Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1574

Experiment: apoplastic, sonication recovery; Green bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	apoplastic, sonication recovery; Green bean
1,767,591	-				-0.8
1,767,591	-				-1.6
1,767,683	+		Psyr_1572	0.25	-1.7
1,767,683	+		Psyr_1572	0.25	-1.5
1,767,684	-		Psyr_1572	0.25	+2.0
1,767,684	-		Psyr_1572	0.25	+0.6
1,767,725	+		Psyr_1572	0.36	+2.0
1,767,726	-		Psyr_1572	0.37	+0.8
1,767,794	-		Psyr_1572	0.55	-2.4
1,767,794	-		Psyr_1572	0.55	-2.2
1,767,794	-		Psyr_1572	0.55	+1.1
1,767,858	-		Psyr_1572	0.72	+0.6
1,767,858	-		Psyr_1572	0.72	-2.7
1,768,048	+				+0.0
1,768,048	+				+1.8
1,768,048	+				+1.5
1,768,048	+				-0.1
1,768,048	+				-0.7
1,768,049	-				-1.0
1,768,049	-				+0.0
1,768,049	-				+1.0
1,768,049	-				-0.7
1,768,049	-				+1.4
1,768,049	-				+2.5
1,768,171	+		Psyr_1573	0.30	+2.0
1,768,171	+		Psyr_1573	0.30	+2.5
1,768,171	+		Psyr_1573	0.30	-0.1
1,768,195	-		Psyr_1573	0.35	+7.0
1,768,195	-		Psyr_1573	0.35	+3.2
1,768,408	+		Psyr_1573	0.79	-1.0
1,768,414	-		Psyr_1573	0.81	-1.6
1,768,509	+				-0.4
1,768,509	+				+1.7
1,768,509	+				-0.7
1,768,509	+				-3.3
1,768,509	+				+1.9
1,768,510	-				+2.5
1,768,510	-				-2.0
1,768,510	-				-1.1
1,768,510	-				-1.0
1,768,510	-				-2.4
1,768,510	-				+2.4
1,768,510	-				-1.4
1,768,510	-				+0.9
1,768,510	-				-1.1
1,768,510	-				+0.4
1,768,518	+				+0.0
1,768,556	+				+0.9
1,768,557	-				-2.2
1,768,557	-				-2.9
1,768,557	-				+0.4
1,768,557	-				-2.2
1,768,560	-				+3.0
1,768,560	-				-0.7
1,768,560	-				-1.1
1,768,560	-				-1.0
1,768,560	-				+3.5
1,768,601	+				-1.6
1,768,601	+				-2.7
1,768,613	-				-0.7
1,768,613	-				+3.1
1,768,761	+				-1.3
1,768,761	+				-1.4
1,768,860	+		Psyr_1574	0.13	+1.8
1,768,943	+		Psyr_1574	0.17	+1.2
1,768,943	+		Psyr_1574	0.17	+1.4
1,768,943	+		Psyr_1574	0.17	+1.1
1,768,943	+		Psyr_1574	0.17	-0.2
1,768,943	+		Psyr_1574	0.17	+0.2
1,768,944	-		Psyr_1574	0.18	-2.0
1,768,944	-		Psyr_1574	0.18	-0.8
1,768,944	-		Psyr_1574	0.18	+0.6
1,768,944	-		Psyr_1574	0.18	-2.0
1,768,944	-		Psyr_1574	0.18	+0.0
1,769,284	-		Psyr_1574	0.34	+0.0
1,769,284	-		Psyr_1574	0.34	-2.5
1,769,382	+		Psyr_1574	0.39	-0.7
1,769,382	+		Psyr_1574	0.39	-3.0
