Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0095

Experiment: apoplastic, sonication recovery; Green bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	apoplastic, sonication recovery; Green bean
103,955	+				+1.6
103,955	+				-0.2
103,955	+				-0.7
103,955	+				-1.6
103,955	+				-2.0
103,955	+				-0.9
103,955	+				-0.2
103,955	+				-1.7
103,955	+				-0.2
103,955	+				-0.7
103,955	+				-0.4
103,955	+				-1.5
103,955	+				+0.1
103,955	+				-1.1
103,956	-				+0.6
103,956	-				-2.2
103,956	-				-0.9
103,956	-				+2.4
103,956	-				+1.1
103,956	-				-1.4
103,956	-				+1.5
103,956	-				+2.8
103,956	-				-1.5
103,956	-				+0.2
103,956	-				+1.1
103,956	-				+0.6
103,956	-				+0.7
103,956	-				+1.0
103,956	-				-1.0
104,019	+		Psyr_0094	0.17	+1.2
104,019	+		Psyr_0094	0.17	+2.6
104,019	+		Psyr_0094	0.17	-1.9
104,020	-		Psyr_0094	0.18	-1.1
104,020	-		Psyr_0094	0.18	-2.3
104,020	-		Psyr_0094	0.18	-1.1
104,072	-		Psyr_0094	0.25	-1.0
104,072	-		Psyr_0094	0.25	+1.4
104,072	-		Psyr_0094	0.25	+0.2
104,075	+		Psyr_0094	0.25	+1.9
104,075	+		Psyr_0094	0.25	+2.3
104,075	+		Psyr_0094	0.25	-0.3
104,075	+		Psyr_0094	0.25	-0.9
104,076	-		Psyr_0094	0.26	-1.1
104,076	-		Psyr_0094	0.26	-1.6
104,076	-		Psyr_0094	0.26	+1.0
104,130	+		Psyr_0094	0.33	-0.1
104,130	+		Psyr_0094	0.33	-1.8
104,131	-		Psyr_0094	0.33	-1.0
104,280	+		Psyr_0094	0.54	-1.3
104,281	-		Psyr_0094	0.55	+2.3
104,281	-		Psyr_0094	0.55	+0.1
104,281	-		Psyr_0094	0.55	-1.0
104,378	+		Psyr_0094	0.68	+1.0
104,378	+		Psyr_0094	0.68	+1.1
104,378	+		Psyr_0094	0.68	+1.0
104,378	+		Psyr_0094	0.68	-2.6
104,379	-		Psyr_0094	0.69	+2.6
104,379	-		Psyr_0094	0.69	+1.4
104,379	-		Psyr_0094	0.69	+2.0
104,401	+		Psyr_0094	0.72	+0.4
104,431	+		Psyr_0094	0.76	-0.1
104,432	-		Psyr_0094	0.76	-0.8
104,439	+		Psyr_0094	0.77	-1.0
104,439	+		Psyr_0094	0.77	-1.2
104,440	-		Psyr_0094	0.77	-1.6
104,473	+		Psyr_0094	0.82	-1.1
104,473	+		Psyr_0094	0.82	-0.9
104,473	+		Psyr_0094	0.82	+0.6
104,474	-		Psyr_0094	0.82	-2.0
104,474	-		Psyr_0094	0.82	-1.9
104,474	-		Psyr_0094	0.82	-0.7
104,474	-		Psyr_0094	0.82	+0.9
104,474	-		Psyr_0094	0.82	-1.4
104,562	+				-0.2
104,573	+				+0.0
104,573	+				+0.5
104,573	+				+0.8
104,574	-				-2.2
104,574	-				-0.1
104,574	-				+1.1
104,574	-				+0.3
104,574	-				-1.2
104,665	-				-0.4
104,684	+				+0.9
104,684	+				+0.1
104,685	-				+3.0
104,716	+				-0.1
104,716	+				-1.5
104,716	+				+1.3
104,716	+				-2.9
104,716	+				-0.4
104,716	+				-1.6
104,716	+				-0.5
104,717	-				-0.1
104,717	-				+0.0
104,822	+				-1.2
104,988	-				+3.4
105,012	+				+0.1
105,012	+				-1.2
105,012	+				+0.1
