Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0932

Experiment: apoplastic, sonication recovery; Green bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	apoplastic, sonication recovery; Green bean
1,064,231	+		Psyr_0931	0.33	+0.7
1,064,231	+		Psyr_0931	0.33	-0.5
1,064,231	+		Psyr_0931	0.33	-2.4
1,064,231	+		Psyr_0931	0.33	-1.8
1,064,231	+		Psyr_0931	0.33	-0.1
1,064,231	+		Psyr_0931	0.33	+0.8
1,064,232	-		Psyr_0931	0.33	+2.0
1,064,232	-		Psyr_0931	0.33	-1.0
1,064,232	-		Psyr_0931	0.33	+1.7
1,064,238	+		Psyr_0931	0.34	-0.7
1,064,239	-		Psyr_0931	0.34	-0.1
1,064,245	-		Psyr_0931	0.34	+1.4
1,064,262	+		Psyr_0931	0.35	+0.5
1,064,263	-		Psyr_0931	0.35	-2.4
1,064,292	+		Psyr_0931	0.37	-0.8
1,064,292	+		Psyr_0931	0.37	-0.2
1,064,292	+		Psyr_0931	0.37	-1.4
1,064,293	-		Psyr_0931	0.37	-0.1
1,064,293	-		Psyr_0931	0.37	+1.9
1,064,293	-				+5.0
1,064,293	-		Psyr_0931	0.37	+2.0
1,064,293	-		Psyr_0931	0.37	+1.2
1,064,403	+		Psyr_0931	0.45	+0.7
1,064,404	-		Psyr_0931	0.45	-2.1
1,064,413	-		Psyr_0931	0.46	+0.5
1,064,451	+		Psyr_0931	0.48	-2.5
1,064,451	+		Psyr_0931	0.48	-1.8
1,064,452	-		Psyr_0931	0.48	+1.9
1,064,452	-		Psyr_0931	0.48	+1.2
1,064,452	-		Psyr_0931	0.48	-1.3
1,064,452	-		Psyr_0931	0.48	-1.6
1,064,454	+		Psyr_0931	0.48	+2.0
1,064,454	+		Psyr_0931	0.48	+0.7
1,064,454	+		Psyr_0931	0.48	+0.3
1,064,454	+		Psyr_0931	0.48	+4.2
1,064,454	+		Psyr_0931	0.48	-1.2
1,064,454	+		Psyr_0931	0.48	+1.1
1,064,454	+		Psyr_0931	0.48	+1.7
1,064,455	-		Psyr_0931	0.48	-0.7
1,064,455	-		Psyr_0931	0.48	-0.0
1,064,455	-		Psyr_0931	0.48	+0.7
1,064,455	-		Psyr_0931	0.48	+0.1
1,064,455	-		Psyr_0931	0.48	-0.5
1,064,455	-		Psyr_0931	0.48	+2.2
1,064,549	+		Psyr_0931	0.55	-0.8
1,064,549	+		Psyr_0931	0.55	+2.0
1,064,549	+		Psyr_0931	0.55	+1.4
1,064,549	+		Psyr_0931	0.55	+2.3
1,064,549	+		Psyr_0931	0.55	+2.2
1,064,549	+		Psyr_0931	0.55	-0.5
1,064,549	+		Psyr_0931	0.55	+0.5
1,064,549	+		Psyr_0931	0.55	-2.5
1,064,550	-		Psyr_0931	0.55	+0.4
1,064,550	-		Psyr_0931	0.55	+1.0
1,064,550	-		Psyr_0931	0.55	-1.0
1,064,550	-		Psyr_0931	0.55	-2.5
1,064,550	-		Psyr_0931	0.55	-1.5
1,064,550	-		Psyr_0931	0.55	+0.0
1,064,553	+		Psyr_0931	0.55	-0.4
1,064,553	+		Psyr_0931	0.55	-1.0
1,064,553	+		Psyr_0931	0.55	-0.9
1,064,554	-		Psyr_0931	0.55	+1.7
1,064,554	-		Psyr_0931	0.55	-1.5
1,064,575	+		Psyr_0931	0.57	+1.9
1,064,575	+		Psyr_0931	0.57	-0.5
1,064,575	+		Psyr_0931	0.57	-0.5
1,064,575	+		Psyr_0931	0.57	-1.8
1,064,576	-		Psyr_0931	0.57	+0.8
1,064,576	-		Psyr_0931	0.57	-1.8
1,064,576	-		Psyr_0931	0.57	+2.5
1,064,576	-		Psyr_0931	0.57	+1.9
1,065,058	+		Psyr_0931	0.90	-2.1
1,065,058	+		Psyr_0931	0.90	+0.0
1,065,058	+		Psyr_0931	0.90	-2.7
1,065,058	+		Psyr_0931	0.90	-2.5
