Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1425.1

Experiment: 1600 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntXcc-8004.1424.1 and Xcc-8004.1425.1 are separated by 170 nucleotidesXcc-8004.1425.1 and Xcc-8004.1426.1 overlap by 4 nucleotides Xcc-8004.1424.1: Xcc-8004.1424.1 - Ferrichrome-iron receptor, at 1,361,028 to 1,363,436 Xcc-8004.1424.1 Xcc-8004.1425.1: Xcc-8004.1425.1 - Alpha,alpha-trehalose-phosphate synthase [UDP-forming] (EC 2.4.1.15), at 1,363,607 to 1,365,964 Xcc-8004.1425.1 Xcc-8004.1426.1: Xcc-8004.1426.1 - Transmembrane transport protein, at 1,365,961 to 1,367,202 Xcc-8004.1426.1 Position (kb) 1363 1364 1365 1366Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1362.626 kb on - strand, within Xcc-8004.1424.1at 1362.658 kb on + strand, within Xcc-8004.1424.1at 1362.811 kb on + strand, within Xcc-8004.1424.1at 1362.820 kb on + strand, within Xcc-8004.1424.1at 1362.823 kb on + strand, within Xcc-8004.1424.1at 1362.823 kb on + strand, within Xcc-8004.1424.1at 1362.823 kb on + strand, within Xcc-8004.1424.1at 1362.823 kb on + strand, within Xcc-8004.1424.1at 1362.823 kb on + strand, within Xcc-8004.1424.1at 1362.824 kb on - strand, within Xcc-8004.1424.1at 1362.824 kb on - strand, within Xcc-8004.1424.1at 1362.824 kb on - strand, within Xcc-8004.1424.1at 1362.824 kb on - strand, within Xcc-8004.1424.1at 1362.899 kb on - strand, within Xcc-8004.1424.1at 1363.243 kb on + strandat 1363.243 kb on + strandat 1363.244 kb on - strandat 1363.608 kb on + strandat 1363.672 kb on + strandat 1363.673 kb on - strandat 1363.673 kb on - strandat 1363.719 kb on + strandat 1363.719 kb on + strandat 1363.719 kb on + strandat 1363.720 kb on - strandat 1363.720 kb on - strandat 1363.722 kb on + strandat 1363.723 kb on - strandat 1363.989 kb on + strand, within Xcc-8004.1425.1at 1363.989 kb on + strand, within Xcc-8004.1425.1at 1364.115 kb on + strand, within Xcc-8004.1425.1at 1364.115 kb on + strand, within Xcc-8004.1425.1at 1364.115 kb on + strand, within Xcc-8004.1425.1at 1364.115 kb on + strand, within Xcc-8004.1425.1at 1364.238 kb on + strand, within Xcc-8004.1425.1at 1364.238 kb on + strand, within Xcc-8004.1425.1at 1364.239 kb on - strand, within Xcc-8004.1425.1at 1364.239 kb on - strand, within Xcc-8004.1425.1at 1364.442 kb on + strand, within Xcc-8004.1425.1at 1364.442 kb on + strand, within Xcc-8004.1425.1at 1364.442 kb on + strand, within Xcc-8004.1425.1at 1364.443 kb on - strand, within Xcc-8004.1425.1at 1364.540 kb on - strand, within Xcc-8004.1425.1at 1364.554 kb on - strand, within