Experiment: apoplastic, sonication recovery; Green bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4401 and Psyr_4402 are separated by 137 nucleotides Psyr_4402 and Psyr_4403 are separated by 24 nucleotides
Psyr_4401: Psyr_4401 - acetyl-CoA carboxylase carboxyltransferase subunit alpha / biotin carboxylase, at 5,262,284 to 5,263,627
_4401
Psyr_4402: Psyr_4402 - [LSU ribosomal protein L11P]-lysine N-methyltransferase, at 5,263,765 to 5,264,643
_4402
Psyr_4403: Psyr_4403 - conserved hypothetical protein, at 5,264,668 to 5,265,990
_4403
Position (kb) 5263
5264
5265 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5263.687 kb on - strand at 5263.687 kb on - strand at 5263.692 kb on + strand at 5263.692 kb on + strand at 5263.692 kb on + strand at 5263.692 kb on + strand at 5263.726 kb on + strand at 5263.726 kb on + strand at 5263.726 kb on + strand at 5263.727 kb on - strand at 5263.727 kb on - strand at 5263.727 kb on - strand at 5263.727 kb on - strand at 5263.729 kb on + strand at 5263.739 kb on + strand at 5263.739 kb on + strand at 5263.739 kb on + strand at 5263.739 kb on + strand at 5263.740 kb on - strand at 5263.740 kb on - strand at 5263.740 kb on - strand at 5263.740 kb on - strand at 5263.740 kb on - strand at 5263.740 kb on - strand at 5263.740 kb on - strand at 5263.740 kb on - strand at 5263.756 kb on + strand at 5263.756 kb on + strand at 5263.756 kb on + strand at 5263.816 kb on + strand at 5263.817 kb on - strand at 5264.333 kb on + strand, within Psyr_4402 at 5264.333 kb on + strand, within Psyr_4402 at 5264.333 kb on + strand, within Psyr_4402 at 5264.333 kb on + strand, within Psyr_4402 at 5264.333 kb on + strand, within Psyr_4402 at 5264.334 kb on - strand, within Psyr_4402 at 5264.401 kb on + strand, within Psyr_4402 at 5264.401 kb on + strand, within Psyr_4402 at 5264.402 kb on - strand, within Psyr_4402 at 5264.402 kb on - strand, within Psyr_4402 at 5264.570 kb on - strand at 5265.144 kb on + strand, within Psyr_4403 at 5265.480 kb on - strand, within Psyr_4403 at 5265.545 kb on + strand, within Psyr_4403 at 5265.546 kb on - strand at 5265.546 kb on - strand, within Psyr_4403 at 5265.574 kb on + strand, within Psyr_4403 at 5265.574 kb on + strand, within Psyr_4403 at 5265.574 kb on + strand, within Psyr_4403 at 5265.574 kb on + strand, within Psyr_4403 at 5265.575 kb on - strand, within Psyr_4403 at 5265.575 kb on - strand, within Psyr_4403 at 5265.575 kb on - strand, within Psyr_4403 at 5265.575 kb on - strand, within Psyr_4403
Per-strain Table
Position Strand Gene LocusTag Fraction apoplastic, sonication recovery; Green bean remove 5,263,687 - -2.0 5,263,687 - -1.7 5,263,692 + -2.7 5,263,692 + -0.9 5,263,692 + +1.0 5,263,692 + -0.5 5,263,726 + -2.7 5,263,726 + +0.7 5,263,726 + -0.9 5,263,727 - +0.1 5,263,727 - -1.1 5,263,727 - +1.1 5,263,727 - -2.8 5,263,729 + -2.0 5,263,739 + -2.1 5,263,739 + -0.1 5,263,739 + +1.6 5,263,739 + +0.6 5,263,740 - -1.7 5,263,740 - -1.1 5,263,740 - -0.7 5,263,740 - +3.5 5,263,740 - -1.0 5,263,740 - -1.3 5,263,740 - +1.7 5,263,740 - +1.7 5,263,756 + -1.6 5,263,756 + +2.1 5,263,756 + -0.5 5,263,816 + +3.4 5,263,817 - +3.7 5,264,333 + Psyr_4402 0.65 -2.0 5,264,333 + Psyr_4402 0.65 -2.2 5,264,333 + Psyr_4402 0.65 -1.7 5,264,333 + Psyr_4402 0.65 -1.2 5,264,333 + Psyr_4402 0.65 +1.4 5,264,334 - Psyr_4402 0.65 +0.5 5,264,401 + Psyr_4402 0.72 -1.5 5,264,401 + Psyr_4402 0.72 -1.9 5,264,402 - Psyr_4402 0.72 -2.0 5,264,402 - Psyr_4402 0.72 +0.9 5,264,570 - -1.7 5,265,144 + Psyr_4403 0.36 -1.1 5,265,480 - Psyr_4403 0.61 -1.3 5,265,545 + Psyr_4403 0.66 -1.5 5,265,546 - -0.3 5,265,546 - Psyr_4403 0.66 -1.7 5,265,574 + Psyr_4403 0.68 -0.7 5,265,574 + Psyr_4403 0.68 -1.7 5,265,574 + Psyr_4403 0.68 -2.1 5,265,574 + Psyr_4403 0.68 -2.0 5,265,575 - Psyr_4403 0.69 +3.1 5,265,575 - Psyr_4403 0.69 +0.7 5,265,575 - Psyr_4403 0.69 -2.1 5,265,575 - Psyr_4403 0.69 -0.6
Or see this region's nucleotide sequence