1,065,059	-				+1.7
1,065,059	-				+1.6
1,065,059	-				+1.3
1,065,059	-				+0.3
1,065,059	-				-2.5
1,065,059	-				-0.5
1,065,059	-				+0.7
1,065,059	-				-0.7
1,065,059	-				-1.1
1,065,059	-				+1.1
1,065,059	-				+0.2
1,065,072	+				+3.2
1,065,197	+				-0.6
1,065,197	+				+1.6
1,065,197	+				+0.5
1,065,197	+				+2.6
1,065,198	-				+1.1
1,065,198	-				-0.4
1,065,198	-				-0.8
1,065,198	-				+1.6
1,065,198	-				+2.2
1,065,198	-				-3.0
1,065,198	-				-1.3
1,065,218	+				+1.2
1,065,218	+				-0.1
1,065,218	+				-0.9
1,065,284	+				-0.0
1,065,284	+				+0.0
1,065,284	+				-1.7
1,065,284	+				+0.3
1,065,284	+				+1.4
1,065,284	+				-0.7
1,065,284	+				-2.1
1,065,284	+				-0.4
1,065,284	+				-1.0
1,065,284	+				+1.7
1,065,284	+				-0.2
1,065,284	+				+1.4
1,065,284	+				-0.0
1,065,285	-				-1.4
1,065,285	-				+0.1
1,065,285	-				+0.2
1,065,285	-				-1.4
1,065,285	-				+1.0
1,065,285	-				+1.8
1,065,285	-				-1.5
1,065,285	-				+2.4
1,065,286	+				-1.8
1,065,286	+				+0.3
1,065,286	+				-1.7
1,065,287	-				-0.1
1,065,330	+		Psyr_0932	0.12	-0.6
1,065,364	+		Psyr_0932	0.16	+1.5
1,065,365	-		Psyr_0932	0.16	+0.2
1,065,365	-		Psyr_0932	0.16	+2.4
1,065,365	-		Psyr_0932	0.16	-2.2
1,065,527	+		Psyr_0932	0.35	+3.4
1,065,527	+		Psyr_0932	0.35	+1.3
1,065,563	-		Psyr_0932	0.39	+1.2
1,065,563	-		Psyr_0932	0.39	+3.0
1,065,601	-		Psyr_0932	0.43	-2.7
1,065,601	-		Psyr_0932	0.43	-2.6
1,065,657	-		Psyr_0932	0.49	+1.7
1,065,706	-		Psyr_0932	0.55	-1.8
1,065,816	-		Psyr_0932	0.67	-2.2
1,065,839	+		Psyr_0932	0.70	+0.2
1,065,839	+		Psyr_0932	0.70	-2.1
1,065,839	+		Psyr_0932	0.70	-0.2
1,065,839	+		Psyr_0932	0.70	-1.0
1,065,839	+		Psyr_0932	0.70	-1.7
1,065,839	+		Psyr_0932	0.70	-0.2
1,065,839	+		Psyr_0932	0.70	-1.5
1,065,839	+		Psyr_0932	0.70	+0.1
1,065,839	+		Psyr_0932	0.70	-1.5
1,065,839	+		Psyr_0932	0.70	-0.1
1,065,839	+		Psyr_0932	0.70	-0.5
1,065,839	+		Psyr_0932	0.70	+1.3
1,065,840	-		Psyr_0932	0.70	-0.1
1,065,840	-		Psyr_0932	0.70	-0.9
1,065,840	-		Psyr_0932	0.70	+2.4
1,065,840	-		Psyr_0932	0.70	-0.5
1,065,840	-		Psyr_0932	0.70	+1.7
1,065,840	-		Psyr_0932	0.70	+2.0
1,065,840	-		Psyr_0932	0.70	-2.4
1,065,840	-		Psyr_0932	0.70	+3.5
1,065,840	-		Psyr_0932	0.70	-1.1
1,065,840	-		Psyr_0932	0.70	-1.3
1,065,844	+		Psyr_0932	0.71	+2.3
1,065,844	+		Psyr_0932	0.71	-0.9
1,065,844	+		Psyr_0932	0.71	-2.8
1,065,844	+		Psyr_0932	0.71	+0.6
1,065,845	-		Psyr_0932	0.71	+0.1
1,065,962	+		Psyr_0932	0.84	-2.4
1,065,962	+		Psyr_0932	0.84	-0.2
1,065,963	-		Psyr_0932	0.84	+4.8
1,066,025	-				-0.8
1,066,032	+				+0.8
1,066,032	+				-3.1
1,066,032	+				-0.5
1,066,032	+				+0.6
1,066,032	+				+1.8
1,066,032	+				+0.1
1,066,032	+				+3.3
1,066,033	-				-1.5
