Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3768

Experiment: apoplastic, sonication recovery; Green bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	apoplastic, sonication recovery; Green bean
4,484,572	+		Psyr_3766	0.89	+2.5
4,484,572	+		Psyr_3766	0.89	-1.5
4,484,573	-		Psyr_3766	0.89	+0.6
4,484,575	+		Psyr_3766	0.90	-0.4
4,484,576	-		Psyr_3766	0.90	+2.3
4,484,576	-		Psyr_3766	0.90	+0.5
4,484,761	+				+1.5
4,484,762	-				+2.9
4,484,812	+				+1.2
4,484,834	+				+3.1
4,484,834	+				+2.3
4,484,834	+				-1.2
4,484,834	+				-0.5
4,484,834	+				+0.7
4,484,834	+				+0.7
4,484,834	+				+1.0
4,484,834	+				-3.3
4,484,834	+				+0.2
4,484,834	+				+1.5
4,484,834	+				-1.2
4,484,834	+				-0.8
4,484,834	+				-0.5
4,484,834	+				+1.6
4,484,834	+				+2.9
4,484,835	-				-2.4
4,484,835	-				+0.2
4,484,835	-				+2.1
4,484,835	-				-1.4
4,484,835	-				+1.1
4,484,835	-				-0.9
4,484,835	-				-1.2
4,484,835	-				-0.4
4,484,835	-				+2.8
4,484,835	-				-0.5
4,484,835	-				+1.0
4,484,838	+				+4.5
4,484,838	+				+2.8
4,484,838	+				+2.2
4,484,838	+				-1.2
4,484,838	+				-0.5
4,484,838	+				-0.9
4,484,838	+				-0.4
4,484,839	-				+0.6
4,484,839	-				+1.0
4,484,839	-				+1.6
4,484,839	-				-0.1
4,484,839	-				+0.2
4,484,839	-				-1.0
4,484,839	-				-2.2
4,484,839	-				+1.6
4,484,839	-				+3.0
4,484,872	-		Psyr_3767	0.14	+0.0
4,484,872	-		Psyr_3767	0.14	+1.6
4,484,903	-		Psyr_3767	0.26	+0.2
4,484,903	-		Psyr_3767	0.26	-0.5
4,484,903	-		Psyr_3767	0.26	+0.3
4,484,908	+		Psyr_3767	0.28	+1.4
4,484,909	-		Psyr_3767	0.28	-2.0
4,484,941	+		Psyr_3767	0.40	-0.3
4,484,941	+		Psyr_3767	0.40	+0.5
4,484,942	-		Psyr_3767	0.40	+4.3
4,484,987	+		Psyr_3767	0.57	-1.5
4,485,027	+		Psyr_3767	0.72	-1.5
4,485,027	+		Psyr_3767	0.72	+2.8
4,485,028	-		Psyr_3767	0.72	-0.4
4,485,028	-		Psyr_3767	0.72	-0.0
4,485,028	-		Psyr_3767	0.72	+0.9
4,485,084	+				+0.0
4,485,085	-				-0.1
4,485,085	-				+0.7
4,485,124	+				-1.2
4,485,137	-				+2.4
4,485,316	+				+1.9
4,485,317	-				+3.2
4,485,317	-				-1.2
4,485,317	-				-0.7
4,485,320	+				+0.9
4,485,387	+				-1.4
4,485,388	-				-2.3
4,485,388	-				-1.5
4,485,388	-				+3.0
4,485,444	+				+0.9
4,485,619	-				-2.0
4,485,661	+				+2.8
4,485,661	+				-1.4
4,485,661	+				-2.5
4,485,661	+				+1.3
4,485,662	-				-1.7
4,485,662	-				-0.7
4,485,662	-				+3.4
4,485,662	-				-2.8
4,485,680	+				+0.9
4,485,681	-				+1.6
