Experiment: L-Histidine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS23295 and CA265_RS23300 are separated by 63 nucleotides CA265_RS23300 and CA265_RS23305 are separated by 23 nucleotides CA265_RS23305 and CA265_RS23310 are separated by 82 nucleotides CA265_RS23310 and CA265_RS23315 are separated by 138 nucleotides
CA265_RS23295: CA265_RS23295 - oxidoreductase, at 5,695,018 to 5,696,472
_RS23295
CA265_RS23300: CA265_RS23300 - oxidoreductase, at 5,696,536 to 5,697,621
_RS23300
CA265_RS23305: CA265_RS23305 - hypothetical protein, at 5,697,645 to 5,697,878
_RS23305
CA265_RS23310: CA265_RS23310 - polyketide cyclase, at 5,697,961 to 5,698,410
_RS23310
CA265_RS23315: CA265_RS23315 - hypothetical protein, at 5,698,549 to 5,702,277
_RS23315
Position (kb) 5696
5697
5698 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 5695.592 kb on + strand, within CA265_RS23295 at 5695.593 kb on - strand, within CA265_RS23295 at 5695.593 kb on - strand, within CA265_RS23295 at 5695.712 kb on - strand, within CA265_RS23295 at 5695.712 kb on - strand, within CA265_RS23295 at 5695.721 kb on - strand, within CA265_RS23295 at 5695.721 kb on - strand, within CA265_RS23295 at 5695.721 kb on - strand, within CA265_RS23295 at 5695.724 kb on + strand, within CA265_RS23295 at 5695.728 kb on + strand, within CA265_RS23295 at 5695.766 kb on - strand, within CA265_RS23295 at 5695.802 kb on + strand, within CA265_RS23295 at 5695.802 kb on + strand, within CA265_RS23295 at 5695.837 kb on - strand, within CA265_RS23295 at 5695.877 kb on + strand, within CA265_RS23295 at 5695.878 kb on - strand, within CA265_RS23295 at 5695.897 kb on + strand, within CA265_RS23295 at 5695.932 kb on + strand, within CA265_RS23295 at 5696.064 kb on + strand, within CA265_RS23295 at 5696.197 kb on - strand, within CA265_RS23295 at 5696.286 kb on - strand, within CA265_RS23295 at 5696.322 kb on - strand, within CA265_RS23295 at 5696.322 kb on - strand, within CA265_RS23295 at 5696.514 kb on - strand at 5696.617 kb on - strand at 5696.617 kb on - strand at 5696.636 kb on + strand at 5696.708 kb on - strand, within CA265_RS23300 at 5696.708 kb on - strand, within CA265_RS23300 at 5696.708 kb on - strand, within CA265_RS23300 at 5696.763 kb on + strand, within CA265_RS23300 at 5696.789 kb on - strand, within CA265_RS23300 at 5696.789 kb on - strand, within CA265_RS23300 at 5696.852 kb on + strand, within CA265_RS23300 at 5696.852 kb on + strand, within CA265_RS23300 at 5696.853 kb on - strand, within CA265_RS23300 at 5696.865 kb on - strand, within CA265_RS23300 at 5696.865 kb on - strand, within CA265_RS23300 at 5696.865 kb on - strand, within CA265_RS23300 at 5696.909 kb on + strand, within CA265_RS23300 at 5696.910 kb on - strand, within CA265_RS23300 at 5696.915 kb on - strand, within CA265_RS23300 at 5696.916 kb on + strand, within CA265_RS23300 at 5696.916 kb on + strand, within CA265_RS23300 at 5697.033 kb on - strand, within CA265_RS23300 at 5697.063 kb on + strand, within CA265_RS23300 at 5697.068 kb on + strand, within CA265_RS23300 at 5697.069 kb on - strand, within CA265_RS23300 at 5697.086 kb on - strand, within CA265_RS23300 at 5697.086 kb on - strand, within CA265_RS23300 at 5697.126 kb on - strand, within CA265_RS23300 at 5697.126 kb on - strand, within CA265_RS23300 at 5697.178 kb on + strand, within CA265_RS23300 at 5697.181 kb on - strand, within CA265_RS23300 at 5697.184 kb on + strand, within CA265_RS23300 at 5697.184 kb on + strand, within CA265_RS23300 at 5697.229 kb on + strand, within CA265_RS23300 at 5697.230 kb