Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1467

Experiment: apoplastic, sonication recovery; Green bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	apoplastic, sonication recovery; Green bean
1,653,983	+		Psyr_1465	0.52	+0.3
1,653,983	+		Psyr_1465	0.52	-1.2
1,653,983	+		Psyr_1465	0.52	-1.9
1,653,983	+		Psyr_1465	0.52	+0.0
1,653,983	+		Psyr_1465	0.52	+1.0
1,653,983	+		Psyr_1465	0.52	-2.4
1,653,983	+		Psyr_1465	0.52	+1.2
1,653,983	+		Psyr_1465	0.52	-1.1
1,653,984	-		Psyr_1465	0.52	-0.2
1,653,984	-		Psyr_1465	0.52	-1.6
1,653,984	-		Psyr_1465	0.52	+2.6
1,653,984	-		Psyr_1465	0.52	-2.0
1,653,984	-		Psyr_1465	0.52	-1.4
1,653,984	-		Psyr_1465	0.52	-0.0
1,654,184	+		Psyr_1465	0.85	+0.0
1,654,185	-				-1.0
1,654,185	-		Psyr_1465	0.85	-1.0
1,654,185	-		Psyr_1465	0.85	-1.8
1,654,224	+				-2.5
1,654,224	+				-1.0
1,654,224	+				+1.4
1,654,225	-				+2.5
1,654,225	-				-1.3
1,654,225	-				+0.4
1,654,225	-				+2.0
1,654,225	-				+2.5
1,654,274	+				+1.0
1,654,274	+				-0.7
1,654,274	+				-0.6
1,654,274	+				-2.2
1,654,275	-				-3.2
1,654,396	-		Psyr_1466	0.11	+1.6
1,654,438	-		Psyr_1466	0.19	+3.0
1,654,472	+		Psyr_1466	0.25	+0.5
1,654,473	-		Psyr_1466	0.25	+0.6
1,654,473	-		Psyr_1466	0.25	+0.9
1,654,485	+		Psyr_1466	0.28	+0.2
1,654,486	-		Psyr_1466	0.28	-1.8
1,654,486	-		Psyr_1466	0.28	-1.6
1,654,572	+		Psyr_1466	0.44	-1.2
1,654,572	+		Psyr_1466	0.44	+3.7
1,654,572	+		Psyr_1466	0.44	+3.8
1,654,572	+		Psyr_1466	0.44	-1.7
1,654,572	+		Psyr_1466	0.44	+1.9
1,654,572	+		Psyr_1466	0.44	+0.0
1,654,573	-		Psyr_1466	0.44	-1.4
1,654,573	-		Psyr_1466	0.44	+0.0
1,654,573	-		Psyr_1466	0.44	-1.0
1,654,573	-		Psyr_1466	0.44	-1.2
1,654,573	-		Psyr_1466	0.44	+2.4
1,654,573	-		Psyr_1466	0.44	-1.9
1,654,573	-		Psyr_1466	0.44	-1.3
1,654,573	-		Psyr_1466	0.44	-0.8
1,654,573	-		Psyr_1466	0.44	+1.3
1,654,573	-		Psyr_1466	0.44	-0.3
1,654,573	-		Psyr_1466	0.44	-1.2
1,654,574	+		Psyr_1466	0.45	-1.4
1,654,574	+		Psyr_1466	0.45	+0.6
1,654,574	+		Psyr_1466	0.45	+0.5
1,654,574	+		Psyr_1466	0.45	-1.0
1,654,574	+		Psyr_1466	0.45	-1.1
1,654,574	+		Psyr_1466	0.45	+1.7
1,654,574	+		Psyr_1466	0.45	+0.7
1,654,574	+		Psyr_1466	0.45	-2.4
1,654,574	+		Psyr_1466	0.45	+1.9
1,654,575	-		Psyr_1466	0.45	+0.4
1,654,575	-		Psyr_1466	0.45	-1.0
1,654,575	-		Psyr_1466	0.45	-0.2
1,654,575	-		Psyr_1466	0.45	+1.0
1,654,575	-		Psyr_1466	0.45	+0.8
1,654,575	-		Psyr_1466	0.45	+0.6
1,654,580	+		Psyr_1466	0.46	-1.2
1,654,580	+		Psyr_1466	0.46	+0.0
1,654,660	-		Psyr_1466	0.61	-0.3
1,654,685	+		Psyr_1466	0.66	+0.8
1,654,685	+		Psyr_1466	0.66	+0.9
1,654,736	+		Psyr_1466	0.75	+1.6
1,654,736	+		Psyr_1466	0.75	-3.3
1,654,736	+		Psyr_1466	0.75	-2.1
1,654,736	+		Psyr_1466	0.75	+1.0
1,654,736	+		Psyr_1466	0.75	-0.4
1,654,737	-		Psyr_1466	0.76	+0.6
