Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1608.1

Experiment: 1600 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1607.1 and Xcc-8004.1608.1 are separated by 63 nucleotidesXcc-8004.1608.1 and Xcc-8004.1609.1 are separated by 189 nucleotides Xcc-8004.1607.1: Xcc-8004.1607.1 - Histidine kinase/response regulator hybrid protein, at 1,540,118 to 1,543,678 Xcc-8004.1607.1 Xcc-8004.1608.1: Xcc-8004.1608.1 - Histidine kinase/response regulator hybrid protein, at 1,543,742 to 1,547,302 Xcc-8004.1608.1 Xcc-8004.1609.1: Xcc-8004.1609.1 - Histidine kinase/response regulator hybrid protein, at 1,547,492 to 1,551,370 Xcc-8004.1609.1 Position (kb) 1543 1544 1545 1546 1547 1548Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1543.169 kb on - strand, within Xcc-8004.1607.1at 1543.702 kb on - strandat 1543.922 kb on + strandat 1543.923 kb on - strandat 1543.923 kb on - strandat 1543.923 kb on - strandat 1543.923 kb on - strandat 1543.923 kb on - strandat 1543.959 kb on - strandat 1544.160 kb on + strand, within Xcc-8004.1608.1at 1544.160 kb on + strand, within Xcc-8004.1608.1at 1544.160 kb on + strand, within Xcc-8004.1608.1at 1544.161 kb on - strand, within Xcc-8004.1608.1at 1544.161 kb on - strand, within Xcc-8004.1608.1at 1544.474 kb on + strand, within Xcc-8004.1608.1at 1544.745 kb on - strand, within Xcc-8004.1608.1at 1544.745 kb on - strand, within Xcc-8004.1608.1at 1544.813 kb on + strand, within Xcc-8004.1608.1at 1544.813 kb on + strand, within Xcc-8004.1608.1at 1544.813 kb on + strand, within Xcc-8004.1608.1at 1544.813 kb on + strand, within Xcc-8004.1608.1at 1544.814 kb on - strand, within Xcc-8004.1608.1at 1544.969 kb on - strand, within Xcc-8004.1608.1at 1545.005 kb on + strand, within Xcc-8004.1608.1at 1545.005 kb on + strand, within Xcc-8004.1608.1at 1545.005 kb on + strand, within Xcc-8004.1608.1at 1545.005 kb on + strand, within Xcc-8004.1608.1at 1545.005 kb on + strand, within Xcc-8004.1608.1at 1545.005 kb on + strand, within Xcc-8004.1608.1at 1545.006 kb on - strand, within Xcc-8004.1608.1at 1545.006 kb on - strand, within Xcc-8004.1608.1at 1545.006 kb on - strand, within Xcc-8004.1608.1at 1545.006 kb on - strand, within Xcc-8004.1608.1at 1545.006 kb on - strand, within Xcc-8004.1608.1at 1545.006 kb on - strand, within Xcc-8004.1608.1at 1545.006 kb on - strand, within Xcc-8004.1608.1at 1545.006 kb on - strand, within Xcc-8004.1608.1at 1545.326 kb on + strand, within Xcc-8004.1608.1at 1545.326 kb on + strand, within Xcc-8004.1608.1at 1545.326 kb on + strand, within Xcc-8004.1608.1at 1545.326 kb on + strand, within Xcc-8004.1608.1at 