Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS02775

Experiment: L-Glutamine (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRR42_RS02770 and RR42_RS02775 are separated by 9 nucleotidesRR42_RS02775 and RR42_RS02780 are separated by 18 nucleotides RR42_RS02770: RR42_RS02770 - LPS biosynthesis protein, at 615,496 to 617,904 _RS02770 RR42_RS02775: RR42_RS02775 - molecular chaperone SurA, at 617,914 to 619,404 _RS02775 RR42_RS02780: RR42_RS02780 - 4-hydroxythreonine-4-phosphate dehydrogenase, at 619,423 to 620,472 _RS02780 Position (kb) 617 618 619 620Strain fitness (log2 ratio) -1 0 1at 617.874 kb on + strandat 617.896 kb on + strandat 617.896 kb on + strandat 617.896 kb on + strandat 618.466 kb on + strand, within RR42_RS02775at 618.466 kb on + strand, within RR42_RS02775at 618.562 kb on + strand, within RR42_RS02775at 619.336 kb on + strandat 619.381 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (C)
remove
617,874 + +0.4
617,896 + +1.5
617,896 + -0.3
617,896 + -0.9
618,466 + RR42_RS02775 0.37 -0.5
618,466 + RR42_RS02775 0.37 -1.2
618,562 + RR42_RS02775 0.43 -1.6
619,336 + +0.3
619,381 + +0.1

Or see this region's nucleotide sequence