1,066,033	-				-2.7
1,066,033	-				+1.0
1,066,033	-				+0.2
1,066,033	-				+2.2
1,066,033	-				+0.6
1,066,036	+				-2.9
1,066,036	+				-1.5
1,066,036	+				-3.0
1,066,036	+				+1.4
1,066,036	+				-1.8
1,066,036	+				+0.2
1,066,036	+				-0.4
1,066,036	+				-0.8
1,066,036	+				+0.4
1,066,036	+				+1.9
1,066,037	-				+0.4
1,066,037	-				-1.5
1,066,037	-				+0.9
1,066,037	-				+1.5
1,066,037	-				-1.5
1,066,077	+				+1.1
1,066,181	+				-0.4
1,066,182	-				+1.4
1,066,185	+				+1.7
1,066,185	+				-0.2
1,066,186	-				+0.5
1,066,186	-				-0.7
1,066,186	-				+4.7
1,066,186	-				+0.8
1,066,186	-				-2.8
1,066,186	-				+1.3
1,066,186	-				+1.9
1,066,262	+				+1.6
1,066,275	+				-3.1
1,066,275	+				+2.3
1,066,305	+				-1.0
1,066,305	+				-1.4
1,066,306	-				+0.0
1,066,306	-				-1.4
1,066,345	-				+1.0
1,066,382	+				+0.2
1,066,397	-				-1.8
1,066,418	+				-0.8
1,066,419	-				+2.5
1,066,419	-				-1.7
1,066,419	-				+1.8
1,066,460	+				+2.1
1,066,460	+				-2.1
1,066,460	+				-0.5
1,066,461	-				-0.8
1,066,461	-				+0.4
1,066,461	-				+0.6
1,066,461	-				-1.5
1,066,461	-				-1.8
1,066,461	-				+2.0
1,066,464	+				-2.5
1,066,464	+				-0.7
1,066,465	-				-0.8
1,066,465	-				-2.3
1,066,465	-				+3.1
1,066,465	-				+1.2
1,066,465	-				-0.5
1,066,465	-				-0.4
1,066,465	-				-1.2
1,066,468	-				-0.8
1,066,490	+				-2.3
1,066,491	-				-0.5
1,066,545	+				+0.5
1,066,546	-				-0.5
1,066,546	-				+0.8
1,066,560	+				+1.8
1,066,625	+				-0.4
1,066,626	-				+0.6
1,066,626	-				-2.8
1,066,630	-				-0.2
1,066,659	+				+0.8
1,066,660	-				-3.2
1,066,668	-				+0.2
1,066,668	-				+3.0
1,066,668	-				-2.2
1,066,709	+				+2.4
1,066,709	+				+1.5
1,066,709	+				-0.1
1,066,710	-				+1.2
1,066,710	-				-1.8
1,066,739	+				-1.1
1,066,739	+				+0.2
1,066,793	+				+0.5
1,066,793	+				-1.0
1,066,793	+				-0.5
1,066,793	+				-1.8
1,066,793	+				+0.7
1,066,793	+				-0.6
1,066,793	+				-0.1
1,066,793	+				-0.6
1,066,793	+				-0.7
1,066,793	+				+1.1
1,066,794	-				-1.0
1,066,794	-				+2.5
1,066,794	-				-0.5
1,066,794	-				-1.1
1,066,794	-				+1.6
1,066,794	-				+0.5
1,066,835	+				+3.1
1,066,835	+				-1.4
1,066,835	+				-0.4
1,066,836	-				+2.7
1,066,836	-				+0.2
1,066,895	+				+2.5
1,066,895	+				+0.4
1,066,895	+				-1.8
1,066,895	+				-2.3
1,066,896	-				-1.2
1,066,925	-				+0.4
1,066,953	+				-1.4
1,066,953	+				+0.9
1,066,954	-				+2.4
1,066,954	-				-1.2
1,066,954	-				+1.1
1,066,954	-				-2.3
1,066,954	-				+1.6
1,066,954	-				+1.1
1,067,042	+		Psyr_0933	0.12	-1.8
1,067,043	-		Psyr_0933	0.12	+1.0
1,067,043	-		Psyr_0933	0.12	-0.2
1,067,087	+		Psyr_0933	0.14	-0.3
1,067,088	-		Psyr_0933	0.14	-1.0
1,067,093	+		Psyr_0933	0.15	+2.1
1,067,093	+		Psyr_0933	0.15	-1.5