb on + strand, within Xcc-8004.240.1 at 238.977 kb on + strand, within Xcc-8004.240.1 at 238.977 kb on + strand, within Xcc-8004.240.1 at 238.977 kb on + strand, within Xcc-8004.240.1 at 238.977 kb on + strand, within Xcc-8004.240.1 at 238.978 kb on - strand, within Xcc-8004.240.1 at 239.002 kb on - strand at 239.002 kb on - strand at 239.002 kb on - strand at 239.002 kb on - strand at 239.002 kb on - strand at 239.002 kb on - strand at 239.002 kb on - strand at 239.002 kb on - strand at 239.002 kb on - strand at 239.030 kb on + strand at 239.030 kb on + strand at 239.030 kb on + strand at 239.030 kb on + strand at 239.030 kb on + strand at 239.030 kb on + strand at 239.030 kb on + strand at 239.030 kb on + strand at 239.030 kb on + strand at 239.031 kb on - strand at 239.031 kb on - strand at 239.031 kb on - strand at 239.031 kb on - strand at 239.031 kb on - strand at 239.031 kb on - strand at 239.031 kb on - strand at 239.031 kb on - strand at 239.031 kb on - strand at 239.031 kb on - strand at 239.054 kb on + strand at 239.170 kb on - strand, within Xcc-8004.241.1 at 239.170 kb on - strand, within Xcc-8004.241.1 at 239.170 kb on - strand, within Xcc-8004.241.1 at 239.170 kb on - strand, within Xcc-8004.241.1 at 239.174 kb on - strand, within Xcc-8004.241.1 at 239.174 kb on - strand, within Xcc-8004.241.1 at 239.174 kb on - strand, within Xcc-8004.241.1 at 239.174 kb on - strand, within Xcc-8004.241.1 at 239.174 kb on - strand, within Xcc-8004.241.1 at 239.174 kb on - strand, within Xcc-8004.241.1 at 239.174 kb on - strand, within Xcc-8004.241.1 at 239.174 kb on - strand, within Xcc-8004.241.1 at 239.174 kb on - strand, within Xcc-8004.241.1 at 239.303 kb on + strand at 239.303 kb on + strand at 239.303 kb on + strand at 239.304 kb on - strand at 239.304 kb on - strand at 239.304 kb on - strand at 239.304 kb on - strand at 239.304 kb on - strand at 239.333 kb on + strand at 239.333 kb on + strand at 239.333 kb on + strand at 239.333 kb on + strand at 239.333 kb on + strand at 239.333 kb on + strand at 239.333 kb on + strand at 239.334 kb on - strand at 239.334 kb on - strand at 239.334 kb on - strand at 239.334 kb on - strand at 239.334 kb on - strand at 239.334 kb on - strand at 239.334 kb on - strand at 239.334 kb on - strand at 239.443 kb on + strand, within Xcc-8004.242.1 at 239.443 kb on + strand, within Xcc-8004.242.1 at 239.444 kb on - strand, within Xcc-8004.242.1 at 239.444 kb on - strand, within Xcc-8004.242.1 at 239.531 kb on + strand, within Xcc-8004.242.1 at 239.531 kb on + strand, within Xcc-8004.242.1 at 239.532 kb on - strand, within Xcc-8004.242.1 at 239.614 kb on + strand, within Xcc-8004.242.1 at 239.614 kb on + strand, within Xcc-8004.242.1 at 239.614 kb on + strand, within Xcc-8004.242.1 at 239.614 kb on + strand, within Xcc-8004.242.1 at 239.614 kb on + strand, within Xcc-8004.242.1 at 239.614 