Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4321

Experiment: apoplastic, sonication recovery; Green bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	apoplastic, sonication recovery; Green bean
5,172,584	+		Psyr_4320	0.67	-2.1
5,172,584	+		Psyr_4320	0.67	-2.5
5,172,585	-		Psyr_4320	0.67	-0.6
5,173,299	+				-2.0
5,173,300	-				+2.0
5,173,319	+				+0.2
5,173,320	-				+3.9
5,173,404	+				-2.4
5,173,405	-				+2.4
5,173,405	-				+0.1
5,173,405	-				-0.1
5,173,449	+				+0.4
5,173,449	+				-1.5
5,173,449	+				+1.3
5,173,450	-				+1.3
5,173,450	-				-1.3
5,173,450	-				+2.3
5,173,450	-				-1.6
5,173,450	-				-1.2
5,173,450	-				+1.6
5,173,482	+				-1.5
5,173,498	+				+0.6
5,173,551	+				-0.9
5,173,552	-				-0.3
5,173,552	-				+1.6
5,173,563	+				-1.5
5,173,569	+				+0.2
5,173,569	+				+1.5
5,173,569	+				-0.7
5,173,569	+				-1.9
5,173,570	-				+0.9
5,173,570	-				-0.4
5,173,570	-				-2.4
5,173,570	-				+1.1
5,173,570	-				+2.2
5,173,570	-				-1.3
5,173,570	-				-2.9
5,173,573	+				-0.3
5,173,573	+				-0.4
5,173,573	+				+0.9
5,173,573	+				-2.8
5,173,574	-				+1.2
5,173,574	-				+0.4
5,173,574	-				-0.1
5,173,583	+				+0.0
5,173,594	+				+0.3
5,173,594	+				-1.9
5,173,594	+				-1.5
5,173,595	-				+0.3
5,173,595	-				+0.5
5,173,595	-				+0.9
5,173,595	-				+4.1
5,173,595	-				+1.7
5,173,595	-				+0.7
5,173,612	+				+1.4
5,173,613	-				+3.8
5,173,671	-				-1.3
5,173,737	+		Psyr_4321	0.17	+1.3
5,173,751	+		Psyr_4321	0.19	-2.0
5,173,751	+		Psyr_4321	0.19	-1.6
5,173,751	+		Psyr_4321	0.19	+4.3
5,173,751	+		Psyr_4321	0.19	+0.9
5,173,751	+		Psyr_4321	0.19	-1.0
5,173,751	+		Psyr_4321	0.19	+1.0
5,173,751	+		Psyr_4321	0.19	+1.1
5,173,752	-		Psyr_4321	0.19	-3.1
5,173,752	-		Psyr_4321	0.19	+0.3
5,173,752	-		Psyr_4321	0.19	+0.1
5,173,752	-		Psyr_4321	0.19	+0.2
5,173,752	-		Psyr_4321	0.19	+2.7
5,173,752	-		Psyr_4321	0.19	+1.9
5,173,752	-		Psyr_4321	0.19	-0.5
5,173,796	+		Psyr_4321	0.24	-1.0
5,173,797	-		Psyr_4321	0.24	-2.2
5,173,807	+		Psyr_4321	0.25	-1.5
5,173,808	-		Psyr_4321	0.25	-3.0
5,173,920	+		Psyr_4321	0.37	-1.9
5,173,920	+		Psyr_4321	0.37	+0.3
5,173,920	+		Psyr_4321	0.37	-1.2
5,173,920	+		Psyr_4321	0.37	-1.8
5,173,920	+		Psyr_4321	0.37	+0.9
5,173,921	-		Psyr_4321	0.38	+0.8
5,173,921	-		Psyr_4321	0.38	+1.2
5,173,921	-		Psyr_4321	0.38	+2.0
5,173,921	-		Psyr_4321	0.38	-0.2
5,173,921	-		Psyr_4321	0.38	+0.9
5,173,921	-		Psyr_4321	0.38	-0.1
