Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4662

Experiment: apoplastic, sonication recovery; Green bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	apoplastic, sonication recovery; Green bean
5,522,243	+				-1.4
5,522,263	+				-0.6
5,522,393	-				-1.2
5,522,428	+				+0.5
5,522,501	+				-1.5
5,522,501	+				+0.0
5,522,501	+				+0.5
5,522,501	+				+1.6
5,522,501	+				-2.3
5,522,501	+				+1.2
5,522,501	+				-0.9
5,522,502	-				+0.6
5,522,502	-				-0.1
5,522,502	-				-1.6
5,522,502	-				+1.2
5,523,022	+		Psyr_4661	0.88	-1.5
5,523,022	+		Psyr_4661	0.88	-1.2
5,523,022	+		Psyr_4661	0.88	+1.5
5,523,022	+		Psyr_4661	0.88	-1.8
5,523,022	+		Psyr_4661	0.88	+0.8
5,523,022	+		Psyr_4661	0.88	-2.6
5,523,022	+		Psyr_4661	0.88	+2.4
5,523,022	+		Psyr_4661	0.88	-2.8
5,523,023	-		Psyr_4661	0.88	-0.9
5,523,023	-		Psyr_4661	0.88	+1.2
5,523,023	-		Psyr_4661	0.88	-0.0
5,523,023	-		Psyr_4661	0.88	+1.5
5,523,023	-		Psyr_4661	0.88	-2.9
5,523,023	-		Psyr_4661	0.88	+0.1
5,523,023	-		Psyr_4661	0.88	-2.3
5,523,023	-		Psyr_4661	0.88	-0.0
5,523,023	-		Psyr_4661	0.88	-1.3
5,523,023	-		Psyr_4661	0.88	-0.7
5,523,023	-		Psyr_4661	0.88	-1.4
5,523,023	-		Psyr_4661	0.88	-0.4
5,523,023	-		Psyr_4661	0.88	-1.9
5,523,023	-		Psyr_4661	0.88	-1.5
5,523,215	-				+1.3
5,523,215	-				-0.9
5,523,215	-				-0.6
5,523,241	+				+0.6
5,523,241	+				-0.4
5,523,241	+				+0.5
5,523,241	+				-0.4
5,523,241	+				-0.8
5,523,241	+				+0.8
5,523,242	-				-0.7
5,523,242	-				+4.5
5,523,242	-				-1.6
5,523,242	-				-2.3
5,523,242	-				-3.3
5,523,242	-				-0.4
5,523,242	-				+0.4
5,523,242	-				-0.4
5,523,242	-				+4.2
5,523,242	-				+1.4
5,523,242	-				+1.0
5,523,333	-				+0.7
5,523,385	+				-1.2
5,523,385	+				+0.0
5,523,385	+				-1.6
5,523,385	+				-0.7
5,523,385	+				+2.9
5,523,385	+				+0.2
5,523,386	-				+2.0
5,523,386	-				-3.1
5,523,386	-				-1.0
5,523,386	-				+1.4
5,523,454	+				-0.8
5,523,487	+				-2.8
5,523,516	+		Psyr_4662	0.10	-0.7
5,523,517	-		Psyr_4662	0.10	+1.1
5,523,517	-		Psyr_4662	0.10	+2.7
5,523,610	+		Psyr_4662	0.13	-0.2
5,523,611	-		Psyr_4662	0.13	+0.5
5,523,611	-		Psyr_4662	0.13	-1.6
5,523,634	+		Psyr_4662	0.13	+1.9
5,523,634	+		Psyr_4662	0.13	-2.2
5,523,634	+		Psyr_4662	0.13	+0.7
5,523,873	+		Psyr_4662	0.19	-0.2
5,523,873	+		Psyr_4662	0.19	-1.4
5,523,874	-		Psyr_4662	0.19	+2.3