105,012	+				-3.0
105,013	-				-2.1
105,013	-				-1.6
105,013	-				+1.2
105,013	-				-0.9
105,013	-				+0.2
105,013	-				-3.0
105,013	-				+1.6
105,213	+		Psyr_0095	0.18	-0.9
105,213	+		Psyr_0095	0.18	-1.8
105,214	-		Psyr_0095	0.19	+1.0
105,283	-		Psyr_0095	0.23	+1.8
105,363	+		Psyr_0095	0.29	-0.9
105,363	+		Psyr_0095	0.29	+3.7
105,363	+		Psyr_0095	0.29	-1.5
105,363	+		Psyr_0095	0.29	+0.4
105,363	+		Psyr_0095	0.29	-1.9
105,364	-		Psyr_0095	0.29	+0.9
105,367	+		Psyr_0095	0.29	-0.1
105,367	+		Psyr_0095	0.29	-1.4
105,429	+		Psyr_0095	0.34	-0.9
105,429	+		Psyr_0095	0.34	-1.1
105,429	+		Psyr_0095	0.34	+0.7
105,429	+		Psyr_0095	0.34	-1.8
105,429	+		Psyr_0095	0.34	-1.2
105,430	-		Psyr_0095	0.34	-2.7
105,430	-		Psyr_0095	0.34	-1.6
105,430	-		Psyr_0095	0.34	-0.7
105,430	-		Psyr_0095	0.34	-0.4
105,430	-		Psyr_0095	0.34	+0.6
105,430	-		Psyr_0095	0.34	-2.6
105,430	-		Psyr_0095	0.34	-0.9
105,430	-		Psyr_0095	0.34	+0.3
105,430	-		Psyr_0095	0.34	+0.1
105,430	-		Psyr_0095	0.34	+2.5
105,430	-		Psyr_0095	0.34	-2.4
105,629	+		Psyr_0095	0.48	+2.3
105,629	+		Psyr_0095	0.48	+0.7
105,629	+		Psyr_0095	0.48	+1.9
105,630	-		Psyr_0095	0.48	-0.3
105,630	-		Psyr_0095	0.48	-3.9
105,630	-		Psyr_0095	0.48	-0.1
105,630	-		Psyr_0095	0.48	+2.0
105,630	-		Psyr_0095	0.48	+0.7
105,630	-		Psyr_0095	0.48	-0.5
105,630	-		Psyr_0095	0.48	+0.5
105,630	-		Psyr_0095	0.48	-3.4
105,630	-		Psyr_0095	0.48	-2.5
105,636	+		Psyr_0095	0.48	-2.6
105,636	+		Psyr_0095	0.48	+0.1
105,636	+		Psyr_0095	0.48	-0.1
105,636	+		Psyr_0095	0.48	+0.2
105,636	+		Psyr_0095	0.48	-1.4
105,636	+		Psyr_0095	0.48	-0.4
105,637	-		Psyr_0095	0.48	+1.7
105,662	-		Psyr_0095	0.50	-2.7
105,847	-		Psyr_0095	0.63	-0.9
105,847	-		Psyr_0095	0.63	+2.0
105,854	+		Psyr_0095	0.64	-2.3
105,854	+		Psyr_0095	0.64	-1.1
105,854	+		Psyr_0095	0.64	-1.6
105,855	-		Psyr_0095	0.64	+0.9
105,937	+		Psyr_0095	0.69	-0.0
105,937	+		Psyr_0095	0.69	+0.8
105,937	+		Psyr_0095	0.69	-0.7
106,039	+		Psyr_0095	0.77	-0.7
106,167	+		Psyr_0095	0.86	+0.2
106,167	+		Psyr_0095	0.86	-0.1
106,167	+		Psyr_0095	0.86	+0.9
106,194	+		Psyr_0095	0.88	-0.5
106,194	+		Psyr_0095	0.88	-0.6
106,195	-		Psyr_0095	0.88	-1.4
106,229	-				-2.9
106,266	+				-1.2
106,266	+				-1.7
106,266	+				-1.1
106,266	+				+0.5
106,266	+				-1.5
106,266	+				-0.2
106,266	+				-1.6
106,267	-				+1.2
106,267	-				-0.7
106,267	-				+0.2
106,267	-				-0.8
106,268	+				-0.7
106,268	+				-0.7
106,268	+				-1.9
106,268	+				+1.2
106,268	+				-2.1
106,268	+				-0.1
106,268	+				-0.4
106,268	+				-1.7
106,268	+				-0.4
106,269	-				+0.7
106,269	-				+1.8
106,269	-				+0.5