1,769,382	+		Psyr_1574	0.39	-0.0
1,769,383	-		Psyr_1574	0.39	+0.4
1,769,383	-		Psyr_1574	0.39	-0.5
1,769,383	-		Psyr_1574	0.39	-0.9
1,769,383	-		Psyr_1574	0.39	-0.4
1,769,383	-		Psyr_1574	0.39	+1.1
1,769,490	+		Psyr_1574	0.44	-0.9
1,769,538	+		Psyr_1574	0.46	-1.2
1,769,538	+		Psyr_1574	0.46	-1.4
1,769,538	+		Psyr_1574	0.46	+0.2
1,769,538	+		Psyr_1574	0.46	+0.8
1,769,538	+		Psyr_1574	0.46	-2.5
1,769,538	+		Psyr_1574	0.46	-2.5
1,769,538	+		Psyr_1574	0.46	-0.4
1,769,538	+		Psyr_1574	0.46	-1.0
1,769,539	-		Psyr_1574	0.46	-1.3
1,769,539	-		Psyr_1574	0.46	+0.8
1,769,539	-		Psyr_1574	0.46	+0.3
1,769,539	-		Psyr_1574	0.46	-2.9
1,769,539	-		Psyr_1574	0.46	-0.1
1,769,539	-		Psyr_1574	0.46	+0.8
1,769,539	-		Psyr_1574	0.46	+0.9
1,769,539	-		Psyr_1574	0.46	+1.8
1,769,539	-		Psyr_1574	0.46	+2.5
1,769,548	-		Psyr_1574	0.47	+0.8
1,769,597	+		Psyr_1574	0.49	-1.2
1,769,597	+		Psyr_1574	0.49	-0.3
1,769,597	+		Psyr_1574	0.49	+1.1
1,769,597	+		Psyr_1574	0.49	-0.8
1,769,597	+		Psyr_1574	0.49	-1.3
1,769,598	-		Psyr_1574	0.49	+2.7
1,769,598	-		Psyr_1574	0.49	-0.8
1,769,751	+		Psyr_1574	0.57	+0.7
1,769,833	-		Psyr_1574	0.61	-0.2
1,770,031	+		Psyr_1574	0.70	+1.7
1,770,174	+		Psyr_1574	0.77	-1.9
1,770,174	+		Psyr_1574	0.77	+2.8
1,770,174	+		Psyr_1574	0.77	-2.7
1,770,175	-		Psyr_1574	0.77	-0.9
1,770,183	+		Psyr_1574	0.78	-1.5
1,770,184	-		Psyr_1574	0.78	-1.4
1,770,369	+		Psyr_1574	0.87	+0.7
1,770,370	-		Psyr_1574	0.87	+1.1
1,770,370	-		Psyr_1574	0.87	-2.0
1,770,396	+		Psyr_1574	0.88	-1.8
1,770,397	-		Psyr_1574	0.88	-2.6
1,770,397	-		Psyr_1574	0.88	+0.6
1,770,399	+		Psyr_1574	0.88	-0.4
1,770,405	+		Psyr_1574	0.88	-1.7
1,770,406	-		Psyr_1574	0.88	-0.1
1,770,406	-		Psyr_1574	0.88	+3.4
1,770,580	-				-1.4
1,770,659	-				-1.0
1,770,678	+				+0.5
1,770,743	-				+0.0
1,770,763	+				+0.0
1,770,791	+				+1.0
1,770,920	-		Psyr_1575	0.30	+0.2
1,770,920	-		Psyr_1575	0.30	-2.9
1,770,920	-		Psyr_1575	0.30	-0.3
1,771,009	+		Psyr_1575	0.49	+4.1
1,771,010	-		Psyr_1575	0.49	+1.0
1,771,040	+		Psyr_1575	0.55	+1.3
1,771,040	+		Psyr_1575	0.55	-0.8
1,771,040	+		Psyr_1575	0.55	-1.6
1,771,040	+		Psyr_1575	0.55	-2.0
1,771,040	+		Psyr_1575	0.55	-1.6
1,771,040	+		Psyr_1575	0.55	+0.2
