Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3363

Experiment: apoplastic, sonication recovery; Green bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	apoplastic, sonication recovery; Green bean
4,020,427	+		Psyr_3362	0.53	+1.6
4,020,428	-		Psyr_3362	0.53	-0.2
4,020,428	-		Psyr_3362	0.53	+1.7
4,020,484	+		Psyr_3362	0.58	-1.0
4,020,484	+		Psyr_3362	0.58	-0.5
4,020,484	+		Psyr_3362	0.58	-0.7
4,020,484	+		Psyr_3362	0.58	+0.7
4,020,484	+		Psyr_3362	0.58	-0.6
4,020,484	+		Psyr_3362	0.58	+2.9
4,020,484	+		Psyr_3362	0.58	+1.8
4,020,485	-		Psyr_3362	0.59	-2.4
4,020,485	-		Psyr_3362	0.59	+0.3
4,020,485	-		Psyr_3362	0.59	+0.2
4,020,485	-		Psyr_3362	0.59	+0.1
4,020,485	-		Psyr_3362	0.59	-0.2
4,020,485	-		Psyr_3362	0.59	-0.1
4,020,485	-		Psyr_3362	0.59	-3.0
4,020,485	-		Psyr_3362	0.59	+3.5
4,020,485	-		Psyr_3362	0.59	-0.2
4,020,485	-		Psyr_3362	0.59	+0.2
4,020,486	+		Psyr_3362	0.59	-2.7
4,020,486	+		Psyr_3362	0.59	-2.5
4,020,487	-		Psyr_3362	0.59	-0.0
4,020,487	-		Psyr_3362	0.59	+0.1
4,020,665	+		Psyr_3362	0.75	+0.6
4,020,665	+		Psyr_3362	0.75	+0.6
4,020,665	+		Psyr_3362	0.75	-0.9
4,020,666	-		Psyr_3362	0.75	-1.4
4,020,802	+		Psyr_3362	0.87	+1.5
4,020,989	+				-0.4
4,020,989	+				-1.0
4,020,989	+				+4.3
4,020,989	+				+1.3
4,020,989	+				+1.3
4,020,992	-				-0.1
4,020,992	-				-0.4
4,020,992	-				+0.4
4,020,992	-				+0.2
4,021,283	-		Psyr_3363	0.17	+0.3
4,021,283	-		Psyr_3363	0.17	+2.5
4,021,367	+		Psyr_3363	0.23	+3.3
4,021,368	-		Psyr_3363	0.23	-1.4
4,021,437	+		Psyr_3363	0.28	+0.5
4,021,437	+		Psyr_3363	0.28	-0.4
4,021,437	+		Psyr_3363	0.28	-1.7
4,021,437	+		Psyr_3363	0.28	+5.8
4,021,437	+		Psyr_3363	0.28	-3.3
4,021,438	-		Psyr_3363	0.28	-0.7
4,021,438	-		Psyr_3363	0.28	+0.1
4,021,714	-		Psyr_3363	0.47	+2.0
4,021,936	+		Psyr_3363	0.62	-2.3
4,021,936	+		Psyr_3363	0.62	+2.1
4,021,937	-		Psyr_3363	0.62	-0.0
4,021,937	-		Psyr_3363	0.62	-2.7
4,022,226	+		Psyr_3363	0.82	+2.8
4,022,226	+		Psyr_3363	0.82	-2.0
4,022,242	+		Psyr_3363	0.83	-0.4
4,022,243	-		Psyr_3363	0.83	+1.7
4,022,366	-				-2.0
4,022,466	+				+0.2
4,022,466	+				-1.1
4,022,466	+				+0.0
4,022,466	+				+1.6
4,022,466	+				-1.8
4,022,466	+				+0.4
4,022,466	+				-2.3
4,022,467	-				-2.0
4,022,467	-				-0.3
4,022,467	-				-1.6
4,022,467	-				+0.0
4,022,467	-				+1.6
4,022,467	-				+0.6
4,022,489	-				+1.8
4,022,531	+				+3.2
4,022,531	+				-0.7
4,022,531	+				-4.0
4,022,532	-				+0.6
4,022,532	-				-0.8
4,022,621	+				+3.9
4,022,621	+				-0.6
4,022,808	+		Psyr_3364	0.16	+0.2
4,022,808	+		Psyr_3364	0.16	+0.0
4,022,808	+		Psyr_3364	0.16	-1.6
4,022,809	-		Psyr_3364	0.16	-0.5
4,022,809	-		Psyr_3364	0.16	+0.6
4,022,809	-		Psyr_3364	0.16	-2.2
4,022,815	-		Psyr_3364	0.16	-1.6
4,022,815	-		Psyr_3364	0.16	+0.9
4,022,961	+		Psyr_3364	0.29	+0.1
4,022,961	+		Psyr_3364	0.29	+1.3
4,022,961	+		Psyr_3364	0.29	+1.2