106,269	-				-1.5
106,269	-				-0.4
106,269	-				+0.3
106,269	-				+2.1
106,269	-				+1.3
106,269	-				+0.2
106,269	-				-0.1
106,269	-				-0.5
106,269	-				-0.5
106,269	-				-3.7
106,269	-				-3.1
106,269	-				-1.1
106,274	+				-0.1
106,274	+				-0.4
106,275	-				+1.1
106,275	-				-1.2
106,275	-				-0.6
106,328	+				-0.7
106,328	+				+2.5
106,328	+				+1.6
106,329	-				+1.2
106,362	+				+0.3
106,362	+				+0.9
106,362	+				-3.9
106,362	+				+1.8
106,362	+				-1.6
106,362	+				-1.2
106,363	-				-0.4
106,363	-				-1.9
106,363	-				-1.5
106,363	-				-1.2
106,363	-				-2.6
106,387	-				+2.0
106,581	+				+0.3
106,581	+				+0.3
106,581	+				+1.3
106,581	+				+1.2
106,581	+				+0.3
106,582	-				-1.0
106,582	-				-0.5
106,824	+		Psyr_0096	0.25	-1.2
106,825	-		Psyr_0096	0.25	+0.9
106,870	+		Psyr_0096	0.29	+3.9
106,870	+		Psyr_0096	0.29	+2.4
106,870	+		Psyr_0096	0.29	+0.6
106,870	+		Psyr_0096	0.29	-1.8
106,870	+		Psyr_0096	0.29	+4.1
106,871	-		Psyr_0096	0.30	-1.4
106,871	-		Psyr_0096	0.30	+1.7
106,871	-		Psyr_0096	0.30	-0.2
106,871	-		Psyr_0096	0.30	+1.0
106,900	-		Psyr_0096	0.33	+0.0
106,919	+		Psyr_0096	0.34	+0.9
106,919	+		Psyr_0096	0.34	+3.0
106,920	-		Psyr_0096	0.35	+1.8
106,920	-		Psyr_0096	0.35	+2.0
106,920	-		Psyr_0096	0.35	-0.6
106,982	+		Psyr_0096	0.41	+1.6
106,983	-		Psyr_0096	0.41	-1.0
106,983	-		Psyr_0096	0.41	+1.5
106,985	+		Psyr_0096	0.41	+3.3
107,046	+		Psyr_0096	0.47	+1.7
107,046	+		Psyr_0096	0.47	-3.0
107,047	-		Psyr_0096	0.47	+0.9
107,047	-		Psyr_0096	0.47	-1.0
107,047	-		Psyr_0096	0.47	-2.9
107,047	-		Psyr_0096	0.47	+1.1
107,047	-		Psyr_0096	0.47	+0.3
107,047	-		Psyr_0096	0.47	-2.9
107,050	-		Psyr_0096	0.48	+1.7
107,057	-		Psyr_0096	0.48	-1.4
107,184	+		Psyr_0096	0.61	+0.6
107,184	+		Psyr_0096	0.61	+0.7
107,185	-		Psyr_0096	0.61	+1.2
107,185	-		Psyr_0096	0.61	-1.8
107,191	+		Psyr_0096	0.62	+0.8
107,192	-		Psyr_0096	0.62	+0.9
107,192	-		Psyr_0096	0.62	+3.9
107,192	-		Psyr_0096	0.62	+0.0
107,196	-		Psyr_0096	0.63	-0.0
107,319	+		Psyr_0096	0.75	-0.4
107,319	+		Psyr_0096	0.75	-0.0
107,319	+		Psyr_0096	0.75	-1.9
107,319	+		Psyr_0096	0.75	-3.3
107,319	+		Psyr_0096	0.75	-1.2
107,319	+		Psyr_0096	0.75	+0.8
107,319	+		Psyr_0096	0.75	+1.5
107,319	+		Psyr_0096	0.75	-1.0
107,319	+		Psyr_0096	0.75	-0.1
107,319	+		Psyr_0096	0.75	+0.1
107,319	+		Psyr_0096	0.75	+1.1
107,319	+		Psyr_0096	0.75	-1.5
107,320	-		Psyr_0096	0.75	-0.6
107,320	-		Psyr_0096	0.75	+0.6
107,320	-		Psyr_0096	0.75	+0.3
107,320	-		Psyr_0096	0.75	-0.5
107,320	-		Psyr_0096	0.75	+2.6
107,320	-		Psyr_0096	0.75	-1.4
107,320	-		Psyr_0096	0.75	-2.3
107,320	-		Psyr_0096	0.75	-0.4