Xcc-8004.1425.1at 1364.628 kb on + strand, within Xcc-8004.1425.1at 1364.629 kb on - strand, within Xcc-8004.1425.1at 1364.629 kb on - strand, within Xcc-8004.1425.1at 1364.703 kb on + strand, within Xcc-8004.1425.1at 1364.703 kb on + strand, within Xcc-8004.1425.1at 1364.703 kb on + strand, within Xcc-8004.1425.1at 1364.703 kb on + strand, within Xcc-8004.1425.1at 1364.703 kb on + strand, within Xcc-8004.1425.1at 1364.703 kb on + strand, within Xcc-8004.1425.1at 1364.704 kb on - strand, within Xcc-8004.1425.1at 1364.704 kb on - strand, within Xcc-8004.1425.1at 1364.704 kb on - strand, within Xcc-8004.1425.1at 1364.704 kb on - strand, within Xcc-8004.1425.1at 1364.704 kb on - strand, within Xcc-8004.1425.1at 1364.704 kb on - strand, within Xcc-8004.1425.1at 1364.704 kb on - strand, within Xcc-8004.1425.1at 1364.869 kb on - strand, within Xcc-8004.1425.1at 1365.120 kb on + strand, within Xcc-8004.1425.1at 1365.120 kb on + strand, within Xcc-8004.1425.1at 1365.120 kb on + strand, within Xcc-8004.1425.1at 1365.121 kb on - strand, within Xcc-8004.1425.1at 1365.252 kb on + strand, within Xcc-8004.1425.1at 1365.252 kb on + strand, within Xcc-8004.1425.1at 1365.252 kb on + strand, within Xcc-8004.1425.1at 1365.253 kb on - strand, within Xcc-8004.1425.1at 1365.253 kb on - strand, within Xcc-8004.1425.1at 1365.253 kb on - strand, within Xcc-8004.1425.1at 1365.253 kb on - strand, within Xcc-8004.1425.1at 1365.333 kb on + strand, within Xcc-8004.1425.1at 1365.333 kb on + strand, within Xcc-8004.1425.1at 1365.333 kb on + strand, within Xcc-8004.1425.1at 1365.333 kb on + strand, within Xcc-8004.1425.1at 1365.333 kb on + strand, within Xcc-8004.1425.1at 1365.334 kb on - strand, within Xcc-8004.1425.1at 1365.334 kb on - strand, within Xcc-8004.1425.1at 1365.334 kb on - strand, within Xcc-8004.1425.1at 1365.334 kb on - strand, within Xcc-8004.1425.1at 1365.334 kb on - strand, within Xcc-8004.1425.1at 1365.456 kb on + strand, within Xcc-8004.1425.1at 1365.471 kb on + strand, within Xcc-8004.1425.1at 1365.471 kb on + strand, within Xcc-8004.1425.1at 1365.471 kb on + strand, within Xcc-8004.1425.1at 1365.471 kb on + strand, within Xcc-8004.1425.1at 1365.471 kb on + strand, within Xcc-8004.1425.1at 1365.472 kb on - strand, within Xcc-8004.1425.1at 1365.472 kb on - strand, within Xcc-8004.1425.1at 1365.726 kb on + strand, within Xcc-8004.1425.1at 1365.726 kb on + strand, within Xcc-8004.1425.1at 1365.726 kb on + strand, within Xcc-8004.1425.1at 1365.726 kb on + strand, within Xcc-8004.1425.1at 1365.726 kb on + strand, within Xcc-8004.1425.1at 1365.726 kb on + strand, within Xcc-8004.1425.1at 1365.727 kb on - strand, within Xcc-8004.1425.1at 1365.727 kb on - strand, within Xcc-8004.1425.1at 1365.727 kb on - strand, within Xcc-8004.1425.1at 1365.835 kb on - strandat 1365.835 kb on - strandat 1366.136 kb on + strand, within Xcc-8004.1426.1at 1366.137 kb on - strand, within Xcc-8004.1426.1at 1366.137 kb on - strand, within Xcc-8004.1426.1at 1366.137 kb on - strand, within Xcc-8004.1426.1at 1366.137 kb on - strand, within Xcc-8004.1426.1at 1366.265 kb on + strand, within Xcc-8004.1426.1at 1366.266 kb on - strand, within Xcc-8004.1426.1at 1366.319 kb on + strand, within Xcc-8004.1426.1at 1366.320 kb on - strand, within Xcc-8004.1426.1at 1366.544 kb on + strand, within Xcc-8004.1426.1at 1366.545 kb on - strand, within Xcc-8004.1426.1at 1366.545 kb on - strand, within Xcc-8004.1426.1at 1366.545 kb on - strand, within Xcc-8004.1426.1at 1366.545 kb on - strand, within Xcc-8004.1426.1at 1366.625 kb on + strand, within Xcc-8004.1426.1at 1366.626 kb on - strand, within Xcc-8004.1426.1at 1366.626 kb on - strand, within Xcc-8004.1426.1at 1366.731 kb on + strand, within Xcc-8004.1426.1at 1366.731 kb on + strand, within Xcc-8004.1426.1at 1366.732 kb on - strand, within Xcc-8004.1426.1at 1366.771 kb on + strand, within Xcc-8004.1426.1at 1366.771 kb on + strand, within Xcc-8004.1426.1at 1366.809 kb on + strand, within Xcc-8004.1426.1at 1366.809 kb on + strand, within Xcc-8004.1426.1at 1366.810 kb on - strand, within Xcc-8004.1426.1at 1366.810 kb on - strand, within Xcc-8004.1426.1at 1366.811 kb on + strand, within Xcc-8004.1426.1at 1366.811 kb on + strand, within Xcc-8004.1426.1at 1366.811 kb on + strand, within Xcc-8004.1426.1at 1366.811 kb on + strand, within Xcc-8004.1426.1at 1366.811 kb on + strand, within Xcc-8004.1426.1at 1366.811 kb on + strand, within Xcc-8004.1426.1at 1366.812 kb on - strand, within Xcc-8004.1426.1at 1366.812 kb on - strand, within Xcc-8004.1426.1at 1366.812 kb on - strand, within Xcc-8004.1426.1at 1366.812 kb on - strand, within Xcc-8004.1426.1at 1366.812 kb on - strand, within Xcc-8004.1426.1at 1366.812 kb on - strand, within Xcc-8004.1426.1at 1366.880 kb on + strand, within Xcc-8004.1426.1at 1366.880 kb on + strand, within Xcc-8004.1426.1at 1366.881 kb on - strand, within Xcc-8004.1426.1at 1366.881 kb on - strand, within Xcc-8004.1426.1

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 1600 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)
remove
1,362,626 - Xcc-8004.1424.1 0.66 -0.8
