Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS18380

Experiment: CDM1 without Pyridoxamine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	CDM1 without Pyridoxamine
1,909,598	-		BBR_RS18375	0.41	-1.1
1,909,598	-		BBR_RS18375	0.41	-3.1
1,909,598	-		BBR_RS18375	0.41	-2.1
1,909,629	-		BBR_RS18375	0.43	-2.0
1,909,639	-		BBR_RS18375	0.43	-1.4
1,909,670	+		BBR_RS18375	0.45	-2.3
1,909,670	+		BBR_RS18375	0.45	-3.4
1,909,678	-		BBR_RS18375	0.45	-0.3
1,909,693	-		BBR_RS18375	0.46	-2.1
1,909,698	-		BBR_RS18375	0.47	-3.0
1,909,712	+		BBR_RS18375	0.47	-3.5
1,909,722	-		BBR_RS18375	0.48	-2.9
1,909,773	+		BBR_RS18375	0.51	-2.9
1,909,795	-		BBR_RS18375	0.52	-0.5
1,909,795	-		BBR_RS18375	0.52	-1.5
1,909,795	-		BBR_RS18375	0.52	-1.7
1,909,851	-		BBR_RS18375	0.56	-3.0
1,909,897	+		BBR_RS18375	0.58	-1.5
1,909,904	+		BBR_RS18375	0.59	-4.1
1,909,908	-		BBR_RS18375	0.59	-2.0
1,910,017	-		BBR_RS18375	0.65	-1.2
1,910,036	+		BBR_RS18375	0.66	-1.9
1,910,039	-		BBR_RS18375	0.67	-2.9
1,910,044	-		BBR_RS18375	0.67	-3.1
1,910,044	-		BBR_RS18375	0.67	-2.7
1,910,044	-		BBR_RS18375	0.67	-3.6
1,910,044	-		BBR_RS18375	0.67	-2.6
1,910,044	-		BBR_RS18375	0.67	-3.4
1,910,197	-		BBR_RS18375	0.76	-3.4
1,910,197	-		BBR_RS18375	0.76	-1.9
1,910,197	-		BBR_RS18375	0.76	-1.3
1,910,197	-		BBR_RS18375	0.76	-1.0
1,910,203	-		BBR_RS18375	0.76	-0.9
1,910,228	-		BBR_RS18375	0.78	+0.0
1,910,248	-		BBR_RS18375	0.79	-0.1
1,910,259	-		BBR_RS18375	0.80	-0.4
1,910,267	+		BBR_RS18375	0.80	-2.5
1,910,267	+		BBR_RS18375	0.80	+0.8
1,910,341	+		BBR_RS18375	0.84	-3.0
1,910,343	+		BBR_RS18375	0.84	-2.0
1,910,345	+		BBR_RS18375	0.85	-3.9
1,910,345	+		BBR_RS18375	0.85	-3.6
1,910,351	-		BBR_RS18375	0.85	-1.2
1,910,355	+		BBR_RS18375	0.85	-1.4
1,910,407	-		BBR_RS18375	0.88	-0.3
1,910,440	-				-0.8
1,910,440	-				-2.1
1,910,444	+				-1.0
1,910,452	-				-1.1
1,910,452	-				-0.7
1,910,452	-				-2.9
1,910,452	-				-1.0
1,910,478	-				-1.1
1,910,549	+				-3.2
1,910,550	-				-3.1
1,910,550	-				-1.2
1,910,555	-				-1.6
1,910,577	-				-1.3
1,910,582	-				-1.4
1,910,587	+				-4.8
1,910,592	+				-1.9
1,910,593	-				-0.2
1,910,605	-				-0.3
1,910,668	-				-0.4
1,910,711	+				-4.1
1,910,714	-				-3.3
1,910,731	+				-4.7
1,910,765	+		BBR_RS18380	0.11	-2.9
1,910,773	-		BBR_RS18380	0.11	-0.0
