Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS26920

Experiment: L-Glutamine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS26915 and RR42_RS26920 are separated by 313 nucleotidesRR42_RS26920 and RR42_RS26925 are separated by 293 nucleotidesRR42_RS26925 and RR42_RS26930 are separated by 191 nucleotides RR42_RS26915: RR42_RS26915 - AMP-binding protein, at 1,393,665 to 1,395,386 _RS26915 RR42_RS26920: RR42_RS26920 - TetR family transcriptional regulator, at 1,395,700 to 1,396,401 _RS26920 RR42_RS26925: RR42_RS26925 - membrane protein, at 1,396,695 to 1,396,847 _RS26925 RR42_RS26930: RR42_RS26930 - membrane protein, at 1,397,039 to 1,397,560 _RS26930 Position (kb) 1395 1396 1397Strain fitness (log2 ratio) -2 -1 0 1at 1394.724 kb on + strand, within RR42_RS26915at 1394.730 kb on + strand, within RR42_RS26915at 1394.732 kb on + strand, within RR42_RS26915at 1394.733 kb on - strand, within RR42_RS26915at 1394.821 kb on + strand, within RR42_RS26915at 1394.821 kb on + strand, within RR42_RS26915at 1394.822 kb on - strand, within RR42_RS26915at 1395.016 kb on + strand, within RR42_RS26915at 1395.016 kb on + strand, within RR42_RS26915at 1395.017 kb on - strand, within RR42_RS26915at 1395.017 kb on - strand, within RR42_RS26915at 1395.017 kb on - strand, within RR42_RS26915at 1395.386 kb on + strandat 1395.387 kb on - strandat 1395.413 kb on - strandat 1395.485 kb on + strandat 1395.485 kb on + strandat 1395.486 kb on - strandat 1395.507 kb on + strandat 1395.507 kb on + strandat 1395.507 kb on + strandat 1395.507 kb on + strandat 1395.507 kb on + strandat 1395.508 kb on - strandat 1395.508 kb on - strandat 1395.648 kb on - strandat 1395.663 kb on - strandat 1395.664 kb on + strandat 1395.690 kb on + strandat 1395.920 kb on - strand, within RR42_RS26920at 1396.115 kb on - strand, within RR42_RS26920at 1396.134 kb on + strand, within RR42_RS26920at 1396.135 kb on - strand, within RR42_RS26920at 1396.284 kb on + strand, within RR42_RS26920at 1396.310 kb on + strand, within RR42_RS26920at 1396.352 kb on - strandat 1396.399 kb on + strandat 1396.569 kb on + strandat 1396.825 kb on - strand, within RR42_RS26925at 1396.825 kb on - strand, within RR42_RS26925at 1396.917 kb on + strandat 1396.918 kb on - strandat 1396.981 kb on + strandat 1396.982 kb on - strandat 1396.982 kb on - strandat 1397.046 kb on - strandat 1397.193 kb on - strand, within RR42_RS26930at 1397.225 kb on + strand, within RR42_RS26930at 1397.226 kb on - strand, within RR42_RS26930at 1397.324 kb on + strand, within RR42_RS26930at 1397.324 kb on + strand, within RR42_RS26930at 1397.324 kb on + strand, within RR42_RS26930at 1397.324 kb on + strand, within RR42_RS26930at 1397.324 kb on + strand, within RR42_RS26930at 1397.325 kb on - strand, within RR42_RS26930at 1397.399 kb on + strand, within RR42_RS26930

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (C)
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1,394,724 + RR42_RS26915 0.61 +0.1
1,394,730 + RR42_RS26915 0.62 +0.1
1,394,732 + RR42_RS26915 0.62 -0.0
1,394,733 - RR42_RS26915 0.62 +0.2
1,394,821 + RR42_RS26915 0.67 +0.5
1,394,821 + RR42_RS26915 0.67 -0.3
1,394,822 - RR42_RS26915 0.67 -0.0
1,395,016 + RR42_RS26915 0.78 -0.3
1,395,016 + RR42_RS26915 0.78 +0.2
1,395,017 - RR42_RS26915 0.79 +0.0
1,395,017 - RR42_RS26915 0.79 -1.1
1,395,017 - RR42_RS26915 0.79 -1.0
1,395,386 + -0.4
1,395,387 - +0.6
1,395,413 - -1.3
1,395,485 + +0.5
1,395,485 + +1.6
1,395,486 - +0.4
1,395,507 + +0.3
1,395,507 + -0.4
1,395,507 + +0.6
1,395,507 + -1.6
1,395,507 + +0.6
1,395,508 - +0.1
1,395,508 - +0.2
1,395,648 - -2.1
1,395,663 - -0.3
1,395,664 + +0.1
1,395,690 + -0.3
1,395,920 - RR42_RS26920 0.31 -0.6
1,396,115 - RR42_RS26920 0.59 -1.0
1,396,134 + RR42_RS26920 0.62 -1.1
1,396,135 - RR42_RS26920 0.62 -1.5
1,396,284 + RR42_RS26920 0.83 -1.1
1,396,310 + RR42_RS26920 0.87 +0.3
1,396,352 - +0.2
1,396,399 + -0.7
1,396,569 + +0.4
1,396,825 - RR42_RS26925 0.85 -0.2
1,396,825 - RR42_RS26925 0.85 +0.3
1,396,917 + -0.0
1,396,918 - +0.7
1,396,981 + -0.2
1,396,982 - -0.3
1,396,982 - +0.4
1,397,046 - +0.0
1,397,193 - RR42_RS26930 0.30 -0.5
1,397,225 + RR42_RS26930 0.36 +0.3
1,397,226 - RR42_RS26930 0.36 -0.4
1,397,324 + RR42_RS26930 0.55 +0.7
1,397,324 + RR42_RS26930 0.55 +0.6
1,397,324 + RR42_RS26930 0.55 -0.3
1,397,324 + RR42_RS26930 0.55 -0.9
1,397,324 + RR42_RS26930 0.55 +0.6
1,397,325 - RR42_RS26930 0.55 -0.4
1,397,399 + RR42_RS26930 0.69 +0.3

Or see this region's nucleotide sequence