Experiment: apoplastic, sonication recovery; Green bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0594 and Psyr_0595 are separated by 26 nucleotides Psyr_0595 and Psyr_0596 are separated by 99 nucleotides
Psyr_0594: Psyr_0594 - NH(3)-dependent NAD(+) synthetase, at 682,122 to 682,949
_0594
Psyr_0595: Psyr_0595 - Nicotinate phosphoribosyltransferase, at 682,976 to 684,199
_0595
Psyr_0596: Psyr_0596 - transcriptional regulator, LysR family, at 684,299 to 685,204
_0596
Position (kb) 682
683
684
685 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 682.092 kb on - strand at 682.964 kb on - strand at 682.967 kb on + strand at 682.968 kb on - strand at 683.031 kb on + strand at 683.032 kb on - strand at 683.032 kb on - strand at 683.032 kb on - strand at 683.123 kb on + strand, within Psyr_0595 at 683.124 kb on - strand, within Psyr_0595 at 683.373 kb on + strand, within Psyr_0595 at 683.374 kb on - strand, within Psyr_0595 at 683.374 kb on - strand, within Psyr_0595 at 683.742 kb on + strand, within Psyr_0595 at 683.743 kb on - strand, within Psyr_0595 at 683.743 kb on - strand, within Psyr_0595 at 683.996 kb on + strand, within Psyr_0595 at 684.106 kb on - strand at 684.142 kb on - strand at 684.142 kb on - strand at 684.142 kb on - strand at 684.390 kb on + strand, within Psyr_0596 at 684.390 kb on + strand, within Psyr_0596 at 684.390 kb on + strand at 684.390 kb on + strand, within Psyr_0596 at 684.390 kb on + strand, within Psyr_0596 at 684.391 kb on - strand, within Psyr_0596 at 684.391 kb on - strand, within Psyr_0596 at 684.391 kb on - strand, within Psyr_0596 at 684.393 kb on + strand, within Psyr_0596 at 684.394 kb on - strand, within Psyr_0596 at 684.404 kb on - strand, within Psyr_0596 at 684.421 kb on - strand, within Psyr_0596 at 684.523 kb on + strand, within Psyr_0596 at 684.523 kb on + strand, within Psyr_0596 at 684.523 kb on + strand, within Psyr_0596 at 684.523 kb on + strand, within Psyr_0596 at 684.523 kb on + strand, within Psyr_0596 at 684.523 kb on + strand, within Psyr_0596 at 684.523 kb on + strand, within Psyr_0596 at 684.523 kb on + strand, within Psyr_0596 at 684.523 kb on + strand, within Psyr_0596 at 684.523 kb on + strand, within Psyr_0596 at 684.523 kb on + strand, within Psyr_0596 at 684.523 kb on + strand, within Psyr_0596 at 684.523 kb on + strand, within Psyr_0596 at 684.523 kb on + strand, within Psyr_0596 at 684.524 kb on - strand, within Psyr_0596 at 684.524 kb on - strand, within Psyr_0596 at 684.524 kb on - strand, within Psyr_0596 at 684.524 kb on - strand, within Psyr_0596 at 684.524 kb on - strand, within Psyr_0596 at 684.524 kb on - strand, within Psyr_0596 at 684.524 kb on - strand, within Psyr_0596 at 684.524 kb on - strand, within Psyr_0596 at 684.524 kb on - strand, within Psyr_0596 at 684.524 kb on - strand, within Psyr_0596 at 684.524 kb on - strand, within Psyr_0596 at 684.524 kb on - strand, within Psyr_0596 at 684.524 kb on - strand, within Psyr_0596 at 684.524 kb on - strand, within Psyr_0596 at 684.524 kb on - strand, within Psyr_0596 