kb on + strand, within Xcc-8004.242.1 at 239.614 kb on + strand, within Xcc-8004.242.1 at 239.614 kb on + strand, within Xcc-8004.242.1 at 239.614 kb on + strand, within Xcc-8004.242.1 at 239.614 kb on + strand, within Xcc-8004.242.1 at 239.614 kb on + strand, within Xcc-8004.242.1 at 239.614 kb on + strand, within Xcc-8004.242.1 at 239.614 kb on + strand, within Xcc-8004.242.1 at 239.615 kb on - strand, within Xcc-8004.242.1 at 239.615 kb on - strand, within Xcc-8004.242.1 at 239.615 kb on - strand, within Xcc-8004.242.1 at 239.615 kb on - strand, within Xcc-8004.242.1 at 239.615 kb on - strand, within Xcc-8004.242.1 at 239.626 kb on - strand, within Xcc-8004.242.1 at 239.753 kb on + strand at 239.753 kb on + strand at 239.754 kb on - strand at 239.783 kb on + strand at 239.783 kb on + strand at 239.783 kb on + strand at 239.783 kb on + strand at 239.784 kb on - strand at 239.784 kb on - strand at 239.784 kb on - strand at 239.784 kb on - strand at 239.784 kb on - strand at 239.850 kb on + strand at 239.850 kb on + strand at 239.850 kb on + strand at 239.851 kb on - strand at 239.851 kb on - strand at 239.895 kb on - strand at 239.938 kb on + strand at 239.938 kb on + strand at 239.938 kb on + strand at 239.938 kb on + strand at 239.938 kb on + strand at 239.938 kb on + strand at 239.939 kb on - strand at 239.939 kb on - strand at 239.939 kb on - strand at 239.939 kb on - strand at 239.939 kb on - strand at 239.946 kb on - strand at 239.946 kb on - strand at 239.946 kb on - strand at 239.991 kb on + strand at 239.991 kb on + strand at 239.991 kb on + strand at 239.991 kb on + strand at 239.991 kb on + strand at 239.992 kb on - strand at 239.992 kb on - strand at 239.992 kb on - strand at 239.992 kb on - strand at 239.992 kb on - strand at 239.992 kb on - strand at 240.210 kb on - strand, within Xcc-8004.244.1 at 240.466 kb on - strand, within Xcc-8004.244.1 at 240.466 kb on - strand, within Xcc-8004.244.1 at 240.543 kb on - strand, within Xcc-8004.244.1 at 240.617 kb on + strand, within Xcc-8004.244.1 at 240.618 kb on - strand, within Xcc-8004.244.1 at 240.764 kb on + strand at 240.765 kb on - strand at 241.699 kb on + strand at 241.699 kb on + strand at 241.700 kb on - strand at 241.744 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 1600 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together) remove 238,977 + Xcc-8004.240.1 0.87 -0.7 238,977 + Xcc-8004.240.1 0.87 +0.6 238,977 + Xcc-8004.240.1 0.87 -1.3 238,977 + Xcc-8004.240.1 0.87 -2.3 238,977 + Xcc-8004.240.1 0.87 +1.3 238,977 + Xcc-8004.240.1 0.87 -0.2 238,978 - Xcc-8004.240.1 0.87 +0.1 239,002 - -0.8 239,002 - +0.2 239,002 - -1.5 239,002 - +0.3 239,002 - +0.2 239,002 - -0.3 239,002 - +1.7 239,002 - +0.5 239,002 - +1.3 239,030 + +0.1 239,030 + -0.5 239,030 + -0.3 239,030 + +1.3 239,030 + -1.4 239,030 + +1.3 239,030 + +1.5 239,030 + -0.8 239,030 + +0.5 239,031 - -0.5 239,031 - +1.4 239,031 - -2.0 239,031 - -1.5 239,031 - +1.4 239,031 - +0.1 239,031 - -0.7 239,031 - -0.3 239,031 - -0.7 239,031 - +0.1 239,054 + +0.3 239,170 - Xcc-8004.241.1 0.44 +0.1 239,170 - Xcc-8004.241.1 0.44 -0.5 239,170 - Xcc-8004.241.1 0.44 +0.1 239,170 - Xcc-8004.241.1 0.44 -1.7 239,174 - Xcc-8004.241.1 0.46 +0.3 239,174 - Xcc-8004.241.1 0.46 +0.5 239,174 - Xcc-8004.241.1 0.46 -0.9 239,174 - Xcc-8004.241.1 0.46 -1.2 239,174 - Xcc-8004.241.1 0.46 +0.3 239,174 - Xcc-8004.241.1 0.46 -0.9 239,174 - Xcc-8004.241.1 0.46 -0.0 239,174 - Xcc-8004.241.1 0.46 +1.4 239,174 - Xcc-8004.241.1 0.46 -1.2 239,303 + -0.6 239,303 + -2.0 239,303 + +0.9 239,304 - -0.1 239,304 - -0.0 239,304 - -0.2 239,304 - -0.3 239,304 - +1.7 239,333 + -0.0 239,333 + +0.9 239,333 + +0.0 239,333 + -0.9 239,333 + -0.5 239,333 + +1.2 239,333 + -0.5 239,334 - -0.1 239,334 - -1.0 239,334 - -1.7 239,334 - +1.3 239,334 - -0.1 239,334 - +0.2 239,334 - -2.7 239,334 - +0.8 239,443 + Xcc-8004.242.1 0.18 +1.7 239,443 + Xcc-8004.242.1 0.18 -2.3 239,444 - Xcc-8004.242.1 0.18 -1.0 239,444 - Xcc-8004.242.1 0.18 -0.1 239,531 + Xcc-8004.242.1 0.41 +1.1 239,531 + Xcc-8004.242.1 0.41 +1.1 239,532 - Xcc-8004.242.1 0.41 -1.2 239,614 + Xcc-8004.242.1 0.63 +0.9 239,614 + Xcc-8004.242.1 0.63 -0.0 239,614 + Xcc-8004.242.1 0.63 -2.2 239,614 + Xcc-8004.242.1 0.63 -1.5 239,614 + Xcc-8004.242.1 0.63 -0.7 239,614 + Xcc-8004.242.1 0.63 -0.2 239,614 + Xcc-8004.242.1 0.63 -0.6 239,614 + Xcc-8004.242.1 0.63 +1.3 239,614 + Xcc-8004.242.1 0.63 -0.9 239,614 + Xcc-8004.242.1 0.63 +0.9 239,614 + Xcc-8004.242.1 0.63 -0.1 239,614 + Xcc-8004.242.1 0.63 -0.2 239,614 + Xcc-8004.242.1 0.63 -0.2 239,615 - Xcc-8004.242.1 0.63 -0.1 239,615 - Xcc-8004.242.1 0.63 +4.5 239,615 - Xcc-8004.242.1 0.63 +1.9 239,615 - Xcc-8004.242.1 0.63 +1.0 239,615 - Xcc-8004.242.1 0.63 +1.4 239,626 - Xcc-8004.242.1 0.66 +0.1 239,753 + -2.6 239,753 + +1.5 239,754 - -1.2 239,783 + +1.4 239,783 + -0.2 239,783 + +0.1 239,783 + +0.5 239,784 - +0.0 239,784 - -2.3 239,784 - -0.5 239,784 - +1.1 239,784 - -0.7 239,850 + -2.3 239,850 + +1.0 239,850 + -0.4 239,851 - -0.3 239,851 - -0.1 239,895 - +1.4 239,938 + +1.1 239,938 + -2.7 239,938 + -0.3 239,938 + +1.1 239,938 + +0.0 239,938 + -0.9 239,939 - +0.7 239,939 - +1.4 239,939 - +0.1 239,939 - +0.4 239,939 - +0.8 239,946 - -0.2 239,946 - -2.0 239,946 - +0.7 239,991 + -0.3 239,991 + +0.5 239,991 + -0.1 239,991 + +1.1 239,991 + +0.1 239,992 - +1.3 239,992 - -1.3 239,992 - +0.4 239,992 - -2.4 239,992 - -0.0 239,992 - -0.5 240,210 - Xcc-8004.244.1 0.31 +0.1 240,466 - Xcc-8004.244.1 0.62 -1.1 240,466 - Xcc-8004.244.1 0.62 +0.6 240,543 - Xcc-8004.244.1 0.71 -0.1 240,617 + Xcc-8004.244.1 0.80 +0.6 240,618 - Xcc-8004.244.1 0.80 +0.6 240,764 + +1.1 240,765 - +1.4 241,699 + +0.9 241,699 + -2.3 241,700 - +0.1 241,744 + +0.1
Or see this region's nucleotide sequence