Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS16405

Experiment: L-Glutamine (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRR42_RS16400 and RR42_RS16405 are separated by 55 nucleotidesRR42_RS16405 and RR42_RS16410 are separated by 974 nucleotides RR42_RS16400: RR42_RS16400 - chitin deacetylase, at 3,550,284 to 3,551,219 _RS16400 RR42_RS16405: RR42_RS16405 - hypothetical protein, at 3,551,275 to 3,551,715 _RS16405 RR42_RS16410: RR42_RS16410 - LysR family transcriptional regulator, at 3,552,690 to 3,553,595 _RS16410 Position (kb) 3551 3552Strain fitness (log2 ratio) -1 0 1 2at 3550.520 kb on - strand, within RR42_RS16400at 3550.520 kb on - strand, within RR42_RS16400at 3550.520 kb on - strand, within RR42_RS16400at 3550.525 kb on + strand, within RR42_RS16400at 3550.631 kb on - strand, within RR42_RS16400at 3550.690 kb on - strand, within RR42_RS16400at 3550.934 kb on + strand, within RR42_RS16400at 3551.048 kb on + strand, within RR42_RS16400at 3551.049 kb on - strand, within RR42_RS16400at 3551.049 kb on - strand, within RR42_RS16400at 3551.176 kb on + strandat 3551.177 kb on - strandat 3551.177 kb on - strandat 3551.347 kb on + strand, within RR42_RS16405at 3551.474 kb on + strand, within RR42_RS16405at 3551.475 kb on - strand, within RR42_RS16405at 3551.743 kb on - strandat 3551.957 kb on - strandat 3552.051 kb on - strandat 3552.051 kb on - strandat 3552.059 kb on + strandat 3552.069 kb on - strandat 3552.086 kb on + strandat 3552.141 kb on + strandat 3552.141 kb on + strandat 3552.225 kb on + strandat 3552.225 kb on + strandat 3552.226 kb on - strandat 3552.237 kb on + strandat 3552.293 kb on + strandat 3552.337 kb on + strandat 3552.338 kb on - strandat 3552.350 kb on + strandat 3552.350 kb on + strandat 3552.351 kb on - strandat 3552.351 kb on - strandat 3552.351 kb on - strandat 3552.351 kb on - strandat 3552.458 kb on + strandat 3552.458 kb on + strandat 3552.458 kb on + strandat 3552.513 kb on + strandat 3552.513 kb on + strandat 3552.513 kb on + strandat 3552.513 kb on + strandat 3552.514 kb on - strandat 3552.514 kb on - strandat 3552.588 kb on - strandat 3552.588 kb on - strandat 3552.588 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (C)
remove
3,550,520 - RR42_RS16400 0.25 -0.1
3,550,520 - RR42_RS16400 0.25 +0.2
3,550,520 - RR42_RS16400 0.25 -0.6
3,550,525 + RR42_RS16400 0.26 -0.1
3,550,631 - RR42_RS16400 0.37 -0.2
3,550,690 - RR42_RS16400 0.43 +0.0
3,550,934 + RR42_RS16400 0.69 +0.2
3,551,048 + RR42_RS16400 0.82 +0.8
3,551,049 - RR42_RS16400 0.82 -0.7
3,551,049 - RR42_RS16400 0.82 -0.2
3,551,176 + -0.6
3,551,177 - -0.3
3,551,177 - +0.1
3,551,347 + RR42_RS16405 0.16 -0.6
3,551,474 + RR42_RS16405 0.45 -1.1
3,551,475 - RR42_RS16405 0.45 -0.6
3,551,743 - -0.1
3,551,957 - -0.3
3,552,051 - -0.3
3,552,051 - +0.7
3,552,059 + -1.2
3,552,069 - -0.0
3,552,086 + +0.6
3,552,141 + +0.1
3,552,141 + +0.1
3,552,225 + +0.8
3,552,225 + -0.1
3,552,226 - -0.8
3,552,237 + +0.3
3,552,293 + +0.4
3,552,337 + +0.3
3,552,338 - +0.4
3,552,350 + -1.3
3,552,350 + -0.3
3,552,351 - -0.3
3,552,351 - +0.2
3,552,351 - -0.4
3,552,351 - +0.4
3,552,458 + +0.8
3,552,458 + -0.3
3,552,458 + -0.6
3,552,513 + +0.0
3,552,513 + +0.6
3,552,513 + -0.4
3,552,513 + +0.6
3,552,514 - -0.7
3,552,514 - +0.8
3,552,588 - +2.1
3,552,588 - +0.7
3,552,588 - +0.6

Or see this region's nucleotide sequence