1,654,737	-		Psyr_1466	0.76	-2.4
1,654,843	+				-3.1
1,654,843	+				-1.4
1,654,844	-				-2.8
1,654,844	-				+1.5
1,654,847	+				+0.6
1,654,881	+				+2.0
1,654,882	-				-0.6
1,654,884	+				-1.6
1,654,884	+				-0.2
1,654,885	-				-2.8
1,654,885	-				-1.6
1,654,921	+				-0.9
1,654,921	+				-1.4
1,654,921	+				+0.0
1,654,921	+				+0.3
1,654,921	+				+1.6
1,654,922	-				+2.0
1,654,922	-				-0.2
1,654,922	-				-1.2
1,654,922	-				-1.8
1,654,922	-				-1.4
1,654,922	-				-0.2
1,654,928	-				+1.2
1,654,957	+				-0.4
1,654,957	+				+0.6
1,654,957	+				+2.0
1,654,957	+				+2.0
1,655,049	+		Psyr_1467	0.16	+1.4
1,655,049	+		Psyr_1467	0.16	-2.6
1,655,049	+		Psyr_1467	0.16	+0.5
1,655,050	-		Psyr_1467	0.16	+2.3
1,655,383	+		Psyr_1467	0.70	+1.0
1,655,384	-		Psyr_1467	0.70	+1.3
1,655,387	-		Psyr_1467	0.71	+2.2
1,655,387	-		Psyr_1467	0.71	-0.4
1,655,387	-		Psyr_1467	0.71	-1.4
1,655,387	-		Psyr_1467	0.71	-0.4
1,655,441	-		Psyr_1467	0.80	+2.4
1,655,545	+				+0.6
1,655,568	+				+3.2
1,655,568	+				+0.9
1,655,569	-				-1.7
1,655,569	-				+0.6
1,655,593	+				+1.4
1,655,593	+				-2.5
1,655,597	-				+1.8
1,655,652	+				+2.9
1,655,671	-				-0.7
1,655,698	+		Psyr_1468	0.10	-0.6
1,655,698	+		Psyr_1468	0.10	-0.7
1,655,698	+		Psyr_1468	0.10	+1.5
1,655,698	+		Psyr_1468	0.10	-0.1
1,655,698	+		Psyr_1468	0.10	+0.5
1,655,699	-		Psyr_1468	0.11	+1.9
1,655,699	-		Psyr_1468	0.11	-1.2
1,655,707	-		Psyr_1468	0.13	-0.9
1,655,720	+		Psyr_1468	0.17	+0.0
1,655,720	+		Psyr_1468	0.17	+1.4
1,655,720	+		Psyr_1468	0.17	-1.7
1,655,721	-		Psyr_1468	0.17	-1.0
1,655,745	-		Psyr_1468	0.23	-1.9
1,655,793	+		Psyr_1468	0.37	+0.0
1,655,793	+		Psyr_1468	0.37	+0.0
1,655,794	-		Psyr_1468	0.37	-0.9
1,655,807	+		Psyr_1468	0.40	-1.6
1,655,808	-		Psyr_1468	0.41	-1.4
1,655,891	-		Psyr_1468	0.64	-1.9
1,655,995	+				-1.9
1,655,995	+				-1.6
1,655,995	+				-3.6
1,655,995	+				+0.1
1,655,995	+				+1.3
1,655,995	+				-2.9
1,655,995	+				-0.1
1,655,995	+				-0.0
1,655,996	-				-0.4
1,655,996	-				-1.4
1,655,996	-				+1.3
1,655,996	-				+1.9
1,655,996	-				+5.1
1,655,996	-				-1.7
1,655,996	-				+4.3
1,655,996	-				-1.7
1,655,996	-				-2.9
1,655,998	+				+2.2
1,655,998	+				+1.7
1,655,998	+				-0.7
1,655,998	+				+0.8
1,655,998	+				+1.9
1,655,998	+				+0.8
1,655,998	+				-0.4
1,655,998	+				+3.0
1,655,999	-				+3.5
1,655,999	-				-0.6
1,655,999	-				+1.6
1,655,999	-				-0.4
1,655,999	-				-0.3
1,655,999	-				-2.6
1,655,999	-				+0.6
1,655,999	-				+1.4
1,655,999	-				-1.6
1,656,121	+		Psyr_1469	0.12	+1.8
1,656,122	-		Psyr_1469	0.12	+0.4
1,656,122	-		Psyr_1469	0.12	+3.1
1,656,123	+		Psyr_1469	0.12	+1.9
1,656,123	+		Psyr_1469	0.12	-1.4
1,656,123	+		Psyr_1469	0.12	-0.7
1,656,123	+		Psyr_1469	0.12	+1.6
1,656,123	+		Psyr_1469	0.12	-1.3
1,656,123	+		Psyr_1469	0.12	+0.4