5,523,930	+		Psyr_4662	0.21	-0.6
5,523,931	-		Psyr_4662	0.21	+0.5
5,523,949	+		Psyr_4662	0.21	-1.2
5,523,950	-		Psyr_4662	0.21	-0.7
5,523,950	-		Psyr_4662	0.21	-1.2
5,523,950	-		Psyr_4662	0.21	-2.2
5,524,125	+		Psyr_4662	0.25	+3.1
5,524,162	+		Psyr_4662	0.26	-0.6
5,524,162	+		Psyr_4662	0.26	+0.7
5,524,163	-		Psyr_4662	0.26	+0.8
5,524,163	-		Psyr_4662	0.26	-1.2
5,524,163	-		Psyr_4662	0.26	+0.4
5,524,163	-		Psyr_4662	0.26	+1.4
5,524,163	-		Psyr_4662	0.26	+0.7
5,524,174	+		Psyr_4662	0.27	-1.5
5,524,174	+		Psyr_4662	0.27	-0.5
5,524,174	+		Psyr_4662	0.27	-2.7
5,524,174	+		Psyr_4662	0.27	+0.3
5,524,175	-		Psyr_4662	0.27	-1.5
5,524,175	-		Psyr_4662	0.27	+2.4
5,524,237	+		Psyr_4662	0.28	+5.0
5,524,237	+		Psyr_4662	0.28	-2.6
5,524,237	+		Psyr_4662	0.28	+0.9
5,524,237	+		Psyr_4662	0.28	+0.3
5,524,237	+		Psyr_4662	0.28	+1.5
5,524,237	+		Psyr_4662	0.28	-1.1
5,524,238	-		Psyr_4662	0.28	+0.0
5,524,238	-		Psyr_4662	0.28	-0.4
5,524,238	-		Psyr_4662	0.28	-2.5
5,524,241	+		Psyr_4662	0.28	-0.4
5,524,241	+		Psyr_4662	0.28	-2.6
5,524,242	-		Psyr_4662	0.28	-1.4
5,524,242	-		Psyr_4662	0.28	+1.7
5,524,242	-		Psyr_4662	0.28	+1.7
5,524,242	-		Psyr_4662	0.28	+1.9
5,524,364	-		Psyr_4662	0.31	+1.0
5,524,702	+		Psyr_4662	0.40	+0.9
5,524,702	+		Psyr_4662	0.40	+0.1
5,524,702	+		Psyr_4662	0.40	-1.5
5,524,702	+		Psyr_4662	0.40	+0.2
5,524,702	+		Psyr_4662	0.40	+0.5
5,524,703	-		Psyr_4662	0.40	-0.3
5,524,703	-		Psyr_4662	0.40	-1.4
5,524,703	-		Psyr_4662	0.40	-1.0
5,524,703	-		Psyr_4662	0.40	-0.3
5,524,703	-		Psyr_4662	0.40	+2.2
5,524,703	-		Psyr_4662	0.40	-1.4
5,524,906	+		Psyr_4662	0.45	-3.0
5,524,907	-		Psyr_4662	0.45	-1.2
5,524,930	+		Psyr_4662	0.45	+1.8
5,524,930	+		Psyr_4662	0.45	-2.0
5,524,931	-		Psyr_4662	0.45	+1.0
5,524,978	+		Psyr_4662	0.47	+0.4
5,524,978	+		Psyr_4662	0.47	-2.8
5,524,978	+		Psyr_4662	0.47	-1.4
5,524,978	+		Psyr_4662	0.47	-1.3
5,524,978	+		Psyr_4662	0.47	-2.4
5,524,978	+		Psyr_4662	0.47	-0.8
5,524,978	+		Psyr_4662	0.47	-0.8
5,524,979	-		Psyr_4662	0.47	+0.8
5,524,979	-		Psyr_4662	0.47	+0.8
5,524,979	-		Psyr_4662	0.47	-0.8
5,524,979	-		Psyr_4662	0.47	-1.5
5,524,979	-		Psyr_4662	0.47	-0.1
5,524,979	-		Psyr_4662	0.47	+0.8
5,524,999	+		Psyr_4662	0.47	+1.9
5,525,146	+		Psyr_4662	0.51	-2.4
5,525,146	+		Psyr_4662	0.51	-1.2
5,525,147	-		Psyr_4662	0.51	+0.6