4,022,961	+		Psyr_3364	0.29	+0.9
4,022,961	+		Psyr_3364	0.29	-0.4
4,022,961	+		Psyr_3364	0.29	+0.9
4,022,961	+		Psyr_3364	0.29	-1.4
4,022,961	+		Psyr_3364	0.29	-1.4
4,022,961	+		Psyr_3364	0.29	-2.2
4,022,961	+		Psyr_3364	0.29	+1.8
4,022,961	+		Psyr_3364	0.29	-1.0
4,022,961	+		Psyr_3364	0.29	+2.4
4,022,961	+		Psyr_3364	0.29	+2.0
4,022,961	+		Psyr_3364	0.29	-1.1
4,022,961	+		Psyr_3364	0.29	+2.1
4,022,962	-		Psyr_3364	0.29	+2.1
4,022,962	-		Psyr_3364	0.29	-0.1
4,022,962	-		Psyr_3364	0.29	-1.2
4,022,962	-		Psyr_3364	0.29	-1.4
4,022,962	-		Psyr_3364	0.29	-1.0
4,022,962	-		Psyr_3364	0.29	+2.4
4,022,962	-		Psyr_3364	0.29	-2.0
4,022,962	-		Psyr_3364	0.29	+0.2
4,022,962	-		Psyr_3364	0.29	+0.5
4,022,962	-		Psyr_3364	0.29	-1.9
4,022,962	-		Psyr_3364	0.29	-1.4
4,022,962	-		Psyr_3364	0.29	-1.4
4,022,962	-		Psyr_3364	0.29	+2.9
4,022,962	-		Psyr_3364	0.29	-3.3
4,022,962	-		Psyr_3364	0.29	+0.6
4,022,962	-		Psyr_3364	0.29	+3.2
4,022,962	-		Psyr_3364	0.29	-1.4
4,022,962	-		Psyr_3364	0.29	+1.8
4,022,963	+		Psyr_3364	0.29	-1.7
4,022,964	-		Psyr_3364	0.29	-0.6
4,022,964	-		Psyr_3364	0.29	+0.0
4,022,964	-		Psyr_3364	0.29	+0.0
4,023,087	+		Psyr_3364	0.40	-2.7
4,023,111	+		Psyr_3364	0.42	+0.4
4,023,111	+		Psyr_3364	0.42	+0.0
4,023,112	-		Psyr_3364	0.42	-2.3
4,023,135	+		Psyr_3364	0.44	+2.4
4,023,135	+		Psyr_3364	0.44	+0.4
4,023,136	-		Psyr_3364	0.44	+3.5
4,023,242	+		Psyr_3364	0.53	+0.0
4,023,249	+		Psyr_3364	0.54	-0.4
4,023,249	+		Psyr_3364	0.54	-0.1
4,023,249	+		Psyr_3364	0.54	+1.7
4,023,249	+		Psyr_3364	0.54	-0.4
4,023,249	+		Psyr_3364	0.54	-1.0
4,023,249	+		Psyr_3364	0.54	-1.6
4,023,249	+		Psyr_3364	0.54	-2.5
4,023,249	+		Psyr_3364	0.54	-1.6
4,023,249	+		Psyr_3364	0.54	+0.5
4,023,249	+		Psyr_3364	0.54	-1.0
4,023,249	+		Psyr_3364	0.54	-1.7
4,023,249	+		Psyr_3364	0.54	-0.5
4,023,249	+		Psyr_3364	0.54	+1.6
4,023,249	+		Psyr_3364	0.54	-0.7
4,023,249	+		Psyr_3364	0.54	+1.0
4,023,249	+		Psyr_3364	0.54	+2.7
4,023,250	-		Psyr_3364	0.54	-0.7
4,023,250	-		Psyr_3364	0.54	+1.4
4,023,250	-		Psyr_3364	0.54	+2.6
4,023,250	-		Psyr_3364	0.54	+2.3
4,023,250	-		Psyr_3364	0.54	+3.5
4,023,250	-		Psyr_3364	0.54	+0.2
4,023,250	-		Psyr_3364	0.54	-0.4
4,023,250	-		Psyr_3364	0.54	+1.7
4,023,250	-		Psyr_3364	0.54	-0.9
4,023,250	-		Psyr_3364	0.54	+1.6
4,023,250	-		Psyr_3364	0.54	+1.3
4,023,250	-		Psyr_3364	0.54	+2.1
4,023,250	-		Psyr_3364	0.54	+0.9
4,023,250	-		Psyr_3364	0.54	-2.1
4,023,250	-		Psyr_3364	0.54	-2.0
4,023,250	-		Psyr_3364	0.54	-1.8
4,023,250	-		Psyr_3364	0.54	-2.0
4,023,250	-		Psyr_3364	0.54	-1.0
4,023,251	+		Psyr_3364	0.54	-0.3
4,023,251	+		Psyr_3364	0.54	-1.7
4,023,251	+		Psyr_3364	0.54	+0.5
4,023,252	-		Psyr_3364	0.54	-0.2
4,023,252	-		Psyr_3364	0.54	+1.3
4,023,259	+		Psyr_3364	0.54	+0.8
4,023,260	-		Psyr_3364	0.55	-0.2
4,023,283	-		Psyr_3364	0.57	-1.3
4,023,383	-		Psyr_3364	0.65	+0.2
4,023,462	+		Psyr_3364	0.72	-1.6