1545.326 kb on + strand, within Xcc-8004.1608.1at 1545.326 kb on + strand, within Xcc-8004.1608.1at 1545.326 kb on + strand, within Xcc-8004.1608.1at 1545.326 kb on + strand, within Xcc-8004.1608.1at 1545.326 kb on + strand, within Xcc-8004.1608.1at 1545.326 kb on + strand, within Xcc-8004.1608.1at 1545.326 kb on + strand, within Xcc-8004.1608.1at 1545.326 kb on + strand, within Xcc-8004.1608.1at 1545.326 kb on + strand, within Xcc-8004.1608.1at 1545.327 kb on - strand, within Xcc-8004.1608.1at 1545.327 kb on - strand, within Xcc-8004.1608.1at 1545.327 kb on - strand, within Xcc-8004.1608.1at 1545.327 kb on - strand, within Xcc-8004.1608.1at 1545.327 kb on - strand, within Xcc-8004.1608.1at 1545.327 kb on - strand, within Xcc-8004.1608.1at 1545.327 kb on - strand, within Xcc-8004.1608.1at 1545.327 kb on - strand, within Xcc-8004.1608.1at 1545.327 kb on - strand, within Xcc-8004.1608.1at 1545.390 kb on - strand, within Xcc-8004.1608.1at 1545.478 kb on - strand, within Xcc-8004.1608.1at 1545.720 kb on + strand, within Xcc-8004.1608.1at 1545.720 kb on + strand, within Xcc-8004.1608.1at 1545.726 kb on + strand, within Xcc-8004.1608.1at 1545.726 kb on + strand, within Xcc-8004.1608.1at 1545.944 kb on + strand, within Xcc-8004.1608.1at 1545.957 kb on + strand, within Xcc-8004.1608.1at 1545.958 kb on - strand, within Xcc-8004.1608.1at 1545.958 kb on - strand, within Xcc-8004.1608.1at 1545.958 kb on - strand, within Xcc-8004.1608.1at 1546.559 kb on - strand, within Xcc-8004.1608.1at 1546.559 kb on - strand, within Xcc-8004.1608.1at 1546.681 kb on - strand, within Xcc-8004.1608.1at 1546.891 kb on + strand, within Xcc-8004.1608.1at 1546.891 kb on + strand, within Xcc-8004.1608.1at 1546.891 kb on + strand, within Xcc-8004.1608.1at 1546.891 kb on + strand, within Xcc-8004.1608.1at 1546.891 kb on + strand, within Xcc-8004.1608.1at 1546.892 kb on - strand, within Xcc-8004.1608.1at 1546.892 kb on - strand, within Xcc-8004.1608.1at 1546.892 kb on - strand, within Xcc-8004.1608.1at 1546.892 kb on - strand, within Xcc-8004.1608.1at 1546.892 kb on - strand, within Xcc-8004.1608.1at 1546.893 kb on + strand, within Xcc-8004.1608.1at 1546.894 kb on - strand, within Xcc-8004.1608.1at 1547.442 kb on + strandat 1547.442 kb on + strandat 1547.443 kb on - strandat 1547.443 kb on - strandat 1547.456 kb on + strandat 1547.457 kb on - strandat 1547.462 kb on + strandat 1547.463 kb on - strandat 1547.512 kb on + strandat 1547.512 kb on + strandat 1547.512 kb on + strandat 1547.512 kb on + strandat 1547.512 kb on + strandat 1547.512 kb on + strandat 1547.512 kb on + strandat 