Experiment: apoplastic, sonication recovery; Green bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0531 and Psyr_0532 are separated by 30 nucleotides Psyr_0532 and Psyr_0533 are separated by 31 nucleotides Psyr_0533 and Psyr_0534 overlap by 11 nucleotides
Psyr_0531: Psyr_0531 - LmbE-like protein, at 599,742 to 601,151
_0531
Psyr_0532: Psyr_0532 - conserved hypothetical protein, at 601,182 to 602,138
_0532
Psyr_0533: Psyr_0533 - conserved hypothetical protein, at 602,170 to 602,943
_0533
Psyr_0534: Psyr_0534 - membrane protein, putative, at 602,933 to 604,102
_0534
Position (kb) 601
602
603 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 600.824 kb on - strand, within Psyr_0531 at 600.834 kb on + strand, within Psyr_0531 at 601.166 kb on + strand at 601.167 kb on - strand at 601.192 kb on + strand at 601.192 kb on + strand at 601.193 kb on - strand at 601.193 kb on - strand at 601.237 kb on - strand at 601.441 kb on - strand, within Psyr_0532 at 601.449 kb on + strand, within Psyr_0532 at 601.449 kb on + strand, within Psyr_0532 at 601.449 kb on + strand, within Psyr_0532 at 601.450 kb on - strand, within Psyr_0532 at 601.450 kb on - strand, within Psyr_0532 at 601.450 kb on - strand, within Psyr_0532 at 601.450 kb on - strand, within Psyr_0532 at 601.465 kb on - strand, within Psyr_0532 at 601.465 kb on - strand, within Psyr_0532 at 601.465 kb on - strand, within Psyr_0532 at 601.588 kb on - strand, within Psyr_0532 at 601.669 kb on - strand, within Psyr_0532 at 601.750 kb on - strand, within Psyr_0532 at 601.750 kb on - strand, within Psyr_0532 at 601.809 kb on + strand, within Psyr_0532 at 601.809 kb on + strand, within Psyr_0532 at 601.809 kb on + strand, within Psyr_0532 at 601.809 kb on + strand, within Psyr_0532 at 601.810 kb on - strand, within Psyr_0532 at 601.810 kb on - strand, within Psyr_0532 at 601.810 kb on - strand, within Psyr_0532 at 602.000 kb on + strand, within Psyr_0532 at 602.030 kb on + strand, within Psyr_0532 at 602.144 kb on + strand at 602.151 kb on - strand at 602.151 kb on - strand at 602.151 kb on - strand at 602.177 kb on + strand at 602.177 kb on + strand at 602.199 kb on + strand at 602.416 kb on + strand, within Psyr_0533 at 602.417 kb on - strand, within Psyr_0533 at 602.417 kb on - strand, within Psyr_0533 at 602.548 kb on + strand, within Psyr_0533 at 602.548 kb on + strand, within Psyr_0533 at 602.548 kb on + strand, within Psyr_0533 at 602.548 kb on + strand, within Psyr_0533 at 602.549 kb on - strand, within Psyr_0533 at 602.549 kb on - strand, within Psyr_0533 at 602.579 kb on - strand, within Psyr_0533 at 602.579 kb on - strand, within Psyr_0533 at 602.696 kb on - strand, within Psyr_0533 at 602.696 kb on - strand, within Psyr_0533 at 602.750 kb on + strand, within Psyr_0533 at 602.751 kb on - strand, within Psyr_0533 at 602.910 kb on - strand at 602.910 kb on - strand at 602.912 kb on + strand at 602.912 kb on + strand at 602.912 kb on + strand at 602.912 kb on + strand at 602.913 kb on - strand at 602.913 kb on - strand at 602.929 kb on - strand at 602.929 kb on - strand at 602.929 kb on - strand at 602.931 kb on + strand at 602.931 kb on + strand at 602.931 kb on + strand at 602.932 kb on - strand at 602.932 kb on - strand at 602.949 kb on + strand at 602.970 kb on + strand at 602.970 kb on + strand at 602.970 kb on + strand at 602.970 kb on + strand at 602.970 kb on + strand