4,485,736	+		Psyr_3768	0.13	+0.0
4,485,748	+		Psyr_3768	0.14	-2.5
4,485,748	+		Psyr_3768	0.14	-1.5
4,485,748	+		Psyr_3768	0.14	+1.0
4,485,748	+		Psyr_3768	0.14	+0.5
4,485,749	-		Psyr_3768	0.14	-2.1
4,485,749	-		Psyr_3768	0.14	-2.8
4,485,749	-		Psyr_3768	0.14	+1.2
4,485,749	-		Psyr_3768	0.14	-0.7
4,485,749	-		Psyr_3768	0.14	-1.7
4,485,749	-		Psyr_3768	0.14	+1.0
4,485,749	-		Psyr_3768	0.14	-1.7
4,485,749	-		Psyr_3768	0.14	-2.6
4,485,749	-		Psyr_3768	0.14	-0.6
4,485,749	-		Psyr_3768	0.14	-0.5
4,485,749	-		Psyr_3768	0.14	+2.5
4,485,850	+		Psyr_3768	0.22	+0.5
4,485,893	-		Psyr_3768	0.25	-0.7
4,485,893	-		Psyr_3768	0.25	+0.3
4,485,893	-		Psyr_3768	0.25	+2.4
4,485,928	+		Psyr_3768	0.28	-2.0
4,485,928	+		Psyr_3768	0.28	+0.6
4,485,928	+		Psyr_3768	0.28	+0.0
4,485,928	+		Psyr_3768	0.28	-0.7
4,485,929	-		Psyr_3768	0.28	+2.4
4,485,929	-		Psyr_3768	0.28	-0.4
4,485,929	-		Psyr_3768	0.28	-0.9
4,485,990	+		Psyr_3768	0.33	-1.4
4,485,990	+		Psyr_3768	0.33	-0.5
4,485,990	+		Psyr_3768	0.33	+3.0
4,485,990	+		Psyr_3768	0.33	+3.1
4,485,990	+		Psyr_3768	0.33	-1.4
4,485,990	+		Psyr_3768	0.33	+0.8
4,485,990	+		Psyr_3768	0.33	+2.0
4,485,990	+		Psyr_3768	0.33	+0.0
4,485,990	+		Psyr_3768	0.33	+2.5
4,485,990	+		Psyr_3768	0.33	-1.7
4,485,990	+		Psyr_3768	0.33	+1.5
4,485,990	+		Psyr_3768	0.33	+0.6
4,485,990	+		Psyr_3768	0.33	-1.7
4,485,990	+		Psyr_3768	0.33	+2.2
4,485,990	+		Psyr_3768	0.33	-2.6
4,485,990	+		Psyr_3768	0.33	-1.8
4,485,990	+		Psyr_3768	0.33	+0.6
4,485,990	+		Psyr_3768	0.33	+0.2
4,485,990	+		Psyr_3768	0.33	-1.1
4,485,991	-		Psyr_3768	0.33	+2.1
4,485,991	-		Psyr_3768	0.33	+0.4
4,485,991	-		Psyr_3768	0.33	-0.7
4,485,991	-		Psyr_3768	0.33	-1.2
4,485,991	-		Psyr_3768	0.33	-2.7
4,485,991	-		Psyr_3768	0.33	-0.1
4,485,991	-		Psyr_3768	0.33	+0.4
4,485,991	-		Psyr_3768	0.33	+1.6
4,485,991	-		Psyr_3768	0.33	+2.0
4,485,991	-		Psyr_3768	0.33	+3.0
4,485,991	-		Psyr_3768	0.33	+1.6
4,485,991	-		Psyr_3768	0.33	-0.1
4,485,991	-		Psyr_3768	0.33	+0.4
4,485,991	-		Psyr_3768	0.33	-2.5
4,485,991	-		Psyr_3768	0.33	+1.9
4,485,991	-		Psyr_3768	0.33	-0.5
4,485,991	-		Psyr_3768	0.33	+1.4
4,485,991	-		Psyr_3768	0.33	+2.5
4,485,991	-		Psyr_3768	0.33	+3.4
4,485,991	-		Psyr_3768	0.33	-0.6
4,485,991	-		Psyr_3768	0.33	-0.1
4,485,991	-		Psyr_3768	0.33	+1.2
4,485,991	-		Psyr_3768	0.33	+4.2
4,485,991	-		Psyr_3768	0.33	+0.2
4,486,047	-		Psyr_3768	0.37	-0.2
