Strain Fitness in Pantoea sp. MT58 around IAI47_10955

Experiment: Manganese (II) chloride tetrahydrate 50 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_10945 and IAI47_10950 are separated by 178 nucleotidesIAI47_10950 and IAI47_10955 are separated by 4 nucleotidesIAI47_10955 and IAI47_10960 are separated by 14 nucleotides IAI47_10945: IAI47_10945 - vitamin B12 ABC transporter permease BtuC, at 2,310,757 to 2,311,740 _10945 IAI47_10950: IAI47_10950 - integration host factor subunit alpha, at 2,311,919 to 2,312,221 _10950 IAI47_10955: IAI47_10955 - phenylalanine--tRNA ligase subunit beta, at 2,312,226 to 2,314,613 _10955 IAI47_10960: IAI47_10960 - phenylalanine--tRNA ligase subunit alpha, at 2,314,628 to 2,315,611 _10960 Position (kb) 2312 2313 2314 2315Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2311.244 kb on + strand, within IAI47_10945at 2311.245 kb on - strand, within IAI47_10945at 2311.356 kb on + strand, within IAI47_10945at 2311.356 kb on + strand, within IAI47_10945at 2311.356 kb on + strand, within IAI47_10945at 2311.517 kb on - strand, within IAI47_10945at 2311.668 kb on + strandat 2311.668 kb on + strandat 2311.668 kb on + strandat 2311.669 kb on - strandat 2311.669 kb on - strandat 2311.669 kb on - strandat 2311.740 kb on + strandat 2311.740 kb on + strandat 2311.740 kb on + strandat 2311.741 kb on - strandat 2311.741 kb on - strandat 2311.741 kb on - strandat 2311.741 kb on - strandat 2311.741 kb on - strandat 2311.750 kb on + strandat 2311.750 kb on + strandat 2311.751 kb on - strandat 2311.751 kb on - strandat 2311.751 kb on - strandat 2311.776 kb on + strandat 2311.776 kb on + strandat 2311.776 kb on + strandat 2311.777 kb on - strandat 2311.838 kb on + strandat 2311.950 kb on - strand, within IAI47_10950

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, aerobic
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2,311,244 + IAI47_10945 0.49 -0.9
2,311,245 - IAI47_10945 0.50 +3.0
2,311,356 + IAI47_10945 0.61 -1.1
2,311,356 + IAI47_10945 0.61 -0.4
2,311,356 + IAI47_10945 0.61 +1.9
2,311,517 - IAI47_10945 0.77 -0.2
2,311,668 + +1.9
2,311,668 + -0.5
2,311,668 + -0.5
2,311,669 - +0.5
2,311,669 - -0.2
2,311,669 - -0.2
2,311,740 + +0.5
2,311,740 + +0.3
2,311,740 + -1.9
2,311,741 - -1.8
2,311,741 - -0.3
2,311,741 - -0.2
2,311,741 - -0.4
2,311,741 - -0.7
2,311,750 + -0.3
2,311,750 + +0.4
2,311,751 - +0.9
2,311,751 - +0.3
2,311,751 - -2.0
2,311,776 + +0.4
2,311,776 + -0.8
2,311,776 + +0.3
2,311,777 - +1.4
2,311,838 + -1.7
2,311,950 - IAI47_10950 0.10 -0.2

Or see this region's nucleotide sequence