at 684.524 kb on - strand, within Psyr_0596 at 684.524 kb on - strand, within Psyr_0596 at 684.524 kb on - strand, within Psyr_0596 at 684.524 kb on - strand, within Psyr_0596 at 684.525 kb on + strand, within Psyr_0596 at 684.525 kb on + strand, within Psyr_0596 at 684.525 kb on + strand, within Psyr_0596 at 684.525 kb on + strand, within Psyr_0596 at 684.525 kb on + strand, within Psyr_0596 at 684.525 kb on + strand, within Psyr_0596 at 684.525 kb on + strand, within Psyr_0596 at 684.525 kb on + strand, within Psyr_0596 at 684.525 kb on + strand, within Psyr_0596 at 684.525 kb on + strand, within Psyr_0596 at 684.525 kb on + strand, within Psyr_0596 at 684.525 kb on + strand, within Psyr_0596 at 684.525 kb on + strand, within Psyr_0596 at 684.525 kb on + strand, within Psyr_0596 at 684.525 kb on + strand, within Psyr_0596 at 684.525 kb on + strand, within Psyr_0596 at 684.525 kb on + strand, within Psyr_0596 at 684.525 kb on + strand, within Psyr_0596 at 684.525 kb on + strand, within Psyr_0596 at 684.525 kb on + strand, within Psyr_0596 at 684.525 kb on + strand, within Psyr_0596 at 684.526 kb on - strand, within Psyr_0596 at 684.526 kb on - strand, within Psyr_0596 at 684.526 kb on - strand, within Psyr_0596 at 684.526 kb on - strand, within Psyr_0596 at 684.526 kb on - strand, within Psyr_0596 at 684.526 kb on - strand, within Psyr_0596 at 684.526 kb on - strand, within Psyr_0596 at 684.526 kb on - strand, within Psyr_0596 at 684.526 kb on - strand, within Psyr_0596 at 684.526 kb on - strand, within Psyr_0596 at 684.526 kb on - strand, within Psyr_0596 at 684.526 kb on - strand, within Psyr_0596 at 684.526 kb on - strand, within Psyr_0596 at 684.526 kb on - strand, within Psyr_0596 at 684.526 kb on - strand, within Psyr_0596 at 684.526 kb on - strand, within Psyr_0596 at 684.526 kb on - strand, within Psyr_0596 at 684.526 kb on - strand, within Psyr_0596 at 684.526 kb on - strand, within Psyr_0596 at 684.526 kb on - strand, within Psyr_0596 at 684.526 kb on - strand, within Psyr_0596 at 684.526 kb on - strand, within Psyr_0596 at 684.526 kb on - strand, within Psyr_0596 at 684.526 kb on - strand, within Psyr_0596 at 684.526 kb on - strand, within Psyr_0596 at 684.526 kb on - strand, within Psyr_0596 at 684.526 kb on - strand, within Psyr_0596 at 684.526 kb on - strand, within Psyr_0596 at 684.571 kb on - strand, within Psyr_0596 at 684.759 kb on + strand, within Psyr_0596 at 684.759 kb on + strand, within Psyr_0596 at 684.760 kb on - strand, within Psyr_0596 at 684.760 kb on - strand, within Psyr_0596
Per-strain Table
Position Strand Gene LocusTag Fraction apoplastic, sonication recovery; Green bean remove 682,092 - -0.2 682,964 - -0.2 682,967 + +1.5 682,968 - +0.0 683,031 + -2.0 683,032 - -1.4 683,032 - +2.5 683,032 - +0.6 683,123 + Psyr_0595 0.12 -1.0 683,124 - Psyr_0595 0.12 -1.6 683,373 + Psyr_0595 0.32 -2.4 683,374 - Psyr_0595 0.33 -1.5 683,374 - Psyr_0595 0.33 -1.8 683,742 + Psyr_0595 0.63 +0.6 683,743 - Psyr_0595 0.63 -2.6 683,743 - Psyr_0595 0.63 -1.0 683,996 + Psyr_0595 0.83 -2.2 