Experiment: apoplastic, sonication recovery; Green bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0069 and Psyr_0070 are separated by 199 nucleotides Psyr_0070 and Psyr_0071 overlap by 65 nucleotides
Psyr_0069: Psyr_0069 - Na+/Pi-cotransporter:Na/Pi cotransporter II-related protein, at 70,375 to 72,027
_0069
Psyr_0070: Psyr_0070 - hypothetical protein, at 72,227 to 73,060
_0070
Psyr_0071: Psyr_0071 - Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer, at 72,996 to 74,972
_0071
Position (kb) 72
73
74 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 71.294 kb on + strand, within Psyr_0069 at 71.294 kb on + strand, within Psyr_0069 at 71.294 kb on + strand, within Psyr_0069 at 71.294 kb on + strand, within Psyr_0069 at 71.294 kb on + strand, within Psyr_0069 at 71.295 kb on - strand, within Psyr_0069 at 71.938 kb on - strand at 71.943 kb on - strand at 71.970 kb on + strand at 71.970 kb on + strand at 72.055 kb on - strand at 72.103 kb on + strand at 72.103 kb on + strand at 72.104 kb on - strand at 72.104 kb on - strand at 72.111 kb on + strand at 72.111 kb on + strand at 72.112 kb on - strand at 72.114 kb on + strand at 72.114 kb on + strand at 72.114 kb on + strand at 72.114 kb on + strand at 72.115 kb on - strand at 72.115 kb on - strand at 72.115 kb on - strand at 72.115 kb on - strand at 72.115 kb on - strand at 72.123 kb on - strand at 72.162 kb on + strand at 72.162 kb on + strand at 72.163 kb on - strand at 72.175 kb on + strand at 72.186 kb on + strand at 72.243 kb on + strand at 72.262 kb on - strand at 72.262 kb on - strand at 72.320 kb on - strand, within Psyr_0070 at 72.393 kb on + strand, within Psyr_0070 at 72.917 kb on + strand, within Psyr_0070 at 73.271 kb on + strand, within Psyr_0071 at 73.271 kb on + strand, within Psyr_0071 at 73.271 kb on + strand, within Psyr_0071 at 73.271 kb on + strand, within Psyr_0071 at 73.271 kb on + strand, within Psyr_0071 at 73.271 kb on + strand, within Psyr_0071 at 73.272 kb on - strand, within Psyr_0071 at 73.272 kb on - strand, within Psyr_0071 at 73.272 kb on - strand, within Psyr_0071 at 73.272 kb on - strand, within Psyr_0071 at 73.914 kb on + strand, within Psyr_0071 at 73.953 kb on + strand, within Psyr_0071 at 73.953 kb on + strand, within Psyr_0071
Per-strain Table
Position Strand Gene LocusTag Fraction apoplastic, sonication recovery; Green bean remove 71,294 + Psyr_0069 0.56 -1.4 71,294 + Psyr_0069 0.56 -0.7 71,294 + Psyr_0069 0.56 +0.6 71,294 + Psyr_0069 0.56 -0.6 71,294 + Psyr_0069 0.56 -1.7 71,295 - Psyr_0069 0.56 -2.1 71,938 - -1.8 71,943 - +0.2 71,970 + -2.0 71,970 + -3.0 72,055 - -2.4 72,103 + -0.7 72,103 + +0.8 72,104 - -2.2 72,104 - -2.2 72,111 + -1.4 72,111 + +1.4 72,112 - -2.6 72,114 + +0.3 72,114 + -2.0 72,114 + +2.5 72,114 + -0.0 72,115 - +0.6 72,115 - +1.6 72,115 - +0.9 72,115 - +0.9 72,115 - +1.1 72,123 - +0.1 72,162 + -2.7 72,162 + -1.9 72,163 - +0.5 72,175 + +1.5 72,186 + +2.1 72,243 + +0.7 72,262 - -2.9 72,262 - -0.7 72,320 - Psyr_0070 0.11 -3.0 72,393 + Psyr_0070 0.20 -1.1 72,917 + Psyr_0070 0.83 -1.0 73,271 + Psyr_0071 0.14 +0.4 73,271 + Psyr_0071 0.14 -1.4 73,271 + Psyr_0071 0.14 -0.1 73,271 + Psyr_0071 0.14 +0.3 73,271 + Psyr_0071 0.14 +2.3 73,271 + Psyr_0071 0.14 +0.8 73,272 - Psyr_0071 0.14 -3.4 73,272 - Psyr_0071 0.14 +2.5 73,272 - Psyr_0071 0.14 +0.2 73,272 - Psyr_0071 0.14 -0.1 73,914 + Psyr_0071 0.46 -0.2 73,953 + Psyr_0071 0.48 +0.4 73,953 + Psyr_0071 0.48 -1.8
Or see this region's nucleotide sequence