Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2684

Experiment: apoplastic, sonication recovery; Green bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	apoplastic, sonication recovery; Green bean
3,257,723	+		Psyr_2683	0.38	+1.1
3,257,786	+		Psyr_2683	0.42	+0.4
3,257,809	+		Psyr_2683	0.44	-3.1
3,257,834	+		Psyr_2683	0.46	-0.0
3,257,834	+		Psyr_2683	0.46	-2.8
3,257,902	+		Psyr_2683	0.50	-2.4
3,257,903	-		Psyr_2683	0.51	+0.4
3,257,929	+		Psyr_2683	0.52	-2.6
3,257,929	+		Psyr_2683	0.52	-2.5
3,257,929	+		Psyr_2683	0.52	-0.2
3,257,929	+		Psyr_2683	0.52	-1.4
3,257,929	+		Psyr_2683	0.52	-1.4
3,257,929	+		Psyr_2683	0.52	+1.4
3,257,929	+		Psyr_2683	0.52	-0.2
3,257,930	-		Psyr_2683	0.52	-0.8
3,257,930	-		Psyr_2683	0.52	+0.1
3,257,930	-		Psyr_2683	0.52	-1.8
3,257,932	+		Psyr_2683	0.53	-2.4
3,258,005	+		Psyr_2683	0.58	-2.6
3,258,005	+		Psyr_2683	0.58	-0.6
3,258,005	+		Psyr_2683	0.58	+0.9
3,258,005	+		Psyr_2683	0.58	-0.9
3,258,005	+		Psyr_2683	0.58	+0.9
3,258,005	+		Psyr_2683	0.58	-0.9
3,258,005	+		Psyr_2683	0.58	+0.9
3,258,005	+		Psyr_2683	0.58	-0.9
3,258,005	+		Psyr_2683	0.58	+1.2
3,258,005	+		Psyr_2683	0.58	-0.4
3,258,005	+		Psyr_2683	0.58	-0.9
3,258,005	+		Psyr_2683	0.58	-0.9
3,258,005	+		Psyr_2683	0.58	-1.4
3,258,005	+		Psyr_2683	0.58	-0.6
3,258,005	+		Psyr_2683	0.58	+2.0
3,258,005	+		Psyr_2683	0.58	+2.6
3,258,005	+		Psyr_2683	0.58	-0.0
3,258,005	+		Psyr_2683	0.58	+2.2
3,258,005	+		Psyr_2683	0.58	+1.0
3,258,005	+		Psyr_2683	0.58	+1.4
3,258,005	+		Psyr_2683	0.58	+1.8
3,258,006	-		Psyr_2683	0.58	-0.8
3,258,006	-		Psyr_2683	0.58	+2.0
3,258,006	-		Psyr_2683	0.58	-2.4
3,258,006	-		Psyr_2683	0.58	+0.9
3,258,006	-		Psyr_2683	0.58	-0.3
3,258,006	-		Psyr_2683	0.58	-0.6
3,258,006	-		Psyr_2683	0.58	-0.5
3,258,006	-		Psyr_2683	0.58	-0.7
3,258,007	+		Psyr_2683	0.58	+0.6
3,258,007	+		Psyr_2683	0.58	+1.7
3,258,007	+		Psyr_2683	0.58	+0.4
3,258,007	+		Psyr_2683	0.58	-1.4
3,258,007	+		Psyr_2683	0.58	-1.6
3,258,007	+		Psyr_2683	0.58	-2.3
3,258,007	+		Psyr_2683	0.58	+0.7
3,258,008	-		Psyr_2683	0.58	-0.3
3,258,040	+		Psyr_2683	0.60	-2.2
3,258,040	+		Psyr_2683	0.60	+0.5
3,258,100	+		Psyr_2683	0.64	+1.6
3,258,100	+		Psyr_2683	0.64	+2.9
3,258,101	-		Psyr_2683	0.64	+1.4
3,258,101	-		Psyr_2683	0.64	+3.5
3,258,125	+		Psyr_2683	0.66	+1.1
3,258,125	+		Psyr_2683	0.66	-1.6
3,258,125	+		Psyr_2683	0.66	-1.9
3,258,125	+		Psyr_2683	0.66	-0.3
3,258,125	+		Psyr_2683	0.66	+0.7
3,258,125	+		Psyr_2683	0.66	-1.1
3,258,125	+		Psyr_2683	0.66	-2.7
3,258,125	+		Psyr_2683	0.66	-0.2
3,258,125	+		Psyr_2683	0.66	-1.6
3,258,126	-				+2.4
3,258,126	-		Psyr_2683	0.66	+1.3
3,258,126	-		Psyr_2683	0.66	+0.9