4,486,089	+		Psyr_3768	0.40	-1.9
4,486,270	-		Psyr_3768	0.54	+1.6
4,486,292	+		Psyr_3768	0.56	+0.0
4,486,292	+		Psyr_3768	0.56	-0.7
4,486,293	-		Psyr_3768	0.56	-2.3
4,486,396	-		Psyr_3768	0.63	+0.6
4,486,540	+		Psyr_3768	0.74	-2.5
4,486,541	-		Psyr_3768	0.74	+2.0
4,486,541	-		Psyr_3768	0.74	-0.8
4,486,644	+		Psyr_3768	0.82	-1.4
4,486,828	+				+2.6
4,486,828	+				-0.1
4,486,829	-				-1.4
4,486,829	-				-1.2
4,486,863	+				-1.6
4,486,863	+				+0.6
4,486,863	+				-0.4
4,486,863	+				+0.4
4,486,863	+				+0.0
4,486,863	+				-3.5
4,486,864	-				+1.9
4,486,864	-				+1.4
4,486,864	-				-1.7
4,486,864	-				+1.1
4,486,933	+				+2.8
4,486,933	+				+1.0
4,486,958	-				+0.2
4,486,996	+				-0.4
4,486,997	-				+1.2
4,486,997	-				+2.5
4,487,147	-				+3.1
4,487,215	-				-1.4
4,487,215	-				-0.4
4,487,229	+				+0.1
4,487,229	+				+1.1
4,487,229	+				+1.5
4,487,230	-				+0.2
4,487,230	-				-0.6
4,487,250	+				-0.2
4,487,347	-				-0.7
4,487,382	+		Psyr_3769	0.10	+0.6
4,487,382	+		Psyr_3769	0.10	-0.1
4,487,383	-		Psyr_3769	0.10	-1.0
4,487,397	+		Psyr_3769	0.11	+0.1
4,487,397	+		Psyr_3769	0.11	-0.1
4,487,443	-		Psyr_3769	0.13	+2.3
4,487,499	+		Psyr_3769	0.16	+1.7
4,487,555	+		Psyr_3769	0.18	-2.2
4,487,556	-		Psyr_3769	0.18	+1.8
4,487,631	+		Psyr_3769	0.22	+0.6
4,487,631	+		Psyr_3769	0.22	+0.1
4,487,631	+		Psyr_3769	0.22	+0.3
4,487,631	+		Psyr_3769	0.22	-2.0
4,487,631	+		Psyr_3769	0.22	-2.4
4,487,631	+		Psyr_3769	0.22	-0.1
4,487,631	+		Psyr_3769	0.22	-0.5
4,487,631	+		Psyr_3769	0.22	-2.0
4,487,631	+		Psyr_3769	0.22	+1.9
4,487,632	-		Psyr_3769	0.22	-0.7
4,487,632	-		Psyr_3769	0.22	+0.2
4,487,632	-		Psyr_3769	0.22	-2.0
4,487,632	-		Psyr_3769	0.22	+0.0
4,487,632	-		Psyr_3769	0.22	+3.2
4,487,632	-		Psyr_3769	0.22	-0.4
4,487,632	-		Psyr_3769	0.22	+0.8
4,487,641	+		Psyr_3769	0.22	-1.3
4,487,642	-		Psyr_3769	0.22	+2.7
4,487,642	-		Psyr_3769	0.22	+0.4
4,487,664	+		Psyr_3769	0.23	-0.0
4,487,724	+		Psyr_3769	0.26	+0.8
4,487,724	+		Psyr_3769	0.26	-1.4
4,487,725	-		Psyr_3769	0.26	-2.3
4,487,725	-		Psyr_3769	0.26	-3.0
4,487,725	-		Psyr_3769	0.26	-0.4
4,487,830	-		Psyr_3769	0.31	+0.2
4,487,830	-		Psyr_3769	0.31	+2.2
4,487,830	-		Psyr_3769	0.31	+1.8
4,487,838	+		Psyr_3769	0.31	-1.4
4,487,865	+		Psyr_3769	0.32	+0.6
4,487,866	-		Psyr_3769	0.33	-1.2
4,487,866	-		Psyr_3769	0.33	-2.3
4,487,866	-		Psyr_3769	0.33	-0.7
4,487,866	-		Psyr_3769	0.33	-1.5