Experiment: L-Histidine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS02285 and CA265_RS02290 are separated by 84 nucleotides CA265_RS02290 and CA265_RS02295 overlap by 25 nucleotides CA265_RS02295 and CA265_RS02300 are separated by 6 nucleotides CA265_RS02300 and CA265_RS02305 are separated by 92 nucleotides
CA265_RS02285: CA265_RS02285 - hypothetical protein, at 572,294 to 573,037
_RS02285
CA265_RS02290: CA265_RS02290 - alpha-ketoglutarate-dependent dioxygenase AlkB, at 573,122 to 573,730
_RS02290
CA265_RS02295: CA265_RS02295 - metal-binding protein, at 573,706 to 573,954
_RS02295
CA265_RS02300: CA265_RS02300 - cysteine methyltransferase, at 573,961 to 574,800
_RS02300
CA265_RS02305: CA265_RS02305 - hypothetical protein, at 574,893 to 575,429
_RS02305
Position (kb) 573
574 Strain fitness (log2 ratio) -2
-1
0
1 at 572.727 kb on + strand, within CA265_RS02285 at 572.739 kb on - strand, within CA265_RS02285 at 572.739 kb on - strand, within CA265_RS02285 at 572.849 kb on + strand, within CA265_RS02285 at 572.866 kb on + strand, within CA265_RS02285 at 572.879 kb on - strand, within CA265_RS02285 at 572.906 kb on - strand, within CA265_RS02285 at 572.973 kb on - strand at 572.973 kb on - strand at 573.058 kb on - strand at 573.063 kb on + strand at 573.063 kb on + strand at 573.084 kb on - strand at 573.128 kb on + strand at 573.128 kb on + strand at 573.139 kb on + strand at 573.164 kb on - strand at 573.251 kb on + strand, within CA265_RS02290 at 573.394 kb on - strand, within CA265_RS02290 at 573.400 kb on + strand, within CA265_RS02290 at 573.425 kb on - strand, within CA265_RS02290 at 573.496 kb on + strand, within CA265_RS02290 at 573.504 kb on + strand, within CA265_RS02290 at 573.510 kb on + strand, within CA265_RS02290 at 573.511 kb on - strand, within CA265_RS02290 at 573.539 kb on + strand, within CA265_RS02290 at 573.540 kb on - strand, within CA265_RS02290 at 573.556 kb on + strand, within CA265_RS02290 at 573.571 kb on + strand, within CA265_RS02290 at 573.605 kb on - strand, within CA265_RS02290 at 573.708 kb on - strand at 573.737 kb on + strand, within CA265_RS02295 at 573.738 kb on - strand, within CA265_RS02295 at 573.738 kb on - strand, within CA265_RS02295 at 573.738 kb on - strand, within CA265_RS02295 at 573.784 kb on + strand, within CA265_RS02295 at 573.850 kb on - strand, within CA265_RS02295 at 573.850 kb on - strand, within CA265_RS02295 at 574.051 kb on + strand, within CA265_RS02300 at 574.052 kb on - strand, within CA265_RS02300 at 574.052 kb on - strand, within CA265_RS02300 at 574.108 kb on + strand, within CA265_RS02300 at 574.126 kb on - strand, within CA265_RS02300 at 574.131 kb on + strand, within CA265_RS02300 at 574.157 kb on + strand, within CA265_RS02300 at 574.181 kb on - strand, within CA265_RS02300 at 574.181 kb on - strand, within CA265_RS02300 at 574.228 kb on + strand, within CA265_RS02300 at 574.240 kb on - strand, within CA265_RS02300 at 574.277 kb on + strand, within CA265_RS02300 at 574.278 kb on - strand, within CA265_RS02300 at 574.299 kb on + strand, within CA265_RS02300 at 574.306 kb on + strand, within CA265_RS02300 at 574.307 kb on - strand, within CA265_RS02300 at 574.605 kb on - strand, within CA265_RS02300 at 574.614 kb on + strand, within CA265_RS02300 at 574.619 kb on + strand, within CA265_RS02300 at 574.619 kb on + strand, within CA265_RS02300 at 574.641 kb on + strand, within CA265_RS02300 at 574.687 kb on + strand, within CA265_RS02300 at 574.714 kb on + strand, within CA265_RS02300 at 574.811 kb on - strand at 574.816 kb on - strand at 574.898 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine (N) remove 572,727 + CA265_RS02285 0.58 +0.2 572,739 - CA265_RS02285 0.60 +0.3 572,739 - CA265_RS02285 0.60 -0.3 572,849 + CA265_RS02285 0.75 +0.2 572,866 + CA265_RS02285 0.77 -1.4 572,879 - CA265_RS02285 0.79 +0.3 572,906 - CA265_RS02285 0.82 -0.1 572,973 - +1.2 572,973 - +0.1 573,058 - +1.3 573,063 + +0.4 573,063 + +1.3 573,084 - +0.5 573,128 + +0.1 573,128 + +0.7 573,139 + +0.0 573,164 - +0.6 573,251 + CA265_RS02290 0.21 +0.2 573,394 - CA265_RS02290 0.45 -0.1 573,400 + CA265_RS02290 0.46 +0.2 573,425 - CA265_RS02290 0.50 -0.2 573,496 + CA265_RS02290 0.61 +0.8 573,504 + CA265_RS02290 0.63 -0.1 573,510 + CA265_RS02290 0.64 -1.4 573,511 - CA265_RS02290 0.64 -0.0 573,539 + CA265_RS02290 0.68 -0.1 573,540 - CA265_RS02290 0.69 +0.3 573,556 + CA265_RS02290 0.71 +0.2 573,571 + CA265_RS02290 0.74 +1.5 573,605 - CA265_RS02290 0.79 +0.3 573,708 - -0.0 573,737 + CA265_RS02295 0.12 -1.2 573,738 - CA265_RS02295 0.13 +0.2 573,738 - CA265_RS02295 0.13 -0.1 573,738 - CA265_RS02295 0.13 -0.6 573,784 + CA265_RS02295 0.31 +0.0 573,850 - CA265_RS02295 0.58 -1.0 573,850 - CA265_RS02295 0.58 -0.2 574,051 + CA265_RS02300 0.11 -0.7 574,052 - CA265_RS02300 0.11 -0.3 574,052 - CA265_RS02300 0.11 +0.3 574,108 + CA265_RS02300 0.17 -0.4 574,126 - CA265_RS02300 0.20 +0.5 574,131 + CA265_RS02300 0.20 +0.9 574,157 + CA265_RS02300 0.23 +0.4 574,181 - CA265_RS02300 0.26 -1.7 574,181 - CA265_RS02300 0.26 -0.1 574,228 + CA265_RS02300 0.32 -0.4 574,240 - CA265_RS02300 0.33 -0.7 574,277 + CA265_RS02300 0.38 -1.0 574,278 - CA265_RS02300 0.38 -1.4 574,299 + CA265_RS02300 0.40 -0.2 574,306 + CA265_RS02300 0.41 +0.6 574,307 - CA265_RS02300 0.41 -0.1 574,605 - CA265_RS02300 0.77 -0.3 574,614 + CA265_RS02300 0.78 +0.3 574,619 + CA265_RS02300 0.78 +0.9 574,619 + CA265_RS02300 0.78 -0.8 574,641 + CA265_RS02300 0.81 -0.8 574,687 + CA265_RS02300 0.86 -2.6 574,714 + CA265_RS02300 0.90 +0.3 574,811 - -0.7 574,816 - +1.1 574,898 + -2.1
Or see this region's nucleotide sequence