1,910,773	-		BBR_RS18380	0.11	-1.2
1,910,773	-		BBR_RS18380	0.11	-3.4
1,910,774	-		BBR_RS18380	0.11	-0.7
1,910,776	+		BBR_RS18380	0.11	-3.4
1,910,776	+		BBR_RS18380	0.11	-1.9
1,910,776	+		BBR_RS18380	0.11	-2.4
1,910,776	+		BBR_RS18380	0.11	-0.7
1,910,776	+		BBR_RS18380	0.11	-3.9
1,910,776	+		BBR_RS18380	0.11	-3.6
1,910,776	+		BBR_RS18380	0.11	-0.9
1,910,776	+		BBR_RS18380	0.11	-1.8
1,910,784	-		BBR_RS18380	0.12	-0.4
1,910,784	-		BBR_RS18380	0.12	-0.5
1,910,784	-		BBR_RS18380	0.12	-1.2
1,910,784	-		BBR_RS18380	0.12	-1.0
1,910,784	-		BBR_RS18380	0.12	-1.3
1,910,784	-		BBR_RS18380	0.12	+0.0
1,910,784	-		BBR_RS18380	0.12	-2.0
1,910,784	-		BBR_RS18380	0.12	-2.7
1,910,784	-		BBR_RS18380	0.12	-0.5
1,910,784	-		BBR_RS18380	0.12	-0.1
1,910,784	-		BBR_RS18380	0.12	-0.8
1,910,784	-		BBR_RS18380	0.12	-0.9
1,910,784	-		BBR_RS18380	0.12	-0.9
1,910,794	-		BBR_RS18380	0.13	-3.7
1,910,794	-		BBR_RS18380	0.13	-3.6
1,910,806	-		BBR_RS18380	0.13	-0.6
1,910,808	-		BBR_RS18380	0.13	-0.7
1,910,808	-		BBR_RS18380	0.13	-0.4
1,910,873	+		BBR_RS18380	0.18	+1.7
1,910,925	+		BBR_RS18380	0.21	-3.9
1,910,925	+		BBR_RS18380	0.21	-2.1
1,910,933	-		BBR_RS18380	0.21	-0.8
1,910,933	-		BBR_RS18380	0.21	-1.8
1,910,933	-		BBR_RS18380	0.21	-1.0
1,910,933	-		BBR_RS18380	0.21	-0.6
1,910,933	-		BBR_RS18380	0.21	-0.7
1,910,933	-		BBR_RS18380	0.21	+0.1
1,910,933	-		BBR_RS18380	0.21	-0.6
1,910,956	-		BBR_RS18380	0.23	-0.4
1,910,970	-		BBR_RS18380	0.24	-1.8
1,910,976	-		BBR_RS18380	0.24	-0.8
1,910,991	-		BBR_RS18380	0.25	-0.4
1,910,991	-		BBR_RS18380	0.25	-0.4
1,910,991	-		BBR_RS18380	0.25	+0.1
1,910,991	-		BBR_RS18380	0.25	-2.0
1,911,014	-		BBR_RS18380	0.26	-0.4
1,911,027	+		BBR_RS18380	0.27	-3.6
1,911,028	-		BBR_RS18380	0.27	-0.8
1,911,035	-		BBR_RS18380	0.28	-0.5
1,911,035	-		BBR_RS18380	0.28	-0.1
1,911,035	-		BBR_RS18380	0.28	-2.7
1,911,037	+		BBR_RS18380	0.28	-2.3
1,911,045	-		BBR_RS18380	0.28	-1.7
1,911,045	-		BBR_RS18380	0.28	-1.5
1,911,045	-		BBR_RS18380	0.28	+0.5
1,911,045	-		BBR_RS18380	0.28	-1.0
1,911,045	-		BBR_RS18380	0.28	-0.9
1,911,045	-		BBR_RS18380	0.28	-0.6
1,911,071	-		BBR_RS18380	0.30	+0.1
1,911,109	-		BBR_RS18380	0.32	-1.6
1,911,143	-		BBR_RS18380	0.34	-3.4
1,911,159	-		BBR_RS18380	0.35	-0.1
1,911,192	+		BBR_RS18380	0.38	-2.6
1,911,200	-		BBR_RS18380	0.38	-3.3