5,525,147	-		Psyr_4662	0.51	+0.3
5,525,150	+		Psyr_4662	0.51	+2.1
5,525,150	+		Psyr_4662	0.51	-0.2
5,525,150	+		Psyr_4662	0.51	-0.8
5,525,151	-		Psyr_4662	0.51	+0.1
5,525,151	-		Psyr_4662	0.51	-0.2
5,525,332	+		Psyr_4662	0.55	+0.9
5,525,332	+		Psyr_4662	0.55	+0.7
5,525,333	-		Psyr_4662	0.55	+1.2
5,525,644	+		Psyr_4662	0.63	-0.8
5,525,644	+		Psyr_4662	0.63	-0.3
5,525,644	+		Psyr_4662	0.63	+0.2
5,525,644	+		Psyr_4662	0.63	+1.1
5,525,644	+		Psyr_4662	0.63	+4.9
5,525,644	+		Psyr_4662	0.63	+0.5
5,525,645	-		Psyr_4662	0.63	+3.0
5,525,645	-		Psyr_4662	0.63	-0.8
5,525,722	+		Psyr_4662	0.65	-0.6
5,525,722	+		Psyr_4662	0.65	+1.8
5,525,722	+		Psyr_4662	0.65	-1.6
5,525,723	-		Psyr_4662	0.65	-1.8
5,526,020	+		Psyr_4662	0.72	-1.4
5,526,199	+		Psyr_4662	0.77	-2.3
5,526,199	+		Psyr_4662	0.77	+2.5
5,526,200	-		Psyr_4662	0.77	+0.8
5,526,318	+		Psyr_4662	0.80	+1.2
5,526,319	-		Psyr_4662	0.80	+0.0
5,526,433	+		Psyr_4662	0.83	-0.9
5,526,433	+		Psyr_4662	0.83	-2.6
5,526,434	-		Psyr_4662	0.83	-1.8
5,526,601	+		Psyr_4662	0.87	+1.1
5,526,601	+		Psyr_4662	0.87	-0.8
5,526,601	+		Psyr_4662	0.87	-1.4
5,526,601	+		Psyr_4662	0.87	+2.0
5,526,601	+		Psyr_4662	0.87	-2.2
5,526,601	+		Psyr_4662	0.87	-1.5
5,526,601	+		Psyr_4662	0.87	-1.1
5,526,602	-		Psyr_4662	0.87	-1.8
5,526,602	-		Psyr_4662	0.87	-1.1
5,526,602	-		Psyr_4662	0.87	+0.2
5,526,602	-		Psyr_4662	0.87	-3.4
5,526,602	-		Psyr_4662	0.87	-1.0
5,526,602	-		Psyr_4662	0.87	+2.4
5,526,602	-		Psyr_4662	0.87	-1.6
5,526,602	-		Psyr_4662	0.87	+1.7
5,526,602	-		Psyr_4662	0.87	+0.0
5,526,610	+		Psyr_4662	0.87	-2.0
5,526,610	+		Psyr_4662	0.87	-0.9
5,526,611	-		Psyr_4662	0.87	-1.1
5,526,611	-		Psyr_4662	0.87	+0.3
5,526,611	-		Psyr_4662	0.87	+1.9
5,526,611	-		Psyr_4662	0.87	-2.3
5,526,611	-		Psyr_4662	0.87	-0.3
5,526,961	+				-1.1
5,527,070	+				+3.1
5,527,070	+				-1.0
5,527,078	+				+4.8
5,527,078	+				+0.9
5,527,078	+				-1.9
5,527,078	+				+2.6
5,527,079	-				+1.4
5,527,079	-				+0.5
5,527,079	-				-1.9
5,527,079	-				+0.7
5,527,111	-				-2.4
5,527,146	+				-1.2
5,527,146	+				-1.9
5,527,146	+				+0.3
5,527,147	-				+1.8
5,527,147	-				-2.2
5,527,147	-				+0.1
5,527,147	-				-0.8
5,527,149	+				+2.9
5,527,149	+				-0.3
5,527,149	+				+3.3
5,527,149	+				-1.3
5,527,149	+				-0.4
5,527,149	+				-2.4
5,527,149	+				+0.7