1547.512 kb on + strandat 1547.513 kb on - strandat 1547.513 kb on - strandat 1547.513 kb on - strandat 1547.513 kb on - strandat 1547.513 kb on - strandat 1547.592 kb on - strandat 1547.592 kb on - strandat 1547.592 kb on - strandat 1547.605 kb on + strandat 1547.605 kb on + strandat 1547.605 kb on + strandat 1547.606 kb on - strandat 1547.606 kb on - strandat 1547.606 kb on - strandat 1547.606 kb on - strandat 1547.606 kb on - strandat 1547.606 kb on - strandat 1547.639 kb on + strandat 1547.639 kb on + strandat 1547.639 kb on + strandat 1547.640 kb on - strandat 1547.640 kb on - strandat 1547.640 kb on - strandat 1547.640 kb on - strandat 1547.640 kb on - strandat 1547.640 kb on - strandat 1547.757 kb on - strandat 1547.757 kb on - strandat 1547.757 kb on - strandat 1547.966 kb on + strand, within Xcc-8004.1609.1at 1547.966 kb on + strand, within Xcc-8004.1609.1at 1547.966 kb on + strand, within Xcc-8004.1609.1at 1547.967 kb on - strand, within Xcc-8004.1609.1at 1547.967 kb on - strand, within Xcc-8004.1609.1at 1547.970 kb on + strand, within Xcc-8004.1609.1at 1547.970 kb on + strand, within Xcc-8004.1609.1at 1547.970 kb on + strand, within Xcc-8004.1609.1at 1547.970 kb on + strand, within Xcc-8004.1609.1at 1547.970 kb on + strand, within Xcc-8004.1609.1at 1547.970 kb on + strand, within Xcc-8004.1609.1at 1547.970 kb on + strand, within Xcc-8004.1609.1at 1547.970 kb on + strand, within Xcc-8004.1609.1at 1547.970 kb on + strand, within Xcc-8004.1609.1at 1547.971 kb on - strand, within Xcc-8004.1609.1at 1547.971 kb on - strand, within Xcc-8004.1609.1at 1547.971 kb on - strand, within Xcc-8004.1609.1at 1547.971 kb on - strand, within Xcc-8004.1609.1at 1547.971 kb on - strand, within Xcc-8004.1609.1at 1547.971 kb on - strand, within Xcc-8004.1609.1at 1547.971 kb on - strand, within Xcc-8004.1609.1at 1547.971 kb on - strand, within Xcc-8004.1609.1at 1548.013 kb on + strand, within Xcc-8004.1609.1at 1548.013 kb on + strand, within Xcc-8004.1609.1at 1548.013 kb on + strand, within Xcc-8004.1609.1at 1548.013 kb on + strand, within Xcc-8004.1609.1at 1548.013 kb on + strand, within Xcc-8004.1609.1at 1548.014 kb on - strand, within Xcc-8004.1609.1at 1548.014 kb on - strand, within Xcc-8004.1609.1at 1548.014 kb on - strand, within Xcc-8004.1609.1at 1548.014 kb on - strand, within Xcc-8004.1609.1at 1548.018 kb on - strand, within Xcc-8004.1609.1at 1548.018 kb on - strand, within Xcc-8004.1609.1

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Per-strain Table

Position Strand Gene LocusTag Fraction 1600 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)