5,173,921	-		Psyr_4321	0.38	-1.8
5,173,921	-		Psyr_4321	0.38	+0.4
5,173,921	-		Psyr_4321	0.38	-3.1
5,173,921	-		Psyr_4321	0.38	-2.1
5,173,924	+		Psyr_4321	0.38	-0.3
5,173,924	+		Psyr_4321	0.38	-0.4
5,173,924	+		Psyr_4321	0.38	-1.5
5,173,924	+		Psyr_4321	0.38	+2.5
5,173,924	+		Psyr_4321	0.38	-2.0
5,173,925	-		Psyr_4321	0.38	-1.9
5,173,925	-		Psyr_4321	0.38	+0.7
5,173,925	-		Psyr_4321	0.38	-0.8
5,173,925	-		Psyr_4321	0.38	+0.1
5,173,925	-		Psyr_4321	0.38	+0.7
5,173,925	-		Psyr_4321	0.38	-1.2
5,173,925	-		Psyr_4321	0.38	+0.1
5,173,925	-		Psyr_4321	0.38	+0.6
5,173,956	+		Psyr_4321	0.41	+0.5
5,173,956	+		Psyr_4321	0.41	-2.9
5,173,957	-		Psyr_4321	0.42	-1.6
5,173,959	+		Psyr_4321	0.42	-0.2
5,173,993	+		Psyr_4321	0.46	+1.9
5,173,993	+		Psyr_4321	0.46	-1.8
5,173,996	-		Psyr_4321	0.46	-0.9
5,174,029	+		Psyr_4321	0.50	+2.9
5,174,067	-		Psyr_4321	0.54	+1.2
5,174,091	+		Psyr_4321	0.56	-1.3
5,174,104	-		Psyr_4321	0.58	+1.0
5,174,105	+		Psyr_4321	0.58	-1.5
5,174,106	-		Psyr_4321	0.58	-1.1
5,174,109	-		Psyr_4321	0.58	+0.7
5,174,187	+		Psyr_4321	0.67	+2.4
5,174,188	-		Psyr_4321	0.67	-2.3
5,174,244	+		Psyr_4321	0.73	+2.2
5,174,277	+		Psyr_4321	0.77	+1.7
5,174,278	-		Psyr_4321	0.77	-2.2
5,174,300	-		Psyr_4321	0.80	+2.0
5,174,300	-		Psyr_4321	0.80	+0.2
5,174,338	+				-0.3
5,174,339	-		Psyr_4321	0.84	-0.6
5,174,339	-		Psyr_4321	0.84	-1.7
5,174,343	+		Psyr_4321	0.84	-1.5
5,174,343	+		Psyr_4321	0.84	+1.4
5,174,344	-		Psyr_4321	0.84	+1.8
5,174,347	+		Psyr_4321	0.85	+0.9
5,174,347	+		Psyr_4321	0.85	-1.0
5,174,347	+		Psyr_4321	0.85	-1.0
5,174,348	-		Psyr_4321	0.85	+0.2
5,174,392	+		Psyr_4321	0.90	-3.3
5,174,393	-		Psyr_4321	0.90	-1.1
5,174,408	+				+0.9
5,174,540	+				+0.7
5,174,540	+				-1.3
5,174,541	-				+0.1
5,174,541	-				+1.1
5,174,541	-				-2.5
5,174,576	-				-0.2
5,174,598	-		Psyr_4322	0.11	-1.5
5,174,736	+		Psyr_4322	0.23	-0.2
5,174,736	+		Psyr_4322	0.23	-1.5
5,174,736	+		Psyr_4322	0.23	-1.1
5,174,736	+		Psyr_4322	0.23	-0.4
5,174,736	+		Psyr_4322	0.23	-1.1
5,174,736	+		Psyr_4322	0.23	+3.9
5,174,736	+		Psyr_4322	0.23	-0.3
5,174,736	+		Psyr_4322	0.23	-2.1
5,174,736	+		Psyr_4322	0.23	-2.1
5,174,736	+		Psyr_4322	0.23	+2.5
5,174,736	+		Psyr_4322	0.23	-1.6
5,174,736	+		Psyr_4322	0.23	-1.6
5,174,736	+		Psyr_4322	0.23	-1.3
5,174,736	+		Psyr_4322	0.23	-1.8
5,174,736	+		Psyr_4322	0.23	-1.1
5,174,736	+		Psyr_4322	0.23	-0.9