3,258,126	-		Psyr_2683	0.66	-1.4
3,258,126	-		Psyr_2683	0.66	-2.5
3,258,126	-		Psyr_2683	0.66	+1.0
3,258,239	+		Psyr_2683	0.74	-0.2
3,258,239	+		Psyr_2683	0.74	+1.0
3,258,239	+		Psyr_2683	0.74	-0.9
3,258,240	-		Psyr_2683	0.74	+0.2
3,258,240	-		Psyr_2683	0.74	-0.9
3,258,240	-		Psyr_2683	0.74	+2.7
3,258,243	+		Psyr_2683	0.74	+1.6
3,258,243	+		Psyr_2683	0.74	-0.3
3,258,243	+		Psyr_2683	0.74	-1.6
3,258,243	+		Psyr_2683	0.74	+1.4
3,258,244	-		Psyr_2683	0.74	+0.4
3,258,244	-		Psyr_2683	0.74	+0.9
3,258,244	-		Psyr_2683	0.74	-1.4
3,258,244	-		Psyr_2683	0.74	+0.8
3,258,244	-		Psyr_2683	0.74	+0.8
3,258,258	+		Psyr_2683	0.75	-1.6
3,258,259	-		Psyr_2683	0.75	+0.3
3,258,288	+		Psyr_2683	0.78	+2.0
3,258,307	-		Psyr_2683	0.79	+0.5
3,258,415	+		Psyr_2683	0.86	-0.1
3,258,416	-		Psyr_2683	0.86	-1.6
3,258,417	+		Psyr_2683	0.87	+3.5
3,258,418	-		Psyr_2683	0.87	+0.3
3,258,418	-		Psyr_2683	0.87	+2.2
3,258,418	-		Psyr_2683	0.87	+1.8
3,258,435	+		Psyr_2683	0.88	-2.3
3,258,435	+		Psyr_2683	0.88	+2.5
3,258,435	+		Psyr_2683	0.88	+1.0
3,258,459	+		Psyr_2683	0.89	-0.7
3,258,554	+				-0.1
3,258,557	-				-0.2
3,258,566	+				+1.0
3,258,566	+				-1.2
3,258,583	+				+0.7
3,258,585	+				+3.4
3,258,585	+				-0.7
3,258,585	+				+1.0
3,258,585	+				+2.9
3,258,586	-				-2.5
3,258,630	-				-2.1
3,258,703	-				-1.3
3,258,747	-				+0.5
3,258,748	+				-0.5
3,258,748	+				-0.3
3,258,748	+				-2.8
3,258,749	-				-1.1
3,258,749	-				+1.9
3,258,749	-				-0.8
3,258,749	-				+1.9
3,258,749	-				+3.2
3,258,780	+		Psyr_2684	0.11	-1.2
3,258,781	-		Psyr_2684	0.11	+0.4
3,258,979	+		Psyr_2684	0.27	+0.6
3,258,980	-		Psyr_2684	0.27	+0.3
3,259,132	+		Psyr_2684	0.39	+0.4
3,259,180	+		Psyr_2684	0.43	+1.9
3,259,180	+		Psyr_2684	0.43	+1.4
3,259,180	+		Psyr_2684	0.43	+0.2
3,259,180	+		Psyr_2684	0.43	-1.9
3,259,181	-		Psyr_2684	0.43	+1.7
3,259,184	+		Psyr_2684	0.43	+1.2
3,259,184	+		Psyr_2684	0.43	-1.5
3,259,184	+		Psyr_2684	0.43	-2.1
3,259,184	+		Psyr_2684	0.43	+1.0
3,259,184	+		Psyr_2684	0.43	+0.1
3,259,184	+		Psyr_2684	0.43	+0.9
3,259,184	+		Psyr_2684	0.43	+0.3
3,259,185	-		Psyr_2684	0.43	+1.1
3,259,185	-		Psyr_2684	0.43	+2.0
3,259,185	-		Psyr_2684	0.43	-0.6
3,259,226	-		Psyr_2684	0.46	+0.5
3,259,229	+		Psyr_2684	0.47	-0.2
3,259,229	+		Psyr_2684	0.47	-0.9
3,259,229	+		Psyr_2684	0.47	+0.4
3,259,230	-		Psyr_2684	0.47	-1.8
3,259,230	-		Psyr_2684	0.47	-1.2
3,259,456	+		Psyr_2684	0.65	-1.6
3,259,457	-		Psyr_2684	0.65	+2.0
3,259,521	+		Psyr_2684	0.70	-0.9
3,259,521	+		Psyr_2684	0.70	+0.6
3,259,522	-		Psyr_2684	0.70	-1.1
3,259,522	-		Psyr_2684	0.70	+1.5
3,259,533	+		Psyr_2684	0.71	+0.6
3,259,588	+		Psyr_2684	0.75	+0.3