684,106 - +2.3 684,142 - +1.5 684,142 - +1.4 684,142 - -2.6 684,390 + Psyr_0596 0.10 -0.4 684,390 + Psyr_0596 0.10 +0.7 684,390 + +1.8 684,390 + Psyr_0596 0.10 +1.8 684,390 + Psyr_0596 0.10 -1.6 684,391 - Psyr_0596 0.10 +1.3 684,391 - Psyr_0596 0.10 -0.9 684,391 - Psyr_0596 0.10 +1.0 684,393 + Psyr_0596 0.10 +1.8 684,394 - Psyr_0596 0.10 +1.2 684,404 - Psyr_0596 0.12 +0.3 684,421 - Psyr_0596 0.13 -0.5 684,523 + Psyr_0596 0.25 -0.5 684,523 + Psyr_0596 0.25 +0.8 684,523 + Psyr_0596 0.25 +0.9 684,523 + Psyr_0596 0.25 -0.2 684,523 + Psyr_0596 0.25 +0.6 684,523 + Psyr_0596 0.25 -1.6 684,523 + Psyr_0596 0.25 -1.5 684,523 + Psyr_0596 0.25 +1.5 684,523 + Psyr_0596 0.25 +0.8 684,523 + Psyr_0596 0.25 +1.2 684,523 + Psyr_0596 0.25 +0.8 684,523 + Psyr_0596 0.25 +1.7 684,523 + Psyr_0596 0.25 +1.6 684,523 + Psyr_0596 0.25 -2.6 684,524 - Psyr_0596 0.25 -1.0 684,524 - Psyr_0596 0.25 -1.8 684,524 - Psyr_0596 0.25 -0.2 684,524 - Psyr_0596 0.25 -0.7 684,524 - Psyr_0596 0.25 -0.2 684,524 - Psyr_0596 0.25 -1.6 684,524 - Psyr_0596 0.25 +1.5 684,524 - Psyr_0596 0.25 -1.4 684,524 - Psyr_0596 0.25 +0.7 684,524 - Psyr_0596 0.25 -2.8 684,524 - Psyr_0596 0.25 +2.1 684,524 - Psyr_0596 0.25 +0.8 684,524 - Psyr_0596 0.25 +0.8 684,524 - Psyr_0596 0.25 +2.5 684,524 - Psyr_0596 0.25 +2.4 684,524 - Psyr_0596 0.25 -1.0 684,524 - Psyr_0596 0.25 -0.5 684,524 - Psyr_0596 0.25 -3.0 684,524 - Psyr_0596 0.25 -2.3 684,525 + Psyr_0596 0.25 -0.6 684,525 + Psyr_0596 0.25 +2.3 684,525 + Psyr_0596 0.25 -1.5 684,525 + Psyr_0596 0.25 -0.2 684,525 + Psyr_0596 0.25 +1.8 684,525 + Psyr_0596 0.25 +2.4 684,525 + Psyr_0596 0.25 +0.4 684,525 + Psyr_0596 0.25 -3.1 684,525 + Psyr_0596 0.25 -2.3 684,525 + Psyr_0596 0.25 -0.4 684,525 + Psyr_0596 0.25 +1.0 684,525 + Psyr_0596 0.25 -2.0 684,525 + Psyr_0596 0.25 -1.6 684,525 + Psyr_0596 0.25 -0.6 684,525 + Psyr_0596 0.25 +0.9 684,525 + Psyr_0596 0.25 -0.2 684,525 + Psyr_0596 0.25 -0.8 684,525 + Psyr_0596 0.25 +1.5 684,525 + Psyr_0596 0.25 -1.9 684,525 + Psyr_0596 0.25 -2.7 684,525 + Psyr_0596 0.25 -0.8 684,526 - Psyr_0596 0.25 -0.8 684,526 - Psyr_0596 0.25 -2.3 684,526 - Psyr_0596 0.25 -1.0 684,526 - Psyr_0596 0.25 -2.7 684,526 - Psyr_0596 0.25 +0.1 684,526 - Psyr_0596 0.25 +0.1 684,526 - Psyr_0596 0.25 +1.4 684,526 - Psyr_0596 0.25 +0.3 684,526 - Psyr_0596 0.25 +0.8 684,526 - Psyr_0596 0.25 +0.0 684,526 - Psyr_0596 0.25 -1.0 684,526 - Psyr_0596 0.25 -0.1 684,526 - Psyr_0596 0.25 +0.2 684,526 - Psyr_0596 0.25 +2.4 684,526 - Psyr_0596 0.25 -1.0 684,526 - Psyr_0596 0.25 +0.5 684,526 - Psyr_0596 0.25 -0.2 684,526 - Psyr_0596 0.25 -1.4 684,526 - Psyr_0596 0.25 -0.2 684,526 - Psyr_0596 0.25 +0.2 684,526 - Psyr_0596 0.25 -0.8 684,526 - Psyr_0596 0.25 -0.3 684,526 - Psyr_0596 0.25 -0.3 684,526 - Psyr_0596 0.25 -1.2 684,526 - Psyr_0596 0.25 +0.6 684,526 - Psyr_0596 0.25 -0.3 684,526 - Psyr_0596 0.25 +1.7 684,526 - Psyr_0596 0.25 +2.0 684,571 - Psyr_0596 0.30 -1.4 684,759 + Psyr_0596 0.51 +1.2 684,759 + Psyr_0596 0.51 -0.8 684,760 - Psyr_0596 0.51 -3.1 684,760 - Psyr_0596 0.51 -2.7
Or see this region's nucleotide sequence