Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2686

Experiment: apoplastic, sonication recovery; Green bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	apoplastic, sonication recovery; Green bean
3,260,073	+		Psyr_2685	0.10	-0.1
3,260,073	+		Psyr_2685	0.10	-1.1
3,260,073	+		Psyr_2685	0.10	+1.6
3,260,073	+		Psyr_2685	0.10	+1.4
3,260,073	+		Psyr_2685	0.10	+1.1
3,260,073	+		Psyr_2685	0.10	+0.3
3,260,074	-		Psyr_2685	0.10	+2.2
3,260,074	-		Psyr_2685	0.10	-1.9
3,260,074	-		Psyr_2685	0.10	-0.6
3,260,076	-		Psyr_2685	0.11	-2.2
3,260,076	-		Psyr_2685	0.11	-1.2
3,260,076	-		Psyr_2685	0.11	-0.2
3,260,076	-		Psyr_2685	0.11	+0.4
3,260,076	-		Psyr_2685	0.11	+1.8
3,260,076	-		Psyr_2685	0.11	+0.5
3,260,113	+		Psyr_2685	0.14	-0.9
3,260,114	-		Psyr_2685	0.14	-1.2
3,260,122	+		Psyr_2685	0.15	-2.1
3,260,196	+		Psyr_2685	0.23	-2.3
3,260,196	+		Psyr_2685	0.23	+2.3
3,260,196	+		Psyr_2685	0.23	-0.8
3,260,196	+		Psyr_2685	0.23	+0.5
3,260,196	+		Psyr_2685	0.23	-2.1
3,260,196	+		Psyr_2685	0.23	-2.4
3,260,196	+		Psyr_2685	0.23	-2.2
3,260,196	+		Psyr_2685	0.23	+3.1
3,260,196	+		Psyr_2685	0.23	-1.6
3,260,196	+		Psyr_2685	0.23	-0.9
3,260,197	-		Psyr_2685	0.23	+0.8
3,260,197	-		Psyr_2685	0.23	-0.6
3,260,197	-		Psyr_2685	0.23	-1.9
3,260,197	-		Psyr_2685	0.23	+1.0
3,260,197	-		Psyr_2685	0.23	-0.9
3,260,197	-		Psyr_2685	0.23	+0.1
3,260,197	-		Psyr_2685	0.23	-3.0
3,260,197	-		Psyr_2685	0.23	-2.8
3,260,197	-		Psyr_2685	0.23	+1.6
3,260,199	-		Psyr_2685	0.23	-0.0
3,260,286	+		Psyr_2685	0.31	-0.9
3,260,395	+		Psyr_2685	0.42	-2.8
3,260,396	-		Psyr_2685	0.42	+1.8
3,260,396	-		Psyr_2685	0.42	-1.3
3,260,396	-		Psyr_2685	0.42	+1.8
3,260,442	+		Psyr_2685	0.47	-2.6
3,260,443	-		Psyr_2685	0.47	-1.4
3,260,443	-		Psyr_2685	0.47	+1.2
3,260,443	-		Psyr_2685	0.47	-2.5
3,260,449	-		Psyr_2685	0.48	+0.8
3,260,449	-		Psyr_2685	0.48	-1.8
3,260,466	+		Psyr_2685	0.49	+0.7
3,260,466	+		Psyr_2685	0.49	+0.0
3,260,658	-		Psyr_2685	0.68	+3.4
3,260,977	-				-0.9
3,261,023	+				-1.2
3,261,023	+				-0.7
3,261,023	+				+2.1
3,261,023	+				+0.5
3,261,023	+				-3.1
3,261,023	+				+0.5
3,261,024	-				+1.5
3,261,024	-				-0.9
3,261,024	-				+0.6
3,261,024	-				+1.4
3,261,024	-				-1.0
3,261,024	-				+1.2
3,261,069	+				+2.1
3,261,069	+				+2.2
3,261,069	+				+0.7
3,261,069	+				-0.5
3,261,069	+				+0.4
3,261,069	+				+1.0
3,261,070	-				-0.4
3,261,070	-				-0.2
3,261,070	-				-2.3
3,261,070	-				-1.4
3,261,070	-				-1.2
3,261,070	-				+0.7
3,261,070	-				-2.8
3,261,072	+				+0.8
3,261,072	+				-0.7
3,261,072	+				-2.3
3,261,072	+				-2.9
3,261,073	-				+0.4
3,261,073	-				+1.7
3,261,073	-				+0.7
3,261,078	+				+1.7
3,261,078	+				+0.2
3,261,079	-				-0.1
3,261,185	+		Psyr_2686	0.12	+0.9
3,261,186	-		Psyr_2686	0.12	+1.8
3,261,186	-		Psyr_2686	0.12	-0.0
3,261,186	-		Psyr_2686	0.12	-0.8
3,261,188	-		Psyr_2686	0.12	-0.4
3,261,233	+		Psyr_2686	0.17	-2.3
3,261,233	+		Psyr_2686	0.17	-0.2
3,261,233	+		Psyr_2686	0.17	-1.8
