Experiment: 1600 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.1008.1 and Xcc-8004.1009.1 are separated by 33 nucleotides Xcc-8004.1009.1 and Xcc-8004.1010.1 overlap by 1 nucleotides
Xcc-8004.1008.1: Xcc-8004.1008.1 - FIG01211317: hypothetical protein, at 953,427 to 954,122
Xcc-8004.1008.1
Xcc-8004.1009.1: Xcc-8004.1009.1 - Lysophospholipase L1 and related esterases, at 954,156 to 954,779
Xcc-8004.1009.1
Xcc-8004.1010.1: Xcc-8004.1010.1 - Aspartate aminotransferase (EC 2.6.1.1), at 954,779 to 956,050
Xcc-8004.1010.1
Position (kb) 954
955 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 953.285 kb on + strand at 953.285 kb on + strand at 953.306 kb on + strand at 953.306 kb on + strand at 953.307 kb on - strand at 953.307 kb on - strand at 953.307 kb on - strand at 953.310 kb on + strand at 953.311 kb on - strand at 953.545 kb on + strand, within Xcc-8004.1008.1 at 953.545 kb on + strand, within Xcc-8004.1008.1 at 953.546 kb on - strand, within Xcc-8004.1008.1 at 953.546 kb on - strand, within Xcc-8004.1008.1 at 953.723 kb on - strand, within Xcc-8004.1008.1 at 953.801 kb on + strand, within Xcc-8004.1008.1 at 953.964 kb on + strand, within Xcc-8004.1008.1 at 953.964 kb on + strand, within Xcc-8004.1008.1 at 953.964 kb on + strand, within Xcc-8004.1008.1 at 954.019 kb on + strand, within Xcc-8004.1008.1 at 954.020 kb on - strand, within Xcc-8004.1008.1 at 954.022 kb on + strand, within Xcc-8004.1008.1 at 954.022 kb on + strand, within Xcc-8004.1008.1 at 954.022 kb on + strand, within Xcc-8004.1008.1 at 954.023 kb on - strand, within Xcc-8004.1008.1 at 954.026 kb on - strand, within Xcc-8004.1008.1 at 954.026 kb on - strand, within Xcc-8004.1008.1 at 954.026 kb on - strand, within Xcc-8004.1008.1 at 954.031 kb on + strand, within Xcc-8004.1008.1 at 954.158 kb on - strand at 954.208 kb on + strand at 954.208 kb on + strand at 954.209 kb on - strand at 954.209 kb on - strand at 954.209 kb on - strand at 954.209 kb on - strand at 954.477 kb on + strand, within Xcc-8004.1009.1 at 954.477 kb on + strand, within Xcc-8004.1009.1 at 954.477 kb on + strand, within Xcc-8004.1009.1 at 954.662 kb on - strand, within Xcc-8004.1009.1 at 954.730 kb on + strand at 954.730 kb on + strand at 954.731 kb on - strand at 954.751 kb on + strand at 954.752 kb on - strand at 955.038 kb on + strand, within Xcc-8004.1010.1 at 955.039 kb on - strand, within Xcc-8004.1010.1 at 955.039 kb on - strand, within Xcc-8004.1010.1 at 955.392 kb on + strand, within Xcc-8004.1010.1 at 955.393 kb on - strand, within Xcc-8004.1010.1 at 955.407 kb on + strand, within Xcc-8004.1010.1 at 955.408 kb on - strand, within Xcc-8004.1010.1 at 955.408 kb on - strand, within Xcc-8004.1010.1 at 955.483 kb on - strand, within Xcc-8004.1010.1 at 955.599 kb on + strand, within Xcc-8004.1010.1 at 955.599 kb on + strand, within Xcc-8004.1010.1 at 955.602 kb on + strand, within Xcc-8004.1010.1 at 955.602 kb on + strand, within Xcc-8004.1010.1
Per-strain Table
Position Strand Gene LocusTag Fraction 1600 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together) remove 953,285 + -2.5 953,285 + +0.0 953,306 + +2.1 953,306 + -1.6 953,307 - +0.2 953,307 - -0.6 953,307 - +0.5 953,310 + -0.2 953,311 - -1.7 953,545 + Xcc-8004.1008.1 0.17 -2.2 953,545 + Xcc-8004.1008.1 0.17 +1.2 953,546 - Xcc-8004.1008.1 0.17 +1.2 953,546 - Xcc-8004.1008.1 0.17 +1.2 953,723 - Xcc-8004.1008.1 0.43 -0.7 953,801 + Xcc-8004.1008.1 0.54 -1.6 953,964 + Xcc-8004.1008.1 0.77 +0.7 953,964 + Xcc-8004.1008.1 0.77 -0.3 953,964 + Xcc-8004.1008.1 0.77 +0.4 954,019 + Xcc-8004.1008.1 0.85 -0.8 954,020 - Xcc-8004.1008.1 0.85 -2.2 954,022 + Xcc-8004.1008.1 0.85 -0.2 954,022 + Xcc-8004.1008.1 0.85 -0.4 954,022 + Xcc-8004.1008.1 0.85 +1.9 954,023 - Xcc-8004.1008.1 0.86 -1.0 954,026 - Xcc-8004.1008.1 0.86 -1.6 954,026 - Xcc-8004.1008.1 0.86 -1.8 954,026 - Xcc-8004.1008.1 0.86 -0.4 954,031 + Xcc-8004.1008.1 0.87 +3.0 954,158 - -1.0 954,208 + -1.8 954,208 + -0.4 954,209 - -0.9 954,209 - +0.2 954,209 - -0.6 954,209 - +0.6 954,477 + Xcc-8004.1009.1 0.51 -2.8 954,477 + Xcc-8004.1009.1 0.51 +3.6 954,477 + Xcc-8004.1009.1 0.51 -1.8 954,662 - Xcc-8004.1009.1 0.81 +2.4 954,730 + -1.5 954,730 + +0.3 954,731 - -1.4 954,751 + +1.2 954,752 - -3.0 955,038 + Xcc-8004.1010.1 0.20 -1.3 955,039 - Xcc-8004.1010.1 0.20 -2.7 955,039 - Xcc-8004.1010.1 0.20 -2.9 955,392 + Xcc-8004.1010.1 0.48 -2.0 955,393 - Xcc-8004.1010.1 0.48 -2.2 955,407 + Xcc-8004.1010.1 0.49 -0.2 955,408 - Xcc-8004.1010.1 0.49 -2.2 955,408 - Xcc-8004.1010.1 0.49 -1.7 955,483 - Xcc-8004.1010.1 0.55 -1.2 955,599 + Xcc-8004.1010.1 0.64 -2.5 955,599 + Xcc-8004.1010.1 0.64 -3.8 955,602 + Xcc-8004.1010.1 0.65 +0.9 955,602 + Xcc-8004.1010.1 0.65 -1.3
Or see this region's nucleotide sequence