1,771,040	+		Psyr_1575	0.55	-1.7
1,771,040	+		Psyr_1575	0.55	-0.7
1,771,040	+		Psyr_1575	0.55	+0.3
1,771,040	+		Psyr_1575	0.55	-1.1
1,771,040	+		Psyr_1575	0.55	-1.4
1,771,040	+		Psyr_1575	0.55	-0.4
1,771,040	+		Psyr_1575	0.55	-1.0
1,771,040	+		Psyr_1575	0.55	-1.0
1,771,040	+		Psyr_1575	0.55	+3.0
1,771,040	+		Psyr_1575	0.55	-0.9
1,771,040	+		Psyr_1575	0.55	-1.5
1,771,040	+		Psyr_1575	0.55	+0.3
1,771,040	+		Psyr_1575	0.55	-0.2
1,771,040	+		Psyr_1575	0.55	+1.3
1,771,040	+		Psyr_1575	0.55	-3.4
1,771,040	+		Psyr_1575	0.55	+0.3
1,771,040	+		Psyr_1575	0.55	+0.1
1,771,040	+		Psyr_1575	0.55	+2.5
1,771,040	+		Psyr_1575	0.55	+1.1
1,771,040	+		Psyr_1575	0.55	-1.4
1,771,041	-		Psyr_1575	0.56	+1.7
1,771,041	-		Psyr_1575	0.56	-0.2
1,771,041	-		Psyr_1575	0.56	+4.0
1,771,041	-		Psyr_1575	0.56	-0.3
1,771,041	-		Psyr_1575	0.56	-0.2
1,771,041	-		Psyr_1575	0.56	-1.4
1,771,041	-		Psyr_1575	0.56	+0.0
1,771,041	-		Psyr_1575	0.56	-2.0
1,771,041	-		Psyr_1575	0.56	+0.0
1,771,041	-		Psyr_1575	0.56	+0.8
1,771,041	-		Psyr_1575	0.56	-1.0
1,771,041	-		Psyr_1575	0.56	-1.7
1,771,041	-		Psyr_1575	0.56	-2.5
1,771,041	-		Psyr_1575	0.56	+0.0
1,771,041	-		Psyr_1575	0.56	+2.4
1,771,041	-		Psyr_1575	0.56	+2.2
1,771,041	-		Psyr_1575	0.56	+0.5
1,771,041	-		Psyr_1575	0.56	-1.7
1,771,041	-		Psyr_1575	0.56	+0.8
1,771,041	-		Psyr_1575	0.56	+0.9
1,771,041	-		Psyr_1575	0.56	-1.1
1,771,041	-		Psyr_1575	0.56	+1.6
1,771,041	-		Psyr_1575	0.56	-2.0
1,771,045	+		Psyr_1575	0.56	+4.3
1,771,045	+		Psyr_1575	0.56	+2.3
1,771,045	+		Psyr_1575	0.56	+0.0
1,771,045	+		Psyr_1575	0.56	-0.4
1,771,045	+		Psyr_1575	0.56	-1.7
1,771,045	+		Psyr_1575	0.56	-1.5
1,771,045	+		Psyr_1575	0.56	-2.3
1,771,045	+		Psyr_1575	0.56	+2.8
1,771,045	+		Psyr_1575	0.56	+1.6
1,771,046	-		Psyr_1575	0.57	-2.1
1,771,046	-		Psyr_1575	0.57	+2.2
1,771,046	-		Psyr_1575	0.57	-1.0
1,771,046	-		Psyr_1575	0.57	+2.6
1,771,046	-		Psyr_1575	0.57	+0.4
1,771,046	-		Psyr_1575	0.57	-1.3
1,771,046	-		Psyr_1575	0.57	-0.4
1,771,187	+		Psyr_1575	0.86	-2.6
1,771,251	-				-0.5
1,771,339	+				+2.9
1,771,449	+		Psyr_1576	0.15	+0.2
1,771,450	-		Psyr_1576	0.15	-1.9
1,771,450	-		Psyr_1576	0.15	+0.3
1,771,559	+		Psyr_1576	0.29	+0.5
1,771,632	-		Psyr_1576	0.38	+0.6