1,911,200	-		BBR_RS18380	0.38	-0.7
1,911,200	-		BBR_RS18380	0.38	-2.4
1,911,200	-		BBR_RS18380	0.38	-0.7
1,911,211	-		BBR_RS18380	0.39	-2.6
1,911,222	-		BBR_RS18380	0.39	-1.4
1,911,225	-		BBR_RS18380	0.40	-0.1
1,911,225	-		BBR_RS18380	0.40	+0.3
1,911,229	+		BBR_RS18380	0.40	-1.6
1,911,230	-		BBR_RS18380	0.40	-0.5
1,911,258	+		BBR_RS18380	0.42	-2.8
1,911,294	+		BBR_RS18380	0.44	-3.4
1,911,305	+		BBR_RS18380	0.45	-1.6
1,911,312	+		BBR_RS18380	0.45	-3.3
1,911,354	-		BBR_RS18380	0.48	-0.5
1,911,356	-		BBR_RS18380	0.48	-0.3
1,911,359	-		BBR_RS18380	0.48	-0.9
1,911,364	-		BBR_RS18380	0.48	-0.5
1,911,364	-		BBR_RS18380	0.48	-1.2
1,911,366	+		BBR_RS18380	0.48	-1.8
1,911,419	+		BBR_RS18380	0.52	-1.0
1,911,444	-		BBR_RS18380	0.53	-2.3
1,911,444	-		BBR_RS18380	0.53	-0.7
1,911,444	-		BBR_RS18380	0.53	-0.0
1,911,452	-		BBR_RS18380	0.54	-2.9
1,911,462	-		BBR_RS18380	0.54	-2.7
1,911,480	+		BBR_RS18380	0.56	-1.7
1,911,517	-		BBR_RS18380	0.58	-0.2
1,911,551	+		BBR_RS18380	0.60	-2.3
1,911,561	-		BBR_RS18380	0.61	-0.5
1,911,562	+		BBR_RS18380	0.61	-1.5
1,911,575	+		BBR_RS18380	0.62	-4.3
1,911,593	-		BBR_RS18380	0.63	-1.2
1,911,593	-		BBR_RS18380	0.63	-1.4
1,911,628	-		BBR_RS18380	0.65	-1.2
1,911,628	-		BBR_RS18380	0.65	-1.5
1,911,653	-		BBR_RS18380	0.66	-4.2
1,911,731	+		BBR_RS18380	0.71	-3.1
1,911,732	-		BBR_RS18380	0.71	-1.9
1,911,744	-		BBR_RS18380	0.72	-1.9
1,911,772	+		BBR_RS18380	0.74	-2.8
1,911,780	-		BBR_RS18380	0.74	-2.8
1,911,784	+		BBR_RS18380	0.75	-2.8
1,911,792	+		BBR_RS18380	0.75	-3.2
1,911,804	+		BBR_RS18380	0.76	-2.5
1,911,810	-		BBR_RS18380	0.76	-1.8
1,911,810	-		BBR_RS18380	0.76	-1.7
1,911,812	-		BBR_RS18380	0.76	-2.1
1,911,818	+		BBR_RS18380	0.77	-1.7
1,911,823	+		BBR_RS18380	0.77	-3.4
1,911,826	-		BBR_RS18380	0.77	+0.1
1,911,832	-		BBR_RS18380	0.78	-0.9
1,911,832	-		BBR_RS18380	0.78	-1.8
1,911,832	-		BBR_RS18380	0.78	+0.6
1,911,832	-		BBR_RS18380	0.78	-0.5
1,911,839	-		BBR_RS18380	0.78	-1.4
1,911,869	+		BBR_RS18380	0.80	-3.6
1,911,998	+		BBR_RS18380	0.88	-3.1
1,911,998	+		BBR_RS18380	0.88	-2.7
1,912,013	+		BBR_RS18380	0.89	-3.4
1,912,028	-				-0.6
1,912,028	-				-2.5
1,912,028	-				-1.0
1,912,049	-				-2.1
1,912,049	-				-4.2
1,912,065	+				-0.7
1,912,065	-				-2.4
1,912,065	-				-3.0
1,912,087	-				-2.2
1,912,108	-				-1.6
1,912,126	+				-0.9