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1,543,169 - Xcc-8004.1607.1 0.86 -1.0
1,543,702 - +2.1
1,543,922 + -0.5
1,543,923 - -0.6
1,543,923 - +3.3
1,543,923 - +1.3
1,543,923 - +0.5
1,543,923 - -0.1
1,543,959 - -0.4
1,544,160 + Xcc-8004.1608.1 0.12 +0.9
1,544,160 + Xcc-8004.1608.1 0.12 -0.8
1,544,160 + Xcc-8004.1608.1 0.12 -2.4
1,544,161 - Xcc-8004.1608.1 0.12 -0.8
1,544,161 - Xcc-8004.1608.1 0.12 -0.0
1,544,474 + Xcc-8004.1608.1 0.21 -1.5
1,544,745 - Xcc-8004.1608.1 0.28 +0.1
1,544,745 - Xcc-8004.1608.1 0.28 +0.3
1,544,813 + Xcc-8004.1608.1 0.30 +0.3
1,544,813 + Xcc-8004.1608.1 0.30 -2.6
1,544,813 + Xcc-8004.1608.1 0.30 +1.5
1,544,813 + Xcc-8004.1608.1 0.30 +0.5
1,544,814 - Xcc-8004.1608.1 0.30 -1.1
1,544,969 - Xcc-8004.1608.1 0.34 -2.2
1,545,005 + Xcc-8004.1608.1 0.35 -2.0
1,545,005 + Xcc-8004.1608.1 0.35 -0.7
1,545,005 + Xcc-8004.1608.1 0.35 -0.4
1,545,005 + Xcc-8004.1608.1 0.35 +0.1
1,545,005 + Xcc-8004.1608.1 0.35 +0.3
1,545,005 + Xcc-8004.1608.1 0.35 -0.7
1,545,006 - Xcc-8004.1608.1 0.35 +1.0
1,545,006 - Xcc-8004.1608.1 0.35 -0.4
1,545,006 - Xcc-8004.1608.1 0.35 +1.2
1,545,006 - Xcc-8004.1608.1 0.35 +0.4
1,545,006 - Xcc-8004.1608.1 0.35 +1.5
1,545,006 - Xcc-8004.1608.1 0.35 -0.6
1,545,006 - Xcc-8004.1608.1 0.35 -0.8
1,545,006 - Xcc-8004.1608.1 0.35 +0.7
1,545,326 + Xcc-8004.1608.1 0.44 +0.2
1,545,326 + Xcc-8004.1608.1 0.44 +0.5
1,545,326 + Xcc-8004.1608.1 0.44 +0.7
1,545,326 + Xcc-8004.1608.1 0.44 -0.5
1,545,326 + Xcc-8004.1608.1 0.44 +0.8
1,545,326 + Xcc-8004.1608.1 0.44 -0.3
1,545,326 + Xcc-8004.1608.1 0.44 +2.0
1,545,326 + Xcc-8004.1608.1 0.44 -1.8
1,545,326 + Xcc-8004.1608.1 0.44 +0.4
1,545,326 + Xcc-8004.1608.1 0.44 -1.2
1,545,326 + Xcc-8004.1608.1 0.44 +1.3
1,545,326 + Xcc-8004.1608.1 0.44 -0.7
1,545,326 + Xcc-8004.1608.1 0.44 -0.8
1,545,327 - Xcc-8004.1608.1 0.45 -0.2
1,545,327 - Xcc-8004.1608.1 0.45 -0.6
1,545,327 - Xcc-8004.1608.1 0.45 +0.9
1,545,327 - Xcc-8004.1608.1 0.45 -1.8
1,545,327 - Xcc-8004.1608.1 0.45 -2.4
1,545,327 - Xcc-8004.1608.1 0.45 -0.2
1,545,327 - Xcc-8004.1608.1 0.45 -0.8
1,545,327 - Xcc-8004.1608.1 0.45 -0.6
1,545,327 - Xcc-8004.1608.1 0.45 +1.0
1,545,390 - Xcc-8004.1608.1 0.46 -0.4
1,545,478 - Xcc-8004.1608.1 0.49 +1.2
1,545,720 + Xcc-8004.1608.1 0.56 +2.2
1,545,720 + Xcc-8004.1608.1 0.56 -0.2
1,545,726 + Xcc-8004.1608.1 0.56 -0.3
1,545,726 + Xcc-8004.1608.1 0.56 +0.4
1,545,944 + Xcc-8004.1608.1 0.62 -1.1
1,545,957 + Xcc-8004.1608.1 0.62 -1.8
1,545,958 - Xcc-8004.1608.1 0.62 -1.1
1,545,958 - Xcc-8004.1608.1 0.62 +0.5
1,545,958 - Xcc-8004.1608.1 0.62 -1.5
1,546,559 - Xcc-8004.1608.1 0.79 +0.2
