Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1179.1

Experiment: 1600 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1177.1 and Xcc-8004.1178.1 overlap by 7 nucleotidesXcc-8004.1178.1 and Xcc-8004.1179.1 are separated by 147 nucleotidesXcc-8004.1179.1 and Xcc-8004.1180.1 are separated by 309 nucleotides Xcc-8004.1177.1: Xcc-8004.1177.1 - Mobile element protein, at 1,110,524 to 1,110,787 Xcc-8004.1177.1 Xcc-8004.1178.1: Xcc-8004.1178.1 - Mobile element protein, at 1,110,781 to 1,111,626 Xcc-8004.1178.1 Xcc-8004.1179.1: Xcc-8004.1179.1 - Proline imino-peptidase, at 1,111,774 to 1,113,102 Xcc-8004.1179.1 Xcc-8004.1180.1: Xcc-8004.1180.1 - Transketolase (EC 2.2.1.1), at 1,113,412 to 1,115,412 Xcc-8004.1180.1 Position (kb) 1111 1112 1113 1114Strain fitness (log2 ratio) -2 -1 0 1 2at 1111.624 kb on + strandat 1111.683 kb on - strandat 1111.699 kb on + strandat 1111.712 kb on + strandat 1111.712 kb on + strandat 1111.712 kb on + strandat 1111.712 kb on + strandat 1111.713 kb on - strandat 1111.824 kb on - strandat 1111.824 kb on - strandat 1111.824 kb on - strandat 1111.827 kb on + strandat 1111.827 kb on + strandat 1111.828 kb on - strandat 1111.828 kb on - strandat 1111.828 kb on - strandat 1111.876 kb on + strandat 1111.876 kb on + strandat 1111.876 kb on + strandat 1111.876 kb on + strandat 1111.877 kb on - strandat 1111.877 kb on - strandat 1111.877 kb on - strandat 1111.907 kb on + strand, within Xcc-8004.1179.1at 1111.908 kb on - strand, within Xcc-8004.1179.1at 1111.908 kb on - strand, within Xcc-8004.1179.1at 1112.025 kb on + strand, within Xcc-8004.1179.1at 1112.025 kb on + strand, within Xcc-8004.1179.1at 1112.025 kb on + strand, within Xcc-8004.1179.1at 1112.025 kb on + strand, within Xcc-8004.1179.1at 1112.026 kb on - strand, within Xcc-8004.1179.1at 1112.026 kb on - strand, within Xcc-8004.1179.1at 1112.026 kb on - strand, within Xcc-8004.1179.1at 1112.026 kb on - strand, within Xcc-8004.1179.1at 1112.079 kb on - strand, within Xcc-8004.1179.1at 1112.079 kb on - strand, within Xcc-8004.1179.1at 1112.079 kb on - strand, within Xcc-8004.1179.1at 1112.159 kb on + strand, within Xcc-8004.1179.1at 1112.160 kb on - strand, within Xcc-8004.1179.1at 1112.256 kb on + strand, within Xcc-8004.1179.1at 1112.341 kb on + strand, within Xcc-8004.1179.1at 1112.342 kb on - strand, within Xcc-8004.1179.1at 1112.342 kb on - strand, within Xcc-8004.1179.1at 1112.516 kb on + strand, within Xcc-8004.1179.1at 1112.516 kb on + strand, within Xcc-8004.1179.1at 1112.516 kb on + strand, within Xcc-8004.1179.1at 1112.517 kb on - strand, within Xcc-8004.1179.1at 1112.517 kb on - strand, within Xcc-8004.1179.1at 1112.517 kb on - strand, within Xcc-8004.1179.1at 1112.517 kb on - strand, within Xcc-8004.1179.1at 1112.517 kb on - strand, within Xcc-8004.1179.1at 1112.527 kb on + strand, within Xcc-8004.1179.1at 1112.527 kb on + strand, within Xcc-8004.1179.1at 1112.527 kb on + strand, within Xcc-8004.1179.1at 1112.527 kb on + strand, within Xcc-8004.1179.1at 1112.528 kb on - strand, within Xcc-8004.1179.1at 1112.528 kb on - strand, within Xcc-8004.1179.1at 1112.528 kb on - strand, within Xcc-8004.1179.1at 1112.554 kb on + strand, within Xcc-8004.1179.1at 1112.555 kb on - strand, within Xcc-8004.1179.1at 1112.555 kb on - strand, within Xcc-8004.1179.1at 1112.707 kb on + strand, within Xcc-8004.1179.1at 1112.707 kb on + strand, within Xcc-8004.1179.1at 1112.707 kb on + strand, within