Experiment: Manganese (II) chloride tetrahydrate 50 uM, aerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_10945 and IAI47_10950 are separated by 178 nucleotides IAI47_10950 and IAI47_10955 are separated by 4 nucleotides IAI47_10955 and IAI47_10960 are separated by 14 nucleotides
IAI47_10945: IAI47_10945 - vitamin B12 ABC transporter permease BtuC, at 2,310,757 to 2,311,740
_10945
IAI47_10950: IAI47_10950 - integration host factor subunit alpha, at 2,311,919 to 2,312,221
_10950
IAI47_10955: IAI47_10955 - phenylalanine--tRNA ligase subunit beta, at 2,312,226 to 2,314,613
_10955
IAI47_10960: IAI47_10960 - phenylalanine--tRNA ligase subunit alpha, at 2,314,628 to 2,315,611
_10960
Position (kb)
2312
2313
2314
2315 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2311.244 kb on + strand, within IAI47_10945 at 2311.245 kb on - strand, within IAI47_10945 at 2311.356 kb on + strand, within IAI47_10945 at 2311.356 kb on + strand, within IAI47_10945 at 2311.356 kb on + strand, within IAI47_10945 at 2311.517 kb on - strand, within IAI47_10945 at 2311.668 kb on + strand at 2311.668 kb on + strand at 2311.668 kb on + strand at 2311.669 kb on - strand at 2311.669 kb on - strand at 2311.669 kb on - strand at 2311.740 kb on + strand at 2311.740 kb on + strand at 2311.740 kb on + strand at 2311.741 kb on - strand at 2311.741 kb on - strand at 2311.741 kb on - strand at 2311.741 kb on - strand at 2311.741 kb on - strand at 2311.750 kb on + strand at 2311.750 kb on + strand at 2311.751 kb on - strand at 2311.751 kb on - strand at 2311.751 kb on - strand at 2311.776 kb on + strand at 2311.776 kb on + strand at 2311.776 kb on + strand at 2311.777 kb on - strand at 2311.838 kb on + strand at 2311.950 kb on - strand, within IAI47_10950
Per-strain Table
Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, aerobic remove 2,311,244 + IAI47_10945 0.49 -0.9 2,311,245 - IAI47_10945 0.50 +3.0 2,311,356 + IAI47_10945 0.61 -1.1 2,311,356 + IAI47_10945 0.61 -0.4 2,311,356 + IAI47_10945 0.61 +1.9 2,311,517 - IAI47_10945 0.77 -0.2 2,311,668 + +1.9 2,311,668 + -0.5 2,311,668 + -0.5 2,311,669 - +0.5 2,311,669 - -0.2 2,311,669 - -0.2 2,311,740 + +0.5 2,311,740 + +0.3 2,311,740 + -1.9 2,311,741 - -1.8 2,311,741 - -0.3 2,311,741 - -0.2 2,311,741 - -0.4 2,311,741 - -0.7 2,311,750 + -0.3 2,311,750 + +0.4 2,311,751 - +0.9 2,311,751 - +0.3 2,311,751 - -2.0 2,311,776 + +0.4 2,311,776 + -0.8 2,311,776 + +0.3 2,311,777 - +1.4 2,311,838 + -1.7 2,311,950 - IAI47_10950 0.10 -0.2
Or see this region's nucleotide sequence