Experiment: L-Glutamine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS16400 and RR42_RS16405 are separated by 55 nucleotides RR42_RS16405 and RR42_RS16410 are separated by 974 nucleotides
RR42_RS16400: RR42_RS16400 - chitin deacetylase, at 3,550,284 to 3,551,219
_RS16400
RR42_RS16405: RR42_RS16405 - hypothetical protein, at 3,551,275 to 3,551,715
_RS16405
RR42_RS16410: RR42_RS16410 - LysR family transcriptional regulator, at 3,552,690 to 3,553,595
_RS16410
Position (kb)
3551
3552 Strain fitness (log2 ratio)
-1
0
1
2 at 3550.520 kb on - strand, within RR42_RS16400 at 3550.520 kb on - strand, within RR42_RS16400 at 3550.520 kb on - strand, within RR42_RS16400 at 3550.525 kb on + strand, within RR42_RS16400 at 3550.631 kb on - strand, within RR42_RS16400 at 3550.690 kb on - strand, within RR42_RS16400 at 3550.934 kb on + strand, within RR42_RS16400 at 3551.048 kb on + strand, within RR42_RS16400 at 3551.049 kb on - strand, within RR42_RS16400 at 3551.049 kb on - strand, within RR42_RS16400 at 3551.176 kb on + strand at 3551.177 kb on - strand at 3551.177 kb on - strand at 3551.347 kb on + strand, within RR42_RS16405 at 3551.474 kb on + strand, within RR42_RS16405 at 3551.475 kb on - strand, within RR42_RS16405 at 3551.743 kb on - strand at 3551.957 kb on - strand at 3552.051 kb on - strand at 3552.051 kb on - strand at 3552.059 kb on + strand at 3552.069 kb on - strand at 3552.086 kb on + strand at 3552.141 kb on + strand at 3552.141 kb on + strand at 3552.225 kb on + strand at 3552.225 kb on + strand at 3552.226 kb on - strand at 3552.237 kb on + strand at 3552.293 kb on + strand at 3552.337 kb on + strand at 3552.338 kb on - strand at 3552.350 kb on + strand at 3552.350 kb on + strand at 3552.351 kb on - strand at 3552.351 kb on - strand at 3552.351 kb on - strand at 3552.351 kb on - strand at 3552.458 kb on + strand at 3552.458 kb on + strand at 3552.458 kb on + strand at 3552.513 kb on + strand at 3552.513 kb on + strand at 3552.513 kb on + strand at 3552.513 kb on + strand at 3552.514 kb on - strand at 3552.514 kb on - strand at 3552.588 kb on - strand at 3552.588 kb on - strand at 3552.588 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (C) remove 3,550,520 - RR42_RS16400 0.25 -0.1 3,550,520 - RR42_RS16400 0.25 +0.2 3,550,520 - RR42_RS16400 0.25 -0.6 3,550,525 + RR42_RS16400 0.26 -0.1 3,550,631 - RR42_RS16400 0.37 -0.2 3,550,690 - RR42_RS16400 0.43 +0.0 3,550,934 + RR42_RS16400 0.69 +0.2 3,551,048 + RR42_RS16400 0.82 +0.8 3,551,049 - RR42_RS16400 0.82 -0.7 3,551,049 - RR42_RS16400 0.82 -0.2 3,551,176 + -0.6 3,551,177 - -0.3 3,551,177 - +0.1 3,551,347 + RR42_RS16405 0.16 -0.6 3,551,474 + RR42_RS16405 0.45 -1.1 3,551,475 - RR42_RS16405 0.45 -0.6 3,551,743 - -0.1 3,551,957 - -0.3 3,552,051 - -0.3 3,552,051 - +0.7 3,552,059 + -1.2 3,552,069 - -0.0 3,552,086 + +0.6 3,552,141 + +0.1 3,552,141 + +0.1 3,552,225 + +0.8 3,552,225 + -0.1 3,552,226 - -0.8 3,552,237 + +0.3 3,552,293 + +0.4 3,552,337 + +0.3 3,552,338 - +0.4 3,552,350 + -1.3 3,552,350 + -0.3 3,552,351 - -0.3 3,552,351 - +0.2 3,552,351 - -0.4 3,552,351 - +0.4 3,552,458 + +0.8 3,552,458 + -0.3 3,552,458 + -0.6 3,552,513 + +0.0 3,552,513 + +0.6 3,552,513 + -0.4 3,552,513 + +0.6 3,552,514 - -0.7 3,552,514 - +0.8 3,552,588 - +2.1 3,552,588 - +0.7 3,552,588 - +0.6
Or see this region's nucleotide sequence