5,174,736	+		Psyr_4322	0.23	+0.1
5,174,736	+		Psyr_4322	0.23	-0.3
5,174,736	+		Psyr_4322	0.23	-3.6
5,174,736	+		Psyr_4322	0.23	+1.1
5,174,736	+		Psyr_4322	0.23	+1.1
5,174,737	-		Psyr_4322	0.23	-2.0
5,174,737	-		Psyr_4322	0.23	-2.6
5,174,737	-		Psyr_4322	0.23	+1.7
5,174,737	-		Psyr_4322	0.23	-0.8
5,174,737	-		Psyr_4322	0.23	-1.4
5,174,737	-		Psyr_4322	0.23	+3.3
5,174,737	-		Psyr_4322	0.23	-0.2
5,174,737	-		Psyr_4322	0.23	-1.5
5,174,737	-		Psyr_4322	0.23	+1.1
5,174,737	-		Psyr_4322	0.23	-2.3
5,174,737	-		Psyr_4322	0.23	+1.1
5,174,737	-		Psyr_4322	0.23	-2.2
5,174,737	-		Psyr_4322	0.23	-0.9
5,174,741	+		Psyr_4322	0.23	-0.3
5,174,741	+		Psyr_4322	0.23	+0.2
5,174,741	+		Psyr_4322	0.23	-1.1
5,174,741	+		Psyr_4322	0.23	-1.0
5,174,742	-		Psyr_4322	0.23	+1.8
5,174,742	-		Psyr_4322	0.23	+0.4
5,174,742	-		Psyr_4322	0.23	-1.6
5,174,810	+		Psyr_4322	0.29	-1.1
5,174,810	+		Psyr_4322	0.29	-1.8
5,174,811	-		Psyr_4322	0.29	+1.0
5,174,867	+		Psyr_4322	0.33	+0.7
5,174,868	-		Psyr_4322	0.33	-1.9
5,174,879	-		Psyr_4322	0.34	-0.9
5,175,021	-		Psyr_4322	0.46	+0.6
5,175,021	-		Psyr_4322	0.46	-2.7
5,175,037	+		Psyr_4322	0.47	+1.1
5,175,037	+		Psyr_4322	0.47	+1.1
5,175,037	+		Psyr_4322	0.47	+2.9
5,175,037	+		Psyr_4322	0.47	-0.8
5,175,038	-		Psyr_4322	0.47	+1.0
5,175,038	-		Psyr_4322	0.47	-2.3
5,175,101	+		Psyr_4322	0.53	-0.9
5,175,102	-		Psyr_4322	0.53	-0.3
5,175,102	-		Psyr_4322	0.53	+1.3
5,175,102	-		Psyr_4322	0.53	-2.3
5,175,150	-		Psyr_4322	0.57	-0.3
5,175,150	-		Psyr_4322	0.57	-1.0
5,175,150	-		Psyr_4322	0.57	+1.6
5,175,152	+		Psyr_4322	0.57	-1.5
5,175,152	+		Psyr_4322	0.57	+2.1
5,175,152	+		Psyr_4322	0.57	+0.5
5,175,153	-		Psyr_4322	0.57	-2.2
5,175,153	-		Psyr_4322	0.57	-1.5
5,175,153	-		Psyr_4322	0.57	+0.2
5,175,153	-		Psyr_4322	0.57	-1.2
5,175,191	+		Psyr_4322	0.60	+1.7
5,175,192	-		Psyr_4322	0.60	-0.9
5,175,198	+		Psyr_4322	0.61	+2.3
5,175,266	+		Psyr_4322	0.66	-3.5
5,175,350	-		Psyr_4322	0.73	-1.3
5,175,351	+		Psyr_4322	0.73	-3.3
5,175,351	+		Psyr_4322	0.73	-1.3
5,175,351	+		Psyr_4322	0.73	-0.2
5,175,351	+		Psyr_4322	0.73	+1.1
5,175,352	-		Psyr_4322	0.73	-0.5
5,175,352	-		Psyr_4322	0.73	+0.6
5,175,352	-		Psyr_4322	0.73	+1.4
5,175,352	-		Psyr_4322	0.73	+1.9
5,175,352	-		Psyr_4322	0.73	-3.0
5,175,352	-		Psyr_4322	0.73	-1.3
5,175,443	+		Psyr_4322	0.81	+0.5
5,175,443	+		Psyr_4322	0.81	-0.0
5,175,444	-		Psyr_4322	0.81	-2.6
5,175,444	-		Psyr_4322	0.81	-2.0