Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3071

Experiment: apoplastic, sonication recovery; Green bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	apoplastic, sonication recovery; Green bean
3,669,399	+		Psyr_3069	0.59	-1.6
3,669,399	+		Psyr_3069	0.59	+1.2
3,669,399	+		Psyr_3069	0.59	+0.7
3,669,399	+		Psyr_3069	0.59	-2.0
3,669,399	+		Psyr_3069	0.59	-0.3
3,669,399	+		Psyr_3069	0.59	-1.3
3,669,400	-		Psyr_3069	0.59	-0.8
3,669,400	-		Psyr_3069	0.59	+0.3
3,669,400	-		Psyr_3069	0.59	-0.8
3,669,400	-		Psyr_3069	0.59	-1.0
3,669,414	+		Psyr_3069	0.63	-1.3
3,669,414	+		Psyr_3069	0.63	+4.1
3,669,415	-		Psyr_3069	0.63	+0.4
3,669,415	-		Psyr_3069	0.63	-0.0
3,669,415	-		Psyr_3069	0.63	+1.4
3,669,415	-		Psyr_3069	0.63	-0.5
3,669,467	+		Psyr_3069	0.77	+1.1
3,669,473	+		Psyr_3069	0.78	-0.5
3,669,489	+		Psyr_3069	0.83	-1.4
3,669,490	-		Psyr_3069	0.83	+1.1
3,669,840	+		Psyr_3070	0.37	-1.0
3,669,840	+		Psyr_3070	0.37	+0.3
3,669,840	+		Psyr_3070	0.37	+0.3
3,669,904	+		Psyr_3070	0.46	+0.1
3,669,995	+		Psyr_3070	0.58	+0.8
3,670,059	+		Psyr_3070	0.67	+0.0
3,670,059	+		Psyr_3070	0.67	-0.9
3,670,060	-		Psyr_3070	0.67	+1.1
3,670,060	-		Psyr_3070	0.67	+1.2
3,670,060	-		Psyr_3070	0.67	-1.5
3,670,071	-		Psyr_3070	0.69	-0.5
3,670,072	+		Psyr_3070	0.69	+0.5
3,670,072	+		Psyr_3070	0.69	-2.5
3,670,072	+		Psyr_3070	0.69	+1.5
3,670,072	+		Psyr_3070	0.69	+0.8
3,670,072	+		Psyr_3070	0.69	-0.6
3,670,072	+		Psyr_3070	0.69	-0.0
3,670,072	+		Psyr_3070	0.69	+2.9
3,670,072	+		Psyr_3070	0.69	-1.9
3,670,072	+		Psyr_3070	0.69	-2.2
3,670,073	-		Psyr_3070	0.69	-1.3
3,670,073	-		Psyr_3070	0.69	+0.1
3,670,073	-		Psyr_3070	0.69	-2.1
3,670,073	-		Psyr_3070	0.69	-1.0
3,670,073	-		Psyr_3070	0.69	+0.7
3,670,073	-		Psyr_3070	0.69	-1.6
3,670,073	-		Psyr_3070	0.69	-1.3
3,670,073	-		Psyr_3070	0.69	+0.8
3,670,073	-		Psyr_3070	0.69	-0.8
3,670,073	-		Psyr_3070	0.69	-2.8
3,670,073	-		Psyr_3070	0.69	-0.0
3,670,073	-		Psyr_3070	0.69	+1.2
3,670,073	-		Psyr_3070	0.69	+1.2
3,670,073	-		Psyr_3070	0.69	+0.3
3,670,418	+		Psyr_3071	0.12	+1.0
3,670,418	+		Psyr_3071	0.12	-0.0
3,670,418	+		Psyr_3071	0.12	+0.5
3,670,419	-		Psyr_3071	0.12	+1.9
3,670,419	-		Psyr_3071	0.12	-0.6
3,670,419	-		Psyr_3071	0.12	+2.0
3,670,419	-		Psyr_3071	0.12	+1.8
3,670,589	+		Psyr_3071	0.26	+1.7
3,670,590	-		Psyr_3071	0.26	-1.8
3,670,836	+		Psyr_3071	0.47	+0.8
3,670,837	-		Psyr_3071	0.47	+1.0
3,670,837	-		Psyr_3071	0.47	+3.0
3,670,837	-		Psyr_3071	0.47	-3.6
3,670,906	-		Psyr_3071	0.53	-2.0
3,670,906	-		Psyr_3071	0.53	+1.1
3,671,029	-		Psyr_3071	0.63	+0.4
3,671,051	+		Psyr_3071	0.65	-1.5
3,671,125	+		Psyr_3071	0.71	-1.0
3,671,125	+		Psyr_3071	0.71	-2.6
3,671,126	-		Psyr_3071	0.71	+1.0
3,671,126	-		Psyr_3071	0.71	+0.2
3,671,126	-		Psyr_3071	0.71	-0.8
3,671,126	-		Psyr_3071	0.71	+1.5
3,671,178	-		Psyr_3071	0.75	-0.5
3,671,338	+		Psyr_3071	0.89	-1.6