1,362,658 + Xcc-8004.1424.1 0.68 -0.3
1,362,811 + Xcc-8004.1424.1 0.74 -1.0
1,362,820 + Xcc-8004.1424.1 0.74 -0.4
1,362,823 + Xcc-8004.1424.1 0.75 +0.5
1,362,823 + Xcc-8004.1424.1 0.75 +0.4
1,362,823 + Xcc-8004.1424.1 0.75 +0.9
1,362,823 + Xcc-8004.1424.1 0.75 +0.0
1,362,823 + Xcc-8004.1424.1 0.75 -0.4
1,362,824 - Xcc-8004.1424.1 0.75 -0.3
1,362,824 - Xcc-8004.1424.1 0.75 -1.5
1,362,824 - Xcc-8004.1424.1 0.75 +0.4
1,362,824 - Xcc-8004.1424.1 0.75 -0.0
1,362,899 - Xcc-8004.1424.1 0.78 +0.3
1,363,243 + +0.3
1,363,243 + -1.0
1,363,244 - +0.7
1,363,608 + -1.3
1,363,672 + +2.6
1,363,673 - -1.0
1,363,673 - +0.2
1,363,719 + +0.2
1,363,719 + -0.8
1,363,719 + -1.1
1,363,720 - +0.2
1,363,720 - -0.1
1,363,722 + +0.2
1,363,723 - -1.4
1,363,989 + Xcc-8004.1425.1 0.16 -1.2
1,363,989 + Xcc-8004.1425.1 0.16 +1.7
1,364,115 + Xcc-8004.1425.1 0.22 -2.5
1,364,115 + Xcc-8004.1425.1 0.22 -0.8
1,364,115 + Xcc-8004.1425.1 0.22 +0.8
1,364,115 + Xcc-8004.1425.1 0.22 -0.7
1,364,238 + Xcc-8004.1425.1 0.27 -0.4
1,364,238 + Xcc-8004.1425.1 0.27 -3.0
1,364,239 - Xcc-8004.1425.1 0.27 -0.5
1,364,239 - Xcc-8004.1425.1 0.27 -1.4
1,364,442 + Xcc-8004.1425.1 0.35 -0.6
1,364,442 + Xcc-8004.1425.1 0.35 +0.1
1,364,442 + Xcc-8004.1425.1 0.35 -0.1
1,364,443 - Xcc-8004.1425.1 0.35 -1.3
1,364,540 - Xcc-8004.1425.1 0.40 +0.6
1,364,554 - Xcc-8004.1425.1 0.40 +1.3
1,364,628 + Xcc-8004.1425.1 0.43 +0.3
1,364,629 - Xcc-8004.1425.1 0.43 -0.3
1,364,629 - Xcc-8004.1425.1 0.43 -1.3
1,364,703 + Xcc-8004.1425.1 0.46 +0.3
1,364,703 + Xcc-8004.1425.1 0.46 -0.8
1,364,703 + Xcc-8004.1425.1 0.46 +0.4
1,364,703 + Xcc-8004.1425.1 0.46 -2.9
1,364,703 + Xcc-8004.1425.1 0.46 -1.3
1,364,703 + Xcc-8004.1425.1 0.46 +1.2
1,364,704 - Xcc-8004.1425.1 0.47 +1.6
1,364,704 - Xcc-8004.1425.1 0.47 -0.1
1,364,704 - Xcc-8004.1425.1 0.47 -0.1
1,364,704 - Xcc-8004.1425.1 0.47 -0.3
1,364,704 - Xcc-8004.1425.1 0.47 +0.2
1,364,704 - Xcc-8004.1425.1 0.47 +0.1
1,364,704 - Xcc-8004.1425.1 0.47 +1.6
1,364,869 - Xcc-8004.1425.1 0.54 -0.8
1,365,120 + Xcc-8004.1425.1 0.64 -0.3
1,365,120 + Xcc-8004.1425.1 0.64 +0.7
1,365,120 + Xcc-8004.1425.1 0.64 -0.2
1,365,121 - Xcc-8004.1425.1 0.64 +1.6
1,365,252 + Xcc-8004.1425.1 0.70 +0.7
1,365,252 + Xcc-8004.1425.1 0.70 +1.3
1,365,252 + Xcc-8004.1425.1 0.70 -1.2
1,365,253 - Xcc-8004.1425.1 0.70 +1.0
1,365,253 - Xcc-8004.1425.1 0.70 +0.8
1,365,253 - Xcc-8004.1425.1 0.70 +1.6
1,365,253 - Xcc-8004.1425.1 0.70 +4.3
1,365,333 + Xcc-8004.1425.1 0.73 +0.3
1,365,333 + Xcc-8004.1425.1 0.73 -0.1
1,365,333 + Xcc-8004.1425.1 0.73 -0.2
1,365,333 + Xcc-8004.1425.1 0.73 -0.4