1,656,123	+		Psyr_1469	0.12	-0.7
1,656,123	+		Psyr_1469	0.12	-3.0
1,656,123	+		Psyr_1469	0.12	+2.5
1,656,123	+		Psyr_1469	0.12	+3.9
1,656,123	+		Psyr_1469	0.12	-1.6
1,656,123	+		Psyr_1469	0.12	+0.2
1,656,123	+		Psyr_1469	0.12	-2.6
1,656,123	+		Psyr_1469	0.12	-0.7
1,656,123	+		Psyr_1469	0.12	-1.3
1,656,124	-		Psyr_1469	0.13	-0.1
1,656,124	-		Psyr_1469	0.13	+2.1
1,656,124	-		Psyr_1469	0.13	+1.2
1,656,124	-		Psyr_1469	0.13	+0.7
1,656,124	-		Psyr_1469	0.13	+3.1
1,656,124	-		Psyr_1469	0.13	+1.6
1,656,124	-		Psyr_1469	0.13	-0.6
1,656,124	-		Psyr_1469	0.13	+1.7
1,656,124	-		Psyr_1469	0.13	+1.5
1,656,124	-		Psyr_1469	0.13	-1.2
1,656,124	-		Psyr_1469	0.13	-1.8
1,656,124	-		Psyr_1469	0.13	+2.3
1,656,124	-		Psyr_1469	0.13	-0.3
1,656,124	-				-0.6
1,656,124	-		Psyr_1469	0.13	-1.4
1,656,124	-		Psyr_1469	0.13	+1.5
1,656,124	-		Psyr_1469	0.13	-2.0
1,656,124	-		Psyr_1469	0.13	-0.7
1,656,124	-		Psyr_1469	0.13	+0.2
1,656,124	-		Psyr_1469	0.13	-0.3
1,656,124	-		Psyr_1469	0.13	-0.4
1,656,124	-		Psyr_1469	0.13	-1.3
1,656,124	-		Psyr_1469	0.13	-0.2
1,656,124	-		Psyr_1469	0.13	+0.4
1,656,124	-		Psyr_1469	0.13	-0.2
1,656,124	-		Psyr_1469	0.13	+2.0
1,656,124	-		Psyr_1469	0.13	-0.2
1,656,125	+				-0.4
1,656,125	+		Psyr_1469	0.13	-2.0
1,656,125	+		Psyr_1469	0.13	-2.0
1,656,125	+		Psyr_1469	0.13	+0.0
1,656,125	+		Psyr_1469	0.13	+1.8
1,656,125	+		Psyr_1469	0.13	-1.7
1,656,125	+		Psyr_1469	0.13	-0.4
1,656,125	+		Psyr_1469	0.13	+0.6
1,656,125	+		Psyr_1469	0.13	+0.0
1,656,126	-		Psyr_1469	0.13	-1.0
1,656,126	-		Psyr_1469	0.13	+1.6
1,656,126	-		Psyr_1469	0.13	+2.2
1,656,126	-		Psyr_1469	0.13	+1.8
1,656,126	-		Psyr_1469	0.13	-0.1
1,656,126	-		Psyr_1469	0.13	+0.2
1,656,126	-		Psyr_1469	0.13	-0.1
1,656,126	-		Psyr_1469	0.13	-1.2
1,656,126	-		Psyr_1469	0.13	+0.6
1,656,126	-		Psyr_1469	0.13	-1.0
1,656,126	-		Psyr_1469	0.13	+0.4
1,656,158	-		Psyr_1469	0.23	-0.3
1,656,187	+		Psyr_1469	0.32	-0.2
1,656,187	+		Psyr_1469	0.32	-2.1
1,656,187	+		Psyr_1469	0.32	+1.1
1,656,188	-		Psyr_1469	0.33	-0.6
1,656,188	-		Psyr_1469	0.33	-0.4
1,656,188	-		Psyr_1469	0.33	+3.1
1,656,188	-		Psyr_1469	0.33	-0.3
1,656,188	-		Psyr_1469	0.33	+0.5
1,656,188	-		Psyr_1469	0.33	-1.2
1,656,269	-		Psyr_1469	0.58	+1.5
1,656,320	-		Psyr_1469	0.74	-1.4
1,656,320	-		Psyr_1469	0.74	+1.8
1,656,320	-		Psyr_1469	0.74	-0.5
1,656,323	+		Psyr_1469	0.75	-2.0
1,656,323	+		Psyr_1469	0.75	-2.4
1,656,326	+		Psyr_1469	0.76	-0.2
1,656,378	+				-1.8
1,656,379	-				+2.5
1,656,383	+				+2.1
1,656,383	+				+1.3
1,656,386	+				-2.3
1,656,389	+				+0.2
1,656,390	-				+0.5
1,656,414	-				+1.1
1,656,415	+				+0.4
1,656,416	-				+0.3
1,656,416	-				+0.0
1,656,459	-				+1.8
1,656,467	+				+1.3
1,656,468	-				+1.5
1,656,468	-				+1.0
1,656,490	-				-2.9
1,656,490	-				-2.0
1,656,544	+				-0.9