Xcc-8004.1179.1at 1112.708 kb on - strand, within Xcc-8004.1179.1at 1112.809 kb on + strand, within Xcc-8004.1179.1at 1112.810 kb on - strand, within Xcc-8004.1179.1at 1112.810 kb on - strand, within Xcc-8004.1179.1at 1112.902 kb on + strand, within Xcc-8004.1179.1at 1112.902 kb on + strand, within Xcc-8004.1179.1at 1112.903 kb on - strand, within Xcc-8004.1179.1at 1112.903 kb on - strand, within Xcc-8004.1179.1at 1112.956 kb on + strand, within Xcc-8004.1179.1at 1112.956 kb on + strand, within Xcc-8004.1179.1at 1112.956 kb on + strand, within Xcc-8004.1179.1at 1112.957 kb on - strand, within Xcc-8004.1179.1at 1113.413 kb on + strandat 1113.413 kb on + strandat 1113.414 kb on - strandat 1113.414 kb on - strandat 1113.414 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 1600 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)
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1,111,624 + -1.2
1,111,683 - -0.1
1,111,699 + +0.3
1,111,712 + +0.2
1,111,712 + -2.6
1,111,712 + +1.0
1,111,712 + -0.5
1,111,713 - +1.9
1,111,824 - +1.2
1,111,824 - -0.1
1,111,824 - -0.1
1,111,827 + -1.4
1,111,827 + +0.8
1,111,828 - +0.0
1,111,828 - -1.1
1,111,828 - +1.8
1,111,876 + +0.8
1,111,876 + -0.8
1,111,876 + +0.8
1,111,876 + -0.4
1,111,877 - +0.4
1,111,877 - -1.2
1,111,877 - +0.8
1,111,907 + Xcc-8004.1179.1 0.10 -2.7
1,111,908 - Xcc-8004.1179.1 0.10 +1.4
1,111,908 - Xcc-8004.1179.1 0.10 -1.4
1,112,025 + Xcc-8004.1179.1 0.19 -0.8
1,112,025 + Xcc-8004.1179.1 0.19 -0.8
1,112,025 + Xcc-8004.1179.1 0.19 -0.2
1,112,025 + Xcc-8004.1179.1 0.19 -1.8
1,112,026 - Xcc-8004.1179.1 0.19 -1.3
1,112,026 - Xcc-8004.1179.1 0.19 +0.2
1,112,026 - Xcc-8004.1179.1 0.19 -1.8
1,112,026 - Xcc-8004.1179.1 0.19 -0.8
1,112,079 - Xcc-8004.1179.1 0.23 +0.8
1,112,079 - Xcc-8004.1179.1 0.23 -0.8
1,112,079 - Xcc-8004.1179.1 0.23 -0.4
1,112,159 + Xcc-8004.1179.1 0.29 +1.2
1,112,160 - Xcc-8004.1179.1 0.29 +0.7
1,112,256 + Xcc-8004.1179.1 0.36 -0.2
1,112,341 + Xcc-8004.1179.1 0.43 -1.2
1,112,342 - Xcc-8004.1179.1 0.43 +0.5
1,112,342 - Xcc-8004.1179.1 0.43 +1.8
1,112,516 + Xcc-8004.1179.1 0.56 -0.2
1,112,516 + Xcc-8004.1179.1 0.56 +1.4
1,112,516 + Xcc-8004.1179.1 0.56 -0.6
1,112,517 - Xcc-8004.1179.1 0.56 -1.6
1,112,517 - Xcc-8004.1179.1 0.56 -0.3
1,112,517 - Xcc-8004.1179.1 0.56 -1.4
1,112,517 - Xcc-8004.1179.1 0.56 -1.5
1,112,517 - Xcc-8004.1179.1 0.56 -0.4
1,112,527 + Xcc-8004.1179.1 0.57 -0.8
1,112,527 + Xcc-8004.1179.1 0.57 -1.8
1,112,527 + Xcc-8004.1179.1 0.57 +0.1
1,112,527 + Xcc-8004.1179.1 0.57 +0.8
1,112,528 - Xcc-8004.1179.1 0.57 +0.5
1,112,528 - Xcc-8004.1179.1 0.57 -1.2
1,112,528 - Xcc-8004.1179.1 0.57 +0.8
1,112,554 + Xcc-8004.1179.1 0.59 +0.6
1,112,555 - Xcc-8004.1179.1 0.59 -0.6
1,112,555 - Xcc-8004.1179.1 0.59 -0.2
1,112,707 + Xcc-8004.1179.1 0.70 +0.4
1,112,707 + Xcc-8004.1179.1 0.70 +1.5
1,112,707 + Xcc-8004.1179.1 0.70 +0.2
1,112,708 - Xcc-8004.1179.1 0.70 -0.8
1,112,809 + Xcc-8004.1179.1 0.78 -0.4
1,112,810 - Xcc-8004.1179.1 0.78 -1.6
1,112,810 - Xcc-8004.1179.1 0.78 -0.8
1,112,902 + Xcc-8004.1179.1 0.85 -1.2
1,112,902 + Xcc-8004.1179.1 0.85 -0.1
1,112,903 - Xcc-8004.1179.1 0.85 +0.8
1,112,903 - Xcc-8004.1179.1 0.85 +2.0
1,112,956 + Xcc-8004.1179.1 0.89 +1.7
1,112,956 + Xcc-8004.1179.1 0.89 +0.7
1,112,956 + Xcc-8004.1179.1 0.89 -0.2
1,112,957 - Xcc-8004.1179.1 0.89 +1.0
1,113,413 + -0.7
1,113,413 + -0.3
1,113,414 - +0.0
1,113,414 - -0.7
1,113,414 - +0.0

Or see this region's nucleotide sequence