1,365,333 + Xcc-8004.1425.1 0.73 +0.7
1,365,334 - Xcc-8004.1425.1 0.73 +0.5
1,365,334 - Xcc-8004.1425.1 0.73 -0.4
1,365,334 - Xcc-8004.1425.1 0.73 +0.7
1,365,334 - Xcc-8004.1425.1 0.73 +0.2
1,365,334 - Xcc-8004.1425.1 0.73 +0.6
1,365,456 + Xcc-8004.1425.1 0.78 +0.2
1,365,471 + Xcc-8004.1425.1 0.79 +0.3
1,365,471 + Xcc-8004.1425.1 0.79 +0.8
1,365,471 + Xcc-8004.1425.1 0.79 -0.8
1,365,471 + Xcc-8004.1425.1 0.79 -1.5
1,365,471 + Xcc-8004.1425.1 0.79 -0.6
1,365,472 - Xcc-8004.1425.1 0.79 -0.2
1,365,472 - Xcc-8004.1425.1 0.79 -0.8
1,365,726 + Xcc-8004.1425.1 0.90 -3.3
1,365,726 + Xcc-8004.1425.1 0.90 +1.2
1,365,726 + Xcc-8004.1425.1 0.90 +0.6
1,365,726 + Xcc-8004.1425.1 0.90 +0.5
1,365,726 + Xcc-8004.1425.1 0.90 +0.0
1,365,726 + Xcc-8004.1425.1 0.90 +0.3
1,365,727 - Xcc-8004.1425.1 0.90 +0.4
1,365,727 - Xcc-8004.1425.1 0.90 +0.2
1,365,727 - Xcc-8004.1425.1 0.90 +0.3
1,365,835 - -2.0
1,365,835 - +1.2
1,366,136 + Xcc-8004.1426.1 0.14 -1.6
1,366,137 - Xcc-8004.1426.1 0.14 -0.6
1,366,137 - Xcc-8004.1426.1 0.14 -0.1
1,366,137 - Xcc-8004.1426.1 0.14 -1.7
1,366,137 - Xcc-8004.1426.1 0.14 +0.5
1,366,265 + Xcc-8004.1426.1 0.24 -1.3
1,366,266 - Xcc-8004.1426.1 0.25 -2.7
1,366,319 + Xcc-8004.1426.1 0.29 +1.6
1,366,320 - Xcc-8004.1426.1 0.29 +3.0
1,366,544 + Xcc-8004.1426.1 0.47 +1.2
1,366,545 - Xcc-8004.1426.1 0.47 +0.0
1,366,545 - Xcc-8004.1426.1 0.47 -1.2
1,366,545 - Xcc-8004.1426.1 0.47 -0.1
1,366,545 - Xcc-8004.1426.1 0.47 +0.2
1,366,625 + Xcc-8004.1426.1 0.53 -0.3
1,366,626 - Xcc-8004.1426.1 0.54 -1.2
1,366,626 - Xcc-8004.1426.1 0.54 +0.1
1,366,731 + Xcc-8004.1426.1 0.62 -0.2
1,366,731 + Xcc-8004.1426.1 0.62 -0.6
1,366,732 - Xcc-8004.1426.1 0.62 -1.0
1,366,771 + Xcc-8004.1426.1 0.65 -0.4
1,366,771 + Xcc-8004.1426.1 0.65 -0.5
1,366,809 + Xcc-8004.1426.1 0.68 -0.2
1,366,809 + Xcc-8004.1426.1 0.68 -1.3
1,366,810 - Xcc-8004.1426.1 0.68 -0.2
1,366,810 - Xcc-8004.1426.1 0.68 -2.3
1,366,811 + Xcc-8004.1426.1 0.68 +0.6
1,366,811 + Xcc-8004.1426.1 0.68 +1.5
1,366,811 + Xcc-8004.1426.1 0.68 -0.7
1,366,811 + Xcc-8004.1426.1 0.68 +1.5
1,366,811 + Xcc-8004.1426.1 0.68 +1.2
1,366,811 + Xcc-8004.1426.1 0.68 -0.8
1,366,812 - Xcc-8004.1426.1 0.69 +0.5
1,366,812 - Xcc-8004.1426.1 0.69 +1.5
1,366,812 - Xcc-8004.1426.1 0.69 -0.3
1,366,812 - Xcc-8004.1426.1 0.69 -1.7
1,366,812 - Xcc-8004.1426.1 0.69 +0.2
1,366,812 - Xcc-8004.1426.1 0.69 -0.9
1,366,880 + Xcc-8004.1426.1 0.74 +0.3
1,366,880 + Xcc-8004.1426.1 0.74 -1.3
1,366,881 - Xcc-8004.1426.1 0.74 -0.1
1,366,881 - Xcc-8004.1426.1 0.74 -0.3

Or see this region's nucleotide sequence