Experiment: apoplastic, sonication recovery; Green bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0394 and Psyr_0395 are separated by 66 nucleotides Psyr_0395 and Psyr_0396 are separated by 367 nucleotides
Psyr_0394: Psyr_0394 - Heat shock protein HslU, at 420,627 to 421,964
_0394
Psyr_0395: Psyr_0395 - HslV component of HslUV peptidase, Threonine peptidase, MEROPS family T01B, at 422,031 to 422,609
_0395
Psyr_0396: Psyr_0396 - Sporulation related protein, at 422,977 to 423,672
_0396
Position (kb) 422
423 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 421.175 kb on + strand, within Psyr_0394 at 421.175 kb on + strand, within Psyr_0394 at 421.175 kb on + strand, within Psyr_0394 at 421.176 kb on - strand, within Psyr_0394 at 421.680 kb on + strand, within Psyr_0394 at 421.681 kb on - strand, within Psyr_0394 at 421.696 kb on + strand, within Psyr_0394 at 421.697 kb on - strand, within Psyr_0394 at 421.825 kb on - strand, within Psyr_0394 at 421.825 kb on - strand, within Psyr_0394 at 421.919 kb on + strand at 421.920 kb on - strand at 421.985 kb on + strand at 422.446 kb on + strand, within Psyr_0395 at 422.447 kb on - strand, within Psyr_0395 at 422.458 kb on - strand, within Psyr_0395 at 422.458 kb on - strand, within Psyr_0395 at 422.458 kb on - strand, within Psyr_0395 at 422.528 kb on + strand, within Psyr_0395 at 422.628 kb on - strand at 422.665 kb on + strand at 422.666 kb on - strand at 422.666 kb on - strand at 422.687 kb on + strand at 422.842 kb on - strand at 422.842 kb on - strand at 422.842 kb on - strand at 422.901 kb on - strand at 422.901 kb on - strand at 422.932 kb on - strand at 423.013 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction apoplastic, sonication recovery; Green bean remove 421,175 + Psyr_0394 0.41 -0.1 421,175 + Psyr_0394 0.41 -0.1 421,175 + Psyr_0394 0.41 -1.1 421,176 - Psyr_0394 0.41 +3.6 421,680 + Psyr_0394 0.79 -0.9 421,681 - Psyr_0394 0.79 -0.9 421,696 + Psyr_0394 0.80 +0.5 421,697 - Psyr_0394 0.80 +3.0 421,825 - Psyr_0394 0.90 -3.0 421,825 - Psyr_0394 0.90 +0.5 421,919 + +0.5 421,920 - -1.9 421,985 + +0.5 422,446 + Psyr_0395 0.72 -2.5 422,447 - Psyr_0395 0.72 -1.5 422,458 - Psyr_0395 0.74 -0.2 422,458 - Psyr_0395 0.74 +0.4 422,458 - Psyr_0395 0.74 -0.4 422,528 + Psyr_0395 0.86 -1.5 422,628 - +2.9 422,665 + -1.8 422,666 - -2.1 422,666 - +1.8 422,687 + +0.9 422,842 - -1.5 422,842 - -0.7 422,842 - +3.1 422,901 - -2.5 422,901 - -0.4 422,932 - -0.3 423,013 - +0.9
Or see this region's nucleotide sequence