Experiment: apoplastic, sonication recovery; Green bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4449 and Psyr_4450 are separated by 223 nucleotides Psyr_4450 and Psyr_4451 are separated by 236 nucleotides Psyr_4451 and Psyr_4452 overlap by 4 nucleotides
Psyr_4449: Psyr_4449 - AsmA, at 5,314,087 to 5,316,153
_4449
Psyr_4450: Psyr_4450 - transcriptional regulator, TetR family, at 5,316,377 to 5,317,009
_4450
Psyr_4451: Psyr_4451 - UreE urease accessory, N-terminal:UreE urease accessory, C-terminal, at 5,317,246 to 5,317,746
_4451
Psyr_4452: Psyr_4452 - Urease accessory protein UreF, at 5,317,743 to 5,318,417
_4452
Position (kb) 5316
5317
5318 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 5315.507 kb on + strand, within Psyr_4449 at 5315.508 kb on - strand, within Psyr_4449 at 5315.508 kb on - strand, within Psyr_4449 at 5315.802 kb on + strand, within Psyr_4449 at 5316.091 kb on + strand at 5316.092 kb on - strand at 5316.092 kb on - strand at 5316.092 kb on - strand at 5316.092 kb on - strand at 5316.093 kb on + strand at 5316.093 kb on + strand at 5316.093 kb on + strand at 5316.093 kb on + strand at 5316.093 kb on + strand at 5316.094 kb on - strand at 5316.094 kb on - strand at 5316.094 kb on - strand at 5316.094 kb on - strand at 5316.198 kb on + strand at 5316.209 kb on + strand at 5316.209 kb on + strand at 5316.209 kb on + strand at 5316.280 kb on + strand at 5316.280 kb on + strand at 5316.280 kb on + strand at 5316.281 kb on - strand at 5316.281 kb on - strand at 5316.283 kb on + strand at 5316.283 kb on + strand at 5316.325 kb on - strand at 5316.325 kb on - strand at 5316.339 kb on - strand at 5316.339 kb on - strand at 5316.356 kb on - strand at 5316.356 kb on - strand at 5316.356 kb on - strand at 5316.657 kb on + strand, within Psyr_4450 at 5316.657 kb on + strand, within Psyr_4450 at 5316.657 kb on + strand, within Psyr_4450 at 5316.658 kb on - strand, within Psyr_4450 at 5316.658 kb on - strand, within Psyr_4450 at 5316.658 kb on - strand, within Psyr_4450 at 5316.658 kb on - strand, within Psyr_4450 at 5316.716 kb on + strand, within Psyr_4450 at 5316.717 kb on - strand, within Psyr_4450 at 5317.024 kb on + strand at 5317.025 kb on - strand at 5317.055 kb on - strand at 5317.063 kb on + strand at 5317.064 kb on - strand at 5317.092 kb on + strand at 5317.093 kb on - strand at 5317.119 kb on - strand at 5317.119 kb on - strand at 5317.179 kb on - strand at 5317.240 kb on + strand at 5317.240 kb on + strand at 5317.240 kb on + strand at 5317.240 kb on + strand at 5317.240 kb on + strand at 5317.241 kb on - strand at 5317.241 kb on - strand at 5317.241 kb on - strand at 5317.241 kb on - strand at 5317.514 kb on - strand, within Psyr_4451 at 5317.579 kb on + strand, within Psyr_4451 at 5317.579 kb on + strand, within Psyr_4451 at 5317.579 kb on + strand, within Psyr_4451 at 5317.579 kb on + strand, within Psyr_4451 at 5317.580 kb on - strand, within Psyr_4451 at 5317.580 kb on - strand, within Psyr_4451 at 5317.709 kb on - strand at 5317.800 kb on + strand at 5317.807 kb on - strand at 5317.807 kb on - strand at 5317.807 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction apoplastic, sonication recovery; Green bean remove 5,315,507 + Psyr_4449 0.69 +1.1 5,315,508 - Psyr_4449 0.69 +0.6 5,315,508 - Psyr_4449 0.69 -3.0 5,315,802 + Psyr_4449 0.83 +0.6 5,316,091 + -0.8 5,316,092 - -0.3 5,316,092 - -1.8 5,316,092 - +2.2 5,316,092 - +2.5 5,316,093 + +2.4 5,316,093 + +0.6 5,316,093 + -1.6 5,316,093 + -2.9 5,316,093 + -1.3 5,316,094 - -0.6 5,316,094 - +0.9 5,316,094 - +1.7 5,316,094 - -1.5 5,316,198 + +0.1 5,316,209 + -0.9 5,316,209 + -0.3 5,316,209 + -1.9 5,316,280 + -0.5 5,316,280 + +1.4 5,316,280 + -0.5 5,316,281 - -1.8 5,316,281 - -2.5 5,316,283 + -2.3 5,316,283 + -2.1 5,316,325 - +0.0 5,316,325 - +0.8 5,316,339 - +0.1 5,316,339 - -0.0 5,316,356 - +1.6 5,316,356 - +1.0 5,316,356 - +2.0 5,316,657 + Psyr_4450 0.44 -2.9 5,316,657 + Psyr_4450 0.44 -1.3 5,316,657 + Psyr_4450 0.44 -0.6 5,316,658 - Psyr_4450 0.44 -2.8 5,316,658 - Psyr_4450 0.44 -1.6 5,316,658 - Psyr_4450 0.44 -0.3 5,316,658 - Psyr_4450 0.44 -0.9 5,316,716 + Psyr_4450 0.54 +0.6 5,316,717 - Psyr_4450 0.54 -1.9 5,317,024 + -0.5 5,317,025 - -0.3 5,317,055 - +1.7 5,317,063 + -2.2 5,317,064 - +0.6 5,317,092 + +0.7 5,317,093 - -0.6 5,317,119 - +0.5 5,317,119 - +1.5 5,317,179 - +0.5 5,317,240 + -1.6 5,317,240 + +0.4 5,317,240 + -1.3 5,317,240 + +0.9 5,317,240 + -2.2 5,317,241 - +0.4 5,317,241 - +0.6 5,317,241 - -2.5 5,317,241 - +0.2 5,317,514 - Psyr_4451 0.53 -1.7 5,317,579 + Psyr_4451 0.66 -2.1 5,317,579 + Psyr_4451 0.66 -1.6 5,317,579 + Psyr_4451 0.66 +0.4 5,317,579 + Psyr_4451 0.66 -1.5 5,317,580 - Psyr_4451 0.67 -0.6 5,317,580 - Psyr_4451 0.67 +4.5 5,317,709 - -2.4 5,317,800 + -4.0 5,317,807 - +1.9 5,317,807 - -3.1 5,317,807 - +0.4
Or see this region's nucleotide sequence