3,261,234	-		Psyr_2686	0.17	-2.2
3,261,234	-		Psyr_2686	0.17	+1.6
3,261,234	-		Psyr_2686	0.17	+0.2
3,261,234	-		Psyr_2686	0.17	+4.9
3,261,262	+		Psyr_2686	0.20	-0.6
3,261,263	-		Psyr_2686	0.20	+1.4
3,261,293	+		Psyr_2686	0.24	+4.4
3,261,325	+		Psyr_2686	0.27	-2.1
3,261,325	+		Psyr_2686	0.27	-0.6
3,261,326	-		Psyr_2686	0.27	-0.3
3,261,327	+		Psyr_2686	0.27	+0.3
3,261,327	+		Psyr_2686	0.27	+0.4
3,261,328	-		Psyr_2686	0.27	+1.8
3,261,453	-		Psyr_2686	0.41	+1.7
3,261,454	+		Psyr_2686	0.41	-0.8
3,261,454	+		Psyr_2686	0.41	-0.8
3,261,454	+		Psyr_2686	0.41	-0.5
3,261,455	-		Psyr_2686	0.41	+0.1
3,261,455	-		Psyr_2686	0.41	+2.4
3,261,455	-		Psyr_2686	0.41	-0.8
3,261,520	-		Psyr_2686	0.48	-2.8
3,261,520	-		Psyr_2686	0.48	-0.2
3,261,520	-		Psyr_2686	0.48	+0.2
3,261,523	+		Psyr_2686	0.48	-1.3
3,261,524	-		Psyr_2686	0.48	-0.9
3,261,524	-		Psyr_2686	0.48	-1.3
3,261,524	-		Psyr_2686	0.48	-1.9
3,261,552	+		Psyr_2686	0.52	-1.2
3,261,553	-		Psyr_2686	0.52	-0.9
3,261,553	-		Psyr_2686	0.52	-1.2
3,261,553	-		Psyr_2686	0.52	-0.9
3,261,643	+		Psyr_2686	0.61	-1.8
3,261,643	+		Psyr_2686	0.61	-0.5
3,261,643	+		Psyr_2686	0.61	+1.8
3,261,643	+		Psyr_2686	0.61	+0.1
3,261,643	+		Psyr_2686	0.61	-3.1
3,261,643	+		Psyr_2686	0.61	+1.4
3,261,644	-		Psyr_2686	0.61	+0.1
3,261,644	-		Psyr_2686	0.61	-0.2
3,261,644	-		Psyr_2686	0.61	-1.2
3,261,644	-		Psyr_2686	0.61	+1.9
3,261,645	+		Psyr_2686	0.62	-0.6
3,261,767	-		Psyr_2686	0.75	+1.3
3,261,767	-		Psyr_2686	0.75	+2.4
3,261,987	+				-0.1
3,261,995	-				+2.1
3,262,016	+				+2.3
3,262,016	+				-0.9
3,262,016	+				-0.2
3,262,016	+				-0.4
3,262,016	+				+0.1
3,262,016	+				+2.5
3,262,020	+				+0.5
3,262,020	+				-2.1
3,262,021	-				-0.0
3,262,021	-				+0.4
3,262,021	-				-1.4
3,262,021	-				-2.8
3,262,146	+				+1.4
3,262,146	+				+0.6
3,262,146	+				-0.3
3,262,210	+				-0.4
3,262,380	+		Psyr_2687	0.17	-0.9
3,262,381	-		Psyr_2687	0.17	-0.1
3,262,592	+		Psyr_2687	0.32	-2.0
3,262,593	-		Psyr_2687	0.32	+2.8
3,262,660	+		Psyr_2687	0.37	-2.2
3,262,660	+		Psyr_2687	0.37	-1.7
3,262,660	+		Psyr_2687	0.37	-1.5
3,262,661	-		Psyr_2687	0.37	+3.0
3,262,661	-		Psyr_2687	0.37	+0.0
3,262,744	+		Psyr_2687	0.43	+0.7
3,262,744	+		Psyr_2687	0.43	-1.9
3,262,744	+		Psyr_2687	0.43	-1.1
3,262,744	+		Psyr_2687	0.43	+0.4
3,262,744	+		Psyr_2687	0.43	-0.6
3,262,744	+		Psyr_2687	0.43	-1.3
3,262,745	-		Psyr_2687	0.43	-0.4
3,262,745	-		Psyr_2687	0.43	-0.9
3,262,745	-		Psyr_2687	0.43	-1.4
3,262,745	-		Psyr_2687	0.43	-0.7
3,262,774	+		Psyr_2687	0.45	+2.5
3,262,774	+		Psyr_2687	0.45	-0.2
3,262,774	+		Psyr_2687	0.45	+0.1
3,262,774	+		Psyr_2687	0.45	-1.4
3,262,774	+		Psyr_2687	0.45	+0.3
3,262,775	-		Psyr_2687	0.45	+1.9
3,262,775	-		Psyr_2687	0.45	-1.6
3,262,775	-		Psyr_2687	0.45	+2.6
3,262,775	-		Psyr_2687	0.45	+4.0
3,262,775	-		Psyr_2687	0.45	+0.0
3,262,840	-		Psyr_2687	0.50	-2.2
3,262,850	+		Psyr_2687	0.51	-0.2
3,262,872	+		Psyr_2687	0.52	-1.2
3,262,873	-		Psyr_2687	0.52	-1.3
3,262,873	-		Psyr_2687	0.52	+0.8