3,671,338	+		Psyr_3071	0.89	-1.6
3,671,338	+		Psyr_3071	0.89	-1.9
3,671,338	+		Psyr_3071	0.89	-1.8
3,671,339	-		Psyr_3071	0.89	+0.9
3,671,339	-		Psyr_3071	0.89	-1.5
3,671,339	-		Psyr_3071	0.89	-0.0
3,671,339	-		Psyr_3071	0.89	-0.7
3,671,339	-		Psyr_3071	0.89	+2.3
3,671,339	-		Psyr_3071	0.89	+0.4
3,671,339	-		Psyr_3071	0.89	+0.4
3,671,339	-		Psyr_3071	0.89	+0.3
3,671,339	-		Psyr_3071	0.89	-2.8
3,671,339	-		Psyr_3071	0.89	-2.3
3,671,440	+				-1.4
3,671,440	+				-0.5
3,671,440	+				+0.1
3,671,440	+				-0.5
3,671,440	+				-1.1
3,671,440	+				-3.4
3,671,440	+				+0.3
3,671,441	-				+0.8
3,671,441	-				+2.0
3,671,441	-				+0.2
3,671,441	-				+0.2
3,671,441	-				-1.0
3,671,441	-				-0.3
3,671,441	-				+2.0
3,671,470	-				-1.1
3,671,470	-				-1.8
3,671,560	+				-0.7
3,671,560	+				-2.5
3,671,560	+				+0.1
3,671,560	+				+1.3
3,671,560	+				-0.7
3,671,560	+				+1.8
3,671,561	-				+0.3
3,671,561	-				-1.3
3,671,561	-				+2.6
3,671,561	-				+1.5
3,671,638	+		Psyr_3072	0.17	+4.3
3,671,638	+		Psyr_3072	0.17	+1.9
3,671,650	+		Psyr_3072	0.18	-1.8
3,671,650	+		Psyr_3072	0.18	-0.8
3,671,650	+		Psyr_3072	0.18	-1.0
3,671,650	+		Psyr_3072	0.18	+1.3
3,671,650	+		Psyr_3072	0.18	+0.1
3,671,650	+		Psyr_3072	0.18	+1.5
3,671,650	+		Psyr_3072	0.18	+0.8
3,671,650	+		Psyr_3072	0.18	-2.2
3,671,651	-		Psyr_3072	0.18	+2.3
3,671,651	-		Psyr_3072	0.18	+1.8
3,671,651	-		Psyr_3072	0.18	+3.0
3,671,651	-		Psyr_3072	0.18	-0.9
3,671,651	-		Psyr_3072	0.18	-1.6
3,671,651	-		Psyr_3072	0.18	-0.8
3,671,651	-		Psyr_3072	0.18	+0.4
3,671,667	-		Psyr_3072	0.20	+0.5
3,671,687	+		Psyr_3072	0.21	-0.9
3,671,690	+		Psyr_3072	0.22	+0.0
3,671,690	+		Psyr_3072	0.22	-0.1
3,671,792	+		Psyr_3072	0.32	-1.1
3,671,793	-				-0.5
3,671,832	+		Psyr_3072	0.36	-2.2
3,671,832	+		Psyr_3072	0.36	+1.6
3,671,832	+		Psyr_3072	0.36	-3.2
3,671,832	+		Psyr_3072	0.36	-2.3
3,671,832	+		Psyr_3072	0.36	-0.9
3,671,832	+		Psyr_3072	0.36	+1.4
3,671,832	+		Psyr_3072	0.36	-0.0
3,671,833	-		Psyr_3072	0.36	+0.5
3,671,833	-		Psyr_3072	0.36	+2.8
3,671,833	-		Psyr_3072	0.36	+2.5
3,671,833	-		Psyr_3072	0.36	+1.2
3,671,833	-		Psyr_3072	0.36	-1.5
3,671,848	+		Psyr_3072	0.37	-0.9
3,671,848	+		Psyr_3072	0.37	+1.6
3,671,849	-		Psyr_3072	0.37	+1.0
3,671,849	-		Psyr_3072	0.37	+0.5
3,671,849	-		Psyr_3072	0.37	+0.9
3,671,849	-		Psyr_3072	0.37	+2.5
3,671,865	+		Psyr_3072	0.39	-2.4
3,671,865	+		Psyr_3072	0.39	-0.6
3,671,866	-		Psyr_3072	0.39	-1.8
3,671,866	-		Psyr_3072	0.39	+1.8
3,671,866	-		Psyr_3072	0.39	+0.9
3,671,866	-		Psyr_3072	0.39	+3.7
3,671,868	-		Psyr_3072	0.39	-0.5
3,671,906	+		Psyr_3072	0.43	-1.5
3,671,967	+		Psyr_3072	0.49	+0.1
3,671,968	-		Psyr_3072	0.49	-2.2
3,671,968	-		Psyr_3072	0.49	-0.8
3,671,984	+		Psyr_3072	0.50	+0.4
3,671,985	-		Psyr_3072	0.50	+0.7
3,671,985	-		Psyr_3072	0.50	-1.0
3,671,985	-		Psyr_3072	0.50	-1.5
3,672,105	-		Psyr_3072	0.62	-1.5
3,672,306	+		Psyr_3072	0.82	+1.9