3,259,594	+		Psyr_2684	0.76	+0.2
3,259,594	+		Psyr_2684	0.76	+2.4
3,259,596	+		Psyr_2684	0.76	-2.9
3,259,596	+		Psyr_2684	0.76	+2.1
3,259,596	+		Psyr_2684	0.76	-0.2
3,259,596	+		Psyr_2684	0.76	+0.8
3,259,596	+		Psyr_2684	0.76	+0.6
3,259,596	+		Psyr_2684	0.76	+0.4
3,259,597	-		Psyr_2684	0.76	+1.6
3,259,597	-		Psyr_2684	0.76	+0.6
3,259,597	-		Psyr_2684	0.76	+2.0
3,259,597	-		Psyr_2684	0.76	+1.4
3,259,597	-		Psyr_2684	0.76	-2.7
3,259,597	-		Psyr_2684	0.76	-1.3
3,259,681	+		Psyr_2684	0.82	+1.3
3,259,681	+		Psyr_2684	0.82	+2.5
3,259,681	+		Psyr_2684	0.82	+0.5
3,259,757	+		Psyr_2684	0.89	-2.4
3,259,768	+		Psyr_2684	0.89	-2.1
3,259,769	-		Psyr_2684	0.89	+0.4
3,259,769	-		Psyr_2684	0.89	+2.5
3,259,772	+		Psyr_2684	0.90	-2.4
3,259,772	+		Psyr_2684	0.90	+0.8
3,259,772	+		Psyr_2684	0.90	+2.1
3,259,773	-		Psyr_2684	0.90	-1.4
3,259,773	-		Psyr_2684	0.90	+1.0
3,259,773	-		Psyr_2684	0.90	+2.3
3,260,073	+		Psyr_2685	0.10	-0.1
3,260,073	+		Psyr_2685	0.10	-1.1
3,260,073	+		Psyr_2685	0.10	+1.6
3,260,073	+		Psyr_2685	0.10	+1.4
3,260,073	+		Psyr_2685	0.10	+1.1
3,260,073	+		Psyr_2685	0.10	+0.3
3,260,074	-		Psyr_2685	0.10	+2.2
3,260,074	-		Psyr_2685	0.10	-1.9
3,260,074	-		Psyr_2685	0.10	-0.6
3,260,076	-		Psyr_2685	0.11	-2.2
3,260,076	-		Psyr_2685	0.11	-1.2
3,260,076	-		Psyr_2685	0.11	-0.2
3,260,076	-		Psyr_2685	0.11	+0.4
3,260,076	-		Psyr_2685	0.11	+1.8
3,260,076	-		Psyr_2685	0.11	+0.5
3,260,113	+		Psyr_2685	0.14	-0.9
3,260,114	-		Psyr_2685	0.14	-1.2
3,260,122	+		Psyr_2685	0.15	-2.1
3,260,196	+		Psyr_2685	0.23	-2.3
3,260,196	+		Psyr_2685	0.23	+2.3
3,260,196	+		Psyr_2685	0.23	-0.8
3,260,196	+		Psyr_2685	0.23	+0.5
3,260,196	+		Psyr_2685	0.23	-2.1
3,260,196	+		Psyr_2685	0.23	-2.4
3,260,196	+		Psyr_2685	0.23	-2.2
3,260,196	+		Psyr_2685	0.23	+3.1
3,260,196	+		Psyr_2685	0.23	-1.6
3,260,196	+		Psyr_2685	0.23	-0.9
3,260,197	-		Psyr_2685	0.23	+0.8
3,260,197	-		Psyr_2685	0.23	-0.6
3,260,197	-		Psyr_2685	0.23	-1.9
3,260,197	-		Psyr_2685	0.23	+1.0
3,260,197	-		Psyr_2685	0.23	-0.9
3,260,197	-		Psyr_2685	0.23	+0.1
3,260,197	-		Psyr_2685	0.23	-3.0
3,260,197	-		Psyr_2685	0.23	-2.8
3,260,197	-		Psyr_2685	0.23	+1.6
3,260,199	-		Psyr_2685	0.23	-0.0
3,260,286	+		Psyr_2685	0.31	-0.9
3,260,395	+		Psyr_2685	0.42	-2.8
3,260,396	-		Psyr_2685	0.42	+1.8
3,260,396	-		Psyr_2685	0.42	-1.3
3,260,396	-		Psyr_2685	0.42	+1.8
3,260,442	+		Psyr_2685	0.47	-2.6
3,260,443	-		Psyr_2685	0.47	-1.4
3,260,443	-		Psyr_2685	0.47	+1.2
3,260,443	-		Psyr_2685	0.47	-2.5
3,260,449	-		Psyr_2685	0.48	+0.8
3,260,449	-		Psyr_2685	0.48	-1.8
3,260,466	+		Psyr_2685	0.49	+0.7
3,260,466	+		Psyr_2685	0.49	+0.0
3,260,658	-		Psyr_2685	0.68	+3.4