at 602.970 kb on + strand at 602.971 kb on - strand at 602.971 kb on - strand at 602.971 kb on - strand at 602.971 kb on - strand at 602.971 kb on - strand at 602.971 kb on - strand at 602.971 kb on - strand at 602.971 kb on - strand at 602.971 kb on - strand at 602.971 kb on - strand at 602.971 kb on - strand at 602.978 kb on + strand at 602.978 kb on + strand at 602.978 kb on + strand at 602.978 kb on + strand at 602.978 kb on + strand at 602.978 kb on + strand at 602.978 kb on + strand at 602.979 kb on - strand at 602.979 kb on - strand at 602.979 kb on - strand at 602.979 kb on - strand at 602.979 kb on - strand at 602.979 kb on - strand at 603.056 kb on + strand, within Psyr_0534 at 603.056 kb on + strand, within Psyr_0534 at 603.057 kb on - strand, within Psyr_0534 at 603.057 kb on - strand, within Psyr_0534 at 603.057 kb on - strand, within Psyr_0534 at 603.057 kb on - strand, within Psyr_0534
Per-strain Table
Position Strand Gene LocusTag Fraction apoplastic, sonication recovery; Green bean remove 600,824 - Psyr_0531 0.77 -2.0 600,834 + Psyr_0531 0.77 -0.1 601,166 + +2.5 601,167 - -0.5 601,192 + -2.0 601,192 + +1.9 601,193 - -2.0 601,193 - +2.7 601,237 - -1.0 601,441 - Psyr_0532 0.27 -1.5 601,449 + Psyr_0532 0.28 +2.2 601,449 + Psyr_0532 0.28 -2.7 601,449 + Psyr_0532 0.28 -2.0 601,450 - Psyr_0532 0.28 -2.7 601,450 - Psyr_0532 0.28 -2.4 601,450 - Psyr_0532 0.28 -0.1 601,450 - Psyr_0532 0.28 -0.5 601,465 - Psyr_0532 0.30 -3.0 601,465 - Psyr_0532 0.30 +0.3 601,465 - Psyr_0532 0.30 -0.3 601,588 - Psyr_0532 0.42 -2.1 601,669 - Psyr_0532 0.51 -0.3 601,750 - Psyr_0532 0.59 -1.5 601,750 - Psyr_0532 0.59 -0.1 601,809 + Psyr_0532 0.66 -2.3 601,809 + Psyr_0532 0.66 -1.0 601,809 + Psyr_0532 0.66 -2.7 601,809 + Psyr_0532 0.66 -1.1 601,810 - Psyr_0532 0.66 -2.6 601,810 - Psyr_0532 0.66 -1.3 601,810 - Psyr_0532 0.66 -0.7 602,000 + Psyr_0532 0.85 -0.5 602,030 + Psyr_0532 0.89 -3.5 602,144 + +2.3 602,151 - +1.9 602,151 - -2.5 602,151 - -1.1 602,177 + -1.6 602,177 + +0.5 602,199 + +0.5 602,416 + Psyr_0533 0.32 -0.5 602,417 - Psyr_0533 0.32 -2.0 602,417 - Psyr_0533 0.32 +0.1 602,548 + Psyr_0533 0.49 +1.3 602,548 + Psyr_0533 0.49 -0.7 602,548 + Psyr_0533 0.49 -0.7 602,548 + Psyr_0533 0.49 +1.2 602,549 - Psyr_0533 0.49 -0.5 602,549 - Psyr_0533 0.49 -2.9 602,579 - Psyr_0533 0.53 -2.1 602,579 - Psyr_0533 0.53 +1.1 602,696 - Psyr_0533 0.68 -1.7 602,696 - Psyr_0533 0.68 -3.6 602,750 + Psyr_0533 0.75 -1.3 602,751 - Psyr_0533 0.75 -1.0 602,910 - -3.3 602,910 - -1.8 602,912 + -1.5 602,912 + -1.7 602,912 + -1.2 602,912 + -0.7 602,913 - -2.2 602,913 - -1.1 602,929 - -1.8 602,929 - -0.7 602,929 - -1.1 602,931 + -0.5 602,931 + +0.9 602,931 + +1.2 602,932 - -2.7 602,932 - -1.6 602,949 + -2.0 602,970 + -0.7 602,970 + -1.8 602,970 + +2.6 602,970 + -1.1 602,970 + +0.9 602,970 + -1.3 602,971 - -0.1 602,971 - -2.3 602,971 - -1.8 602,971 - +1.7 602,971 - +0.0 602,971 - -0.5 602,971 - -0.7 602,971 - -3.0 602,971 - -2.1 602,971 - -0.1 602,971 - -2.3 602,978 + -0.3 602,978 + +1.4 602,978 + +0.1 602,978 + -1.6 602,978 + +4.0 602,978 + -2.0 602,978 + -1.0 602,979 - -2.1 602,979 - -1.6 602,979 - -2.4 602,979 - -1.7 602,979 - -1.6 602,979 - -3.1 603,056 + Psyr_0534 0.11 -1.1 603,056 + Psyr_0534 0.11 -3.8 603,057 - Psyr_0534 0.11 -2.7 603,057 - Psyr_0534 0.11 -2.2 603,057 - Psyr_0534 0.11 -0.2 603,057 - Psyr_0534 0.11 -2.4
Or see this region's nucleotide sequence