on - strand, within CA265_RS23300 at 5697.230 kb on - strand, within CA265_RS23300 at 5697.363 kb on + strand, within CA265_RS23300 at 5697.364 kb on - strand, within CA265_RS23300 at 5697.386 kb on + strand, within CA265_RS23300 at 5697.447 kb on + strand, within CA265_RS23300 at 5697.511 kb on - strand, within CA265_RS23300 at 5697.527 kb on + strand at 5697.749 kb on + strand, within CA265_RS23305 at 5697.909 kb on - strand at 5697.909 kb on - strand at 5697.919 kb on + strand at 5697.974 kb on - strand at 5697.987 kb on - strand at 5698.041 kb on + strand, within CA265_RS23310 at 5698.076 kb on - strand, within CA265_RS23310 at 5698.132 kb on - strand, within CA265_RS23310 at 5698.147 kb on - strand, within CA265_RS23310 at 5698.231 kb on + strand, within CA265_RS23310 at 5698.357 kb on - strand, within CA265_RS23310 at 5698.378 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine (N) remove 5,695,592 + CA265_RS23295 0.39 -1.0 5,695,593 - CA265_RS23295 0.40 -1.1 5,695,593 - CA265_RS23295 0.40 +0.8 5,695,712 - CA265_RS23295 0.48 +0.8 5,695,712 - CA265_RS23295 0.48 +0.5 5,695,721 - CA265_RS23295 0.48 +0.4 5,695,721 - CA265_RS23295 0.48 -1.3 5,695,721 - CA265_RS23295 0.48 +0.2 5,695,724 + CA265_RS23295 0.49 -2.9 5,695,728 + CA265_RS23295 0.49 -0.6 5,695,766 - CA265_RS23295 0.51 +0.1 5,695,802 + CA265_RS23295 0.54 -1.0 5,695,802 + CA265_RS23295 0.54 -0.6 5,695,837 - CA265_RS23295 0.56 -1.1 5,695,877 + CA265_RS23295 0.59 -2.1 5,695,878 - CA265_RS23295 0.59 +1.3 5,695,897 + CA265_RS23295 0.60 -0.1 5,695,932 + CA265_RS23295 0.63 -0.7 5,696,064 + CA265_RS23295 0.72 -0.1 5,696,197 - CA265_RS23295 0.81 -0.1 5,696,286 - CA265_RS23295 0.87 +0.5 5,696,322 - CA265_RS23295 0.90 -0.3 5,696,322 - CA265_RS23295 0.90 -0.6 5,696,514 - -0.3 5,696,617 - -0.3 5,696,617 - -0.1 5,696,636 + +0.3 5,696,708 - CA265_RS23300 0.16 +0.2 5,696,708 - CA265_RS23300 0.16 +0.4 5,696,708 - CA265_RS23300 0.16 -0.4 5,696,763 + CA265_RS23300 0.21 -0.7 5,696,789 - CA265_RS23300 0.23 +0.1 5,696,789 - CA265_RS23300 0.23 -0.4 5,696,852 + CA265_RS23300 0.29 -2.0 5,696,852 + CA265_RS23300 0.29 -1.1 5,696,853 - CA265_RS23300 0.29 -0.6 5,696,865 - CA265_RS23300 0.30 +0.7 5,696,865 - CA265_RS23300 0.30 -1.1 5,696,865 - CA265_RS23300 0.30 +0.3 5,696,909 + CA265_RS23300 0.34 -0.9 5,696,910 - CA265_RS23300 0.34 -0.8 5,696,915 - CA265_RS23300 0.35 -1.5 5,696,916 + CA265_RS23300 0.35 +0.2 5,696,916 + CA265_RS23300 0.35 -0.9 5,697,033 - CA265_RS23300 0.46 -0.6 5,697,063 + CA265_RS23300 0.49 -1.8 5,697,068 + CA265_RS23300 0.49 +0.2 5,697,069 - CA265_RS23300 0.49 +1.5 5,697,086 - CA265_RS23300 0.51 -0.8 5,697,086 - CA265_RS23300 0.51 -0.3 5,697,126 - CA265_RS23300 0.54 +0.0 5,697,126 - CA265_RS23300 0.54 -0.8 5,697,178 + CA265_RS23300 0.59 -1.4 5,697,181 - CA265_RS23300 0.59 -0.1 5,697,184 + CA265_RS23300 0.60 +0.5 5,697,184 + CA265_RS23300 0.60 -0.8 5,697,229 + CA265_RS23300 0.64 -0.1 5,697,230 - CA265_RS23300 0.64 +0.0 5,697,230 - CA265_RS23300 0.64 +0.1 5,697,363 + CA265_RS23300 0.76 +0.5 5,697,364 - CA265_RS23300 0.76 -0.6 5,697,386 + CA265_RS23300 0.78 +0.1 5,697,447 + CA265_RS23300 0.84 +0.2 5,697,511 - CA265_RS23300 0.90 -0.2 5,697,527 + -0.1 5,697,749 + CA265_RS23305 0.44 +1.0 5,697,909 - +0.1 5,697,909 - +0.8 5,697,919 + -0.5 5,697,974 - -0.4 5,697,987 - +0.6 5,698,041 + CA265_RS23310 0.18 -0.3 5,698,076 - CA265_RS23310 0.26 -1.0 5,698,132 - CA265_RS23310 0.38 -0.5 5,698,147 - CA265_RS23310 0.41 -0.4 5,698,231 + CA265_RS23310 0.60 +0.5 5,698,357 - CA265_RS23310 0.88 -0.4 5,698,378 - +0.1
Or see this region's nucleotide sequence