Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS22090

Experiment: L-Glutamine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS22085 and RR42_RS22090 are separated by 41 nucleotidesRR42_RS22090 and RR42_RS22095 are separated by 41 nucleotides RR42_RS22085: RR42_RS22085 - hypothetical protein, at 290,949 to 292,058 _RS22085 RR42_RS22090: RR42_RS22090 - hypothetical protein, at 292,100 to 293,173 _RS22090 RR42_RS22095: RR42_RS22095 - hypothetical protein, at 293,215 to 294,285 _RS22095 Position (kb) 292 293 294Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 291.173 kb on + strand, within RR42_RS22085at 291.174 kb on - strand, within RR42_RS22085at 291.186 kb on - strand, within RR42_RS22085at 291.251 kb on + strand, within RR42_RS22085at 291.251 kb on + strand, within RR42_RS22085at 291.251 kb on + strand, within RR42_RS22085at 291.252 kb on - strand, within RR42_RS22085at 291.270 kb on + strand, within RR42_RS22085at 291.270 kb on + strand, within RR42_RS22085at 291.270 kb on + strand, within RR42_RS22085at 291.295 kb on + strand, within RR42_RS22085at 291.421 kb on - strand, within RR42_RS22085at 291.481 kb on + strand, within RR42_RS22085at 292.426 kb on + strand, within RR42_RS22090at 292.427 kb on - strand, within RR42_RS22090at 292.427 kb on - strand, within RR42_RS22090at 292.535 kb on + strand, within RR42_RS22090at 292.536 kb on - strand, within RR42_RS22090at 292.536 kb on - strand, within RR42_RS22090at 292.643 kb on + strand, within RR42_RS22090at 293.371 kb on + strand, within RR42_RS22095at 293.380 kb on + strand, within RR42_RS22095at 293.381 kb on - strand, within RR42_RS22095at 293.386 kb on + strand, within RR42_RS22095at 293.386 kb on + strand, within RR42_RS22095at 293.387 kb on - strand, within RR42_RS22095at 293.387 kb on - strand, within RR42_RS22095at 293.404 kb on + strand, within RR42_RS22095at 293.406 kb on + strand, within RR42_RS22095at 293.407 kb on - strand, within RR42_RS22095at 293.490 kb on - strand, within RR42_RS22095at 293.541 kb on + strand, within RR42_RS22095at 293.542 kb on - strand, within RR42_RS22095at 293.542 kb on - strand, within RR42_RS22095at 293.542 kb on - strand, within RR42_RS22095at 293.542 kb on - strand, within RR42_RS22095at 293.629 kb on + strand, within RR42_RS22095at 293.629 kb on + strand, within RR42_RS22095at 293.738 kb on + strand, within RR42_RS22095at 294.072 kb on - strand, within RR42_RS22095

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (C)
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291,173 + RR42_RS22085 0.20 -0.3
291,174 - RR42_RS22085 0.20 +0.5
291,186 - RR42_RS22085 0.21 +0.3
291,251 + RR42_RS22085 0.27 -1.0
291,251 + RR42_RS22085 0.27 +0.8
291,251 + RR42_RS22085 0.27 -0.6
291,252 - RR42_RS22085 0.27 -0.8
291,270 + RR42_RS22085 0.29 -0.8
291,270 + RR42_RS22085 0.29 -0.3
291,270 + RR42_RS22085 0.29 -1.3
291,295 + RR42_RS22085 0.31 +1.9
291,421 - RR42_RS22085 0.43 +0.6
291,481 + RR42_RS22085 0.48 +1.0
292,426 + RR42_RS22090 0.30 -1.3
292,427 - RR42_RS22090 0.30 +0.2
292,427 - RR42_RS22090 0.30 -1.5
292,535 + RR42_RS22090 0.41 -0.1
292,536 - RR42_RS22090 0.41 -0.5
292,536 - RR42_RS22090 0.41 -1.5
292,643 + RR42_RS22090 0.51 +0.2
293,371 + RR42_RS22095 0.15 +0.1
293,380 + RR42_RS22095 0.15 -1.2
293,381 - RR42_RS22095 0.15 +0.1
293,386 + RR42_RS22095 0.16 -0.6
293,386 + RR42_RS22095 0.16 +1.1
293,387 - RR42_RS22095 0.16 -1.1
293,387 - RR42_RS22095 0.16 -0.4
293,404 + RR42_RS22095 0.18 +0.1
293,406 + RR42_RS22095 0.18 -1.3
293,407 - RR42_RS22095 0.18 +0.3
293,490 - RR42_RS22095 0.26 +0.2
293,541 + RR42_RS22095 0.30 -0.0
293,542 - RR42_RS22095 0.31 +0.1
293,542 - RR42_RS22095 0.31 -0.1
293,542 - RR42_RS22095 0.31 +0.1
293,542 - RR42_RS22095 0.31 -3.0
293,629 + RR42_RS22095 0.39 +0.3
293,629 + RR42_RS22095 0.39 +0.5
293,738 + RR42_RS22095 0.49 +0.7
294,072 - RR42_RS22095 0.80 +1.7

Or see this region's nucleotide sequence