Experiment: L-Glutamine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS22085 and RR42_RS22090 are separated by 41 nucleotides RR42_RS22090 and RR42_RS22095 are separated by 41 nucleotides
RR42_RS22085: RR42_RS22085 - hypothetical protein, at 290,949 to 292,058
_RS22085
RR42_RS22090: RR42_RS22090 - hypothetical protein, at 292,100 to 293,173
_RS22090
RR42_RS22095: RR42_RS22095 - hypothetical protein, at 293,215 to 294,285
_RS22095
Position (kb)
292
293
294 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 291.173 kb on + strand, within RR42_RS22085 at 291.174 kb on - strand, within RR42_RS22085 at 291.186 kb on - strand, within RR42_RS22085 at 291.251 kb on + strand, within RR42_RS22085 at 291.251 kb on + strand, within RR42_RS22085 at 291.251 kb on + strand, within RR42_RS22085 at 291.252 kb on - strand, within RR42_RS22085 at 291.270 kb on + strand, within RR42_RS22085 at 291.270 kb on + strand, within RR42_RS22085 at 291.270 kb on + strand, within RR42_RS22085 at 291.295 kb on + strand, within RR42_RS22085 at 291.421 kb on - strand, within RR42_RS22085 at 291.481 kb on + strand, within RR42_RS22085 at 292.426 kb on + strand, within RR42_RS22090 at 292.427 kb on - strand, within RR42_RS22090 at 292.427 kb on - strand, within RR42_RS22090 at 292.535 kb on + strand, within RR42_RS22090 at 292.536 kb on - strand, within RR42_RS22090 at 292.536 kb on - strand, within RR42_RS22090 at 292.643 kb on + strand, within RR42_RS22090 at 293.371 kb on + strand, within RR42_RS22095 at 293.380 kb on + strand, within RR42_RS22095 at 293.381 kb on - strand, within RR42_RS22095 at 293.386 kb on + strand, within RR42_RS22095 at 293.386 kb on + strand, within RR42_RS22095 at 293.387 kb on - strand, within RR42_RS22095 at 293.387 kb on - strand, within RR42_RS22095 at 293.404 kb on + strand, within RR42_RS22095 at 293.406 kb on + strand, within RR42_RS22095 at 293.407 kb on - strand, within RR42_RS22095 at 293.490 kb on - strand, within RR42_RS22095 at 293.541 kb on + strand, within RR42_RS22095 at 293.542 kb on - strand, within RR42_RS22095 at 293.542 kb on - strand, within RR42_RS22095 at 293.542 kb on - strand, within RR42_RS22095 at 293.542 kb on - strand, within RR42_RS22095 at 293.629 kb on + strand, within RR42_RS22095 at 293.629 kb on + strand, within RR42_RS22095 at 293.738 kb on + strand, within RR42_RS22095 at 294.072 kb on - strand, within RR42_RS22095
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (C) remove 291,173 + RR42_RS22085 0.20 -0.3 291,174 - RR42_RS22085 0.20 +0.5 291,186 - RR42_RS22085 0.21 +0.3 291,251 + RR42_RS22085 0.27 -1.0 291,251 + RR42_RS22085 0.27 +0.8 291,251 + RR42_RS22085 0.27 -0.6 291,252 - RR42_RS22085 0.27 -0.8 291,270 + RR42_RS22085 0.29 -0.8 291,270 + RR42_RS22085 0.29 -0.3 291,270 + RR42_RS22085 0.29 -1.3 291,295 + RR42_RS22085 0.31 +1.9 291,421 - RR42_RS22085 0.43 +0.6 291,481 + RR42_RS22085 0.48 +1.0 292,426 + RR42_RS22090 0.30 -1.3 292,427 - RR42_RS22090 0.30 +0.2 292,427 - RR42_RS22090 0.30 -1.5 292,535 + RR42_RS22090 0.41 -0.1 292,536 - RR42_RS22090 0.41 -0.5 292,536 - RR42_RS22090 0.41 -1.5 292,643 + RR42_RS22090 0.51 +0.2 293,371 + RR42_RS22095 0.15 +0.1 293,380 + RR42_RS22095 0.15 -1.2 293,381 - RR42_RS22095 0.15 +0.1 293,386 + RR42_RS22095 0.16 -0.6 293,386 + RR42_RS22095 0.16 +1.1 293,387 - RR42_RS22095 0.16 -1.1 293,387 - RR42_RS22095 0.16 -0.4 293,404 + RR42_RS22095 0.18 +0.1 293,406 + RR42_RS22095 0.18 -1.3 293,407 - RR42_RS22095 0.18 +0.3 293,490 - RR42_RS22095 0.26 +0.2 293,541 + RR42_RS22095 0.30 -0.0 293,542 - RR42_RS22095 0.31 +0.1 293,542 - RR42_RS22095 0.31 -0.1 293,542 - RR42_RS22095 0.31 +0.1 293,542 - RR42_RS22095 0.31 -3.0 293,629 + RR42_RS22095 0.39 +0.3 293,629 + RR42_RS22095 0.39 +0.5 293,738 + RR42_RS22095 0.49 +0.7 294,072 - RR42_RS22095 0.80 +1.7
Or see this region's nucleotide sequence