5,527,149	+				-1.5
5,527,150	-				+1.9
5,527,150	-				-2.2
5,527,150	-				-2.1
5,527,150	-				+0.7
5,527,150	-				-0.6
5,527,231	+				+1.4
5,527,232	-				+4.9
5,527,232	-				-0.3
5,527,242	+				+0.8
5,527,242	+				+4.0
5,527,242	+				-2.4
5,527,242	+				+0.8
5,527,242	+				-3.1
5,527,244	+				+3.9
5,527,244	+				+0.2
5,527,244	+				+0.9
5,527,244	+				-0.9
5,527,244	+				-1.6
5,527,244	+				-0.8
5,527,245	-				+1.6
5,527,245	-				+0.8
5,527,245	-				+0.9
5,527,245	-				-0.8
5,527,245	-				-0.9
5,527,245	-				+1.9
5,527,245	-				-2.4
5,527,245	-				+1.2
5,527,245	-				-1.4
5,527,258	+		Psyr_4663	0.13	-1.4
5,527,258	+		Psyr_4663	0.13	+0.5
5,527,259	-		Psyr_4663	0.13	-0.4
5,527,391	+		Psyr_4663	0.45	+2.2
5,527,392	-		Psyr_4663	0.46	+2.4
5,527,449	+		Psyr_4663	0.60	-1.4
5,527,449	+		Psyr_4663	0.60	+0.6
5,527,449	+		Psyr_4663	0.60	+2.0
5,527,449	+		Psyr_4663	0.60	-1.5
5,527,449	+		Psyr_4663	0.60	+0.2
5,527,449	+		Psyr_4663	0.60	+1.6
5,527,449	+		Psyr_4663	0.60	-1.0
5,527,449	+		Psyr_4663	0.60	+0.4
5,527,450	-		Psyr_4663	0.60	-2.7
5,527,450	-		Psyr_4663	0.60	+0.1
5,527,450	-		Psyr_4663	0.60	-1.6
5,527,450	-		Psyr_4663	0.60	-0.1
5,527,451	+		Psyr_4663	0.60	-1.3
5,527,452	-		Psyr_4663	0.60	+2.0
5,527,576	+				+0.2
5,527,576	+				+3.1
5,527,576	+				+2.2
5,527,576	+				+0.9
5,527,577	-				-2.2
5,527,577	-				-1.3
5,527,577	-				-0.6
5,527,620	+				+1.8
5,527,654	+				-0.4
5,527,678	+				+0.2
5,527,769	+				-1.4
5,527,770	-				-3.7
5,527,870	-		Psyr_4664	0.16	-1.7
5,527,968	+		Psyr_4664	0.25	-2.4
5,527,968	+		Psyr_4664	0.25	+0.1
5,527,968	+		Psyr_4664	0.25	-1.5
5,527,968	+		Psyr_4664	0.25	+0.8
5,527,969	-		Psyr_4664	0.25	-1.4
5,527,969	-		Psyr_4664	0.25	+3.2
5,527,969	-		Psyr_4664	0.25	-0.1
5,528,052	+		Psyr_4664	0.32	+0.3
5,528,052	+		Psyr_4664	0.32	-1.6
5,528,052	+		Psyr_4664	0.32	-0.2
5,528,052	+		Psyr_4664	0.32	+1.2
5,528,053	-		Psyr_4664	0.32	-0.3
5,528,136	+		Psyr_4664	0.39	-2.2
5,528,136	+		Psyr_4664	0.39	-0.5
5,528,136	+		Psyr_4664	0.39	-1.5
5,528,136	+		Psyr_4664	0.39	-1.9
5,528,136	+		Psyr_4664	0.39	+0.7
5,528,136	+		Psyr_4664	0.39	+1.2
5,528,136	+		Psyr_4664	0.39	-0.3
5,528,136	+		Psyr_4664	0.39	+0.5
5,528,136	+		Psyr_4664	0.39	+0.5
5,528,136	+		Psyr_4664	0.39	-1.5
5,528,136	+		Psyr_4664	0.39	-0.1
5,528,136	+		Psyr_4664	0.39	+1.8