1,912,134	-				-2.8
1,912,134	-				+0.2
1,912,134	-				-1.4
1,912,134	-				-0.8
1,912,219	+				-1.6
1,912,219	+				+0.1
1,912,219	+				-2.5
1,912,219	+				-0.5
1,912,227	-				-3.7
1,912,227	-				-1.0
1,912,229	+				-0.2
1,912,237	-				-2.6
1,912,238	-				-0.4
1,912,238	-				-1.4
1,912,266	-				-0.9
1,912,307	+				-1.6
1,912,307	+				-0.1
1,912,308	-				-1.9
1,912,308	-				-0.2
1,912,339	+				-3.7
1,912,347	-				-0.7
1,912,349	-				+0.6
1,912,349	-				-0.2
1,912,364	+				-0.5
1,912,364	-				-0.5
1,912,371	+				-0.7
1,912,393	-				-0.6
1,912,401	+				+0.3
1,912,421	+				-1.8
1,912,438	+				-0.2
1,912,457	+				+1.6
1,912,462	+				-0.9
1,912,464	+				-0.8
1,912,472	-				-1.1
1,912,499	+				-0.6
1,912,510	-				-1.1
1,912,533	+				-0.8
1,912,573	+		BBR_RS18385	0.12	-1.2
1,912,622	-		BBR_RS18385	0.15	-1.2
1,912,650	+		BBR_RS18385	0.17	+0.8
1,912,722	+		BBR_RS18385	0.21	-1.5
1,912,788	+		BBR_RS18385	0.25	-0.3
1,912,831	+		BBR_RS18385	0.27	-0.6
1,912,831	+		BBR_RS18385	0.27	+0.5
1,912,831	+		BBR_RS18385	0.27	-1.9
1,912,851	-		BBR_RS18385	0.29	-2.0
1,912,851	-		BBR_RS18385	0.29	-2.7
1,912,853	+		BBR_RS18385	0.29	-0.5
1,912,872	+		BBR_RS18385	0.30	+0.1
1,912,872	+		BBR_RS18385	0.30	+0.5
1,912,880	-		BBR_RS18385	0.30	-2.1
1,912,880	-		BBR_RS18385	0.30	-1.7
1,912,881	+		BBR_RS18385	0.30	-0.3
1,912,881	+		BBR_RS18385	0.30	-2.7
1,912,907	+		BBR_RS18385	0.32	-0.4
1,912,907	+		BBR_RS18385	0.32	-0.7
1,912,907	+		BBR_RS18385	0.32	-0.4
1,912,907	+		BBR_RS18385	0.32	+0.2
1,912,907	+		BBR_RS18385	0.32	-0.8
1,912,907	+		BBR_RS18385	0.32	-1.2
1,912,907	+		BBR_RS18385	0.32	+0.4
1,912,907	+		BBR_RS18385	0.32	-0.3
1,912,915	-		BBR_RS18385	0.32	-1.1
1,912,915	-		BBR_RS18385	0.32	-0.1
1,912,915	-		BBR_RS18385	0.32	-0.9
1,912,944	+		BBR_RS18385	0.34	+0.1
1,912,944	+		BBR_RS18385	0.34	-0.0
1,913,000	+		BBR_RS18385	0.38	+1.3
1,913,007	-		BBR_RS18385	0.38	-0.8
1,913,040	-		BBR_RS18385	0.40	-0.1
1,913,064	+		BBR_RS18385	0.41	-1.2
1,913,067	+		BBR_RS18385	0.42	+0.3
1,913,070	+		BBR_RS18385	0.42	+0.8
1,913,070	+		BBR_RS18385	0.42	-0.7
1,913,073	-		BBR_RS18385	0.42	-2.4
1,913,075	+		BBR_RS18385	0.42	-0.4
1,913,078	-		BBR_RS18385	0.42	-0.1
1,913,088	+		BBR_RS18385	0.43	+0.6
1,913,090	-		BBR_RS18385	0.43	+0.3
1,913,095	+		BBR_RS18385	0.43	+1.3
1,913,128	-		BBR_RS18385	0.45	-0.8