1,546,559 - Xcc-8004.1608.1 0.79 -0.0
1,546,681 - Xcc-8004.1608.1 0.83 -1.2
1,546,891 + Xcc-8004.1608.1 0.88 +1.2
1,546,891 + Xcc-8004.1608.1 0.88 -0.8
1,546,891 + Xcc-8004.1608.1 0.88 -1.7
1,546,891 + Xcc-8004.1608.1 0.88 -0.5
1,546,891 + Xcc-8004.1608.1 0.88 -0.1
1,546,892 - Xcc-8004.1608.1 0.88 -2.2
1,546,892 - Xcc-8004.1608.1 0.88 +0.2
1,546,892 - Xcc-8004.1608.1 0.88 +1.1
1,546,892 - Xcc-8004.1608.1 0.88 -0.2
1,546,892 - Xcc-8004.1608.1 0.88 -1.7
1,546,893 + Xcc-8004.1608.1 0.88 +1.2
1,546,894 - Xcc-8004.1608.1 0.89 +0.4
1,547,442 + +0.2
1,547,442 + -0.4
1,547,443 - -1.2
1,547,443 - -1.7
1,547,456 + +2.5
1,547,457 - -0.5
1,547,462 + -3.4
1,547,463 - +0.2
1,547,512 + +1.7
1,547,512 + +0.2
1,547,512 + +0.2
1,547,512 + -1.2
1,547,512 + +1.6
1,547,512 + +0.2
1,547,512 + -0.1
1,547,512 + -1.4
1,547,513 - -0.8
1,547,513 - +0.5
1,547,513 - -0.4
1,547,513 - +0.2
1,547,513 - -0.8
1,547,592 - +0.2
1,547,592 - +1.1
1,547,592 - -0.3
1,547,605 + -0.2
1,547,605 + -1.3
1,547,605 + +0.0
1,547,606 - +0.7
1,547,606 - -1.8
1,547,606 - -0.5
1,547,606 - +2.7
1,547,606 - -0.4
1,547,606 - -1.6
1,547,639 + -0.2
1,547,639 + -0.0
1,547,639 + -0.3
1,547,640 - -0.8
1,547,640 - -1.4
1,547,640 - +1.2
1,547,640 - +0.7
1,547,640 - -0.2
1,547,640 - +0.0
1,547,757 - +2.5
1,547,757 - +0.2
1,547,757 - -0.7
1,547,966 + Xcc-8004.1609.1 0.12 +0.8
1,547,966 + Xcc-8004.1609.1 0.12 -0.3
1,547,966 + Xcc-8004.1609.1 0.12 +0.7
1,547,967 - Xcc-8004.1609.1 0.12 -1.2
1,547,967 - Xcc-8004.1609.1 0.12 -0.3
1,547,970 + Xcc-8004.1609.1 0.12 +1.2
1,547,970 + Xcc-8004.1609.1 0.12 +2.0
1,547,970 + Xcc-8004.1609.1 0.12 -0.9
1,547,970 + Xcc-8004.1609.1 0.12 -1.8
1,547,970 + Xcc-8004.1609.1 0.12 -2.4
1,547,970 + Xcc-8004.1609.1 0.12 -0.6
1,547,970 + Xcc-8004.1609.1 0.12 +1.0
1,547,970 + Xcc-8004.1609.1 0.12 +1.7
1,547,970 + Xcc-8004.1609.1 0.12 -1.2
1,547,971 - Xcc-8004.1609.1 0.12 -0.9
1,547,971 - Xcc-8004.1609.1 0.12 -1.4
1,547,971 - Xcc-8004.1609.1 0.12 -0.4
1,547,971 - Xcc-8004.1609.1 0.12 -1.3
1,547,971 - Xcc-8004.1609.1 0.12 +0.3
1,547,971 - Xcc-8004.1609.1 0.12 -1.1
1,547,971 - Xcc-8004.1609.1 0.12 -1.1
1,547,971 - Xcc-8004.1609.1 0.12 +0.5
1,548,013 + Xcc-8004.1609.1 0.13 +3.2
1,548,013 + Xcc-8004.1609.1 0.13 -0.7
1,548,013 + Xcc-8004.1609.1 0.13 -0.3
1,548,013 + Xcc-8004.1609.1 0.13 -1.5
1,548,013 + Xcc-8004.1609.1 0.13 -0.7
1,548,014 - Xcc-8004.1609.1 0.13 -0.9
1,548,014 - Xcc-8004.1609.1 0.13 +0.0
1,548,014 - Xcc-8004.1609.1 0.13 -1.1
1,548,014 - Xcc-8004.1609.1 0.13 +0.2
1,548,018 - Xcc-8004.1609.1 0.14 +1.2
1,548,018 - Xcc-8004.1609.1 0.14 +0.5

Or see this region's nucleotide sequence