Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS01915

Experiment: L-Glutamine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS01905 and RR42_RS01910 are separated by 109 nucleotidesRR42_RS01910 and RR42_RS01915 are separated by 7 nucleotidesRR42_RS01915 and RR42_RS01920 overlap by 4 nucleotides RR42_RS01905: RR42_RS01905 - cytochrome C oxidase subunit II, at 428,087 to 428,848 _RS01905 RR42_RS01910: RR42_RS01910 - cytochrome C oxidase subunit I, at 428,958 to 429,614 _RS01910 RR42_RS01915: RR42_RS01915 - cytochrome C oxidase subunit I, at 429,622 to 430,725 _RS01915 RR42_RS01920: RR42_RS01920 - protoheme IX farnesyltransferase, at 430,722 to 431,657 _RS01920 Position (kb) 429 430 431Strain fitness (log2 ratio) -3 -2 -1 0 1at 428.640 kb on - strand, within RR42_RS01905at 428.640 kb on - strand, within RR42_RS01905at 428.753 kb on + strand, within RR42_RS01905at 428.754 kb on - strand, within RR42_RS01905at 428.760 kb on - strand, within RR42_RS01905at 428.957 kb on + strandat 428.957 kb on + strandat 428.957 kb on + strandat 428.957 kb on + strandat 428.958 kb on - strandat 428.958 kb on - strandat 428.958 kb on - strandat 428.958 kb on - strandat 429.096 kb on + strand, within RR42_RS01910at 429.105 kb on + strand, within RR42_RS01910at 429.105 kb on + strand, within RR42_RS01910at 429.105 kb on + strand, within RR42_RS01910at 429.106 kb on - strand, within RR42_RS01910at 429.108 kb on + strand, within RR42_RS01910at 429.108 kb on + strand, within RR42_RS01910at 429.108 kb on + strand, within RR42_RS01910at 429.109 kb on - strand, within RR42_RS01910at 429.109 kb on - strand, within RR42_RS01910at 429.109 kb on - strand, within RR42_RS01910at 429.141 kb on + strand, within RR42_RS01910at 429.141 kb on + strand, within RR42_RS01910at 429.142 kb on - strand, within RR42_RS01910at 429.142 kb on - strand, within RR42_RS01910at 429.154 kb on - strand, within RR42_RS01910at 429.403 kb on - strand, within RR42_RS01910at 429.597 kb on + strandat 429.598 kb on - strandat 429.676 kb on + strandat 429.677 kb on - strandat 429.677 kb on - strandat 429.677 kb on - strandat 429.677 kb on - strandat 429.677 kb on - strandat 429.677 kb on - strandat 429.818 kb on - strand, within RR42_RS01915at 429.929 kb on - strand, within RR42_RS01915at 429.929 kb on - strand, within RR42_RS01915at 430.273 kb on - strand, within RR42_RS01915at 430.276 kb on + strand, within RR42_RS01915at 430.276 kb on + strand, within RR42_RS01915at 430.393 kb on + strand, within RR42_RS01915at 430.394 kb on - strand, within RR42_RS01915at 430.394 kb on - strand, within RR42_RS01915at 430.394 kb on - strand, within RR42_RS01915at 430.655 kb on - strandat 430.659 kb on + strandat 430.659 kb on + strandat 430.659 kb on + strandat 430.659 kb on + strandat 430.659 kb on + strandat 430.661 kb on + strandat 430.661 kb on + strandat 430.661 kb on + strandat 430.662 kb on - strandat 430.754 kb on + strandat 431.094 kb on + strand, within RR42_RS01920at 431.155 kb on - strand, within RR42_RS01920at 431.155 kb on - strand, within RR42_RS01920at 431.426 kb on + strand, within RR42_RS01920at 431.466 kb on - strand, within RR42_RS01920at 431.481 kb on + strand, within RR42_RS01920at 431.548 kb on - strand, within RR42_RS01920at 431.592 kb on + strandat 431.592 kb on + strandat 431.592 kb on + strandat 431.631 kb on + strandat 431.631 kb on + strandat 431.632 kb on - strandat 431.632 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (C)
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428,640 - RR42_RS01905 0.73 -0.6
428,640 - RR42_RS01905 0.73 -1.6
428,753 + RR42_RS01905 0.87 -0.8
428,754 - RR42_RS01905 0.88 -1.0
428,760 - RR42_RS01905 0.88 +0.8
428,957 + +0.8
428,957 + +0.6
428,957 + -0.2
428,957 + +0.3
428,958 - -0.6
428,958 - -1.9
428,958 - +0.9
428,958 - -2.0
429,096 + RR42_RS01910 0.21 +0.3
429,105 + RR42_RS01910 0.22 -0.2
429,105 + RR42_RS01910 0.22 -0.8
429,105 + RR42_RS01910 0.22 -1.8
429,106 - RR42_RS01910 0.23 -1.6
429,108 + RR42_RS01910 0.23 -1.5
429,108 + RR42_RS01910 0.23 +0.2
429,108 + RR42_RS01910 0.23 -0.0
429,109 - RR42_RS01910 0.23 -1.6
429,109 - RR42_RS01910 0.23 -1.8
429,109 - RR42_RS01910 0.23 +1.2
429,141 + RR42_RS01910 0.28 +0.3
429,141 + RR42_RS01910 0.28 +0.4
429,142 - RR42_RS01910 0.28 -2.5
429,142 - RR42_RS01910 0.28 -2.2
429,154 - RR42_RS01910 0.30 -2.5
429,403 - RR42_RS01910 0.68 -1.2
429,597 + +0.0
429,598 - -0.9
429,676 + +1.2
429,677 - -2.0
429,677 - -0.1
429,677 - +0.1
429,677 - -0.8
429,677 - -0.3
429,677 - -0.8
429,818 - RR42_RS01915 0.18 -1.2
429,929 - RR42_RS01915 0.28 -1.6
429,929 - RR42_RS01915 0.28 -1.2
430,273 - RR42_RS01915 0.59 +0.0
430,276 + RR42_RS01915 0.59 -2.4
430,276 + RR42_RS01915 0.59 -2.7
430,393 + RR42_RS01915 0.70 -1.4
430,394 - RR42_RS01915 0.70 -2.4
430,394 - RR42_RS01915 0.70 -0.4
430,394 - RR42_RS01915 0.70 -1.5
430,655 - +0.2
430,659 + -1.2
430,659 + +0.2
430,659 + -1.0
430,659 + -0.0
430,659 + -0.0
430,661 + +0.8
430,661 + -0.4
430,661 + +0.1
430,662 - +1.2
430,754 + -2.0
431,094 + RR42_RS01920 0.40 -2.2
431,155 - RR42_RS01920 0.46 +0.2
431,155 - RR42_RS01920 0.46 -1.2
431,426 + RR42_RS01920 0.75 -3.7
431,466 - RR42_RS01920 0.79 -0.8
431,481 + RR42_RS01920 0.81 -1.8
431,548 - RR42_RS01920 0.88 -1.2
431,592 + -2.4
431,592 + -2.0
431,592 + -3.4
431,631 + +0.3
431,631 + +0.3
431,632 - -1.5
431,632 - -0.1

Or see this region's nucleotide sequence