Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS13390

Experiment: CDM1 without Pyridoxamine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS13385 and BBR_RS13390 overlap by 4 nucleotidesBBR_RS13390 and BBR_RS13400 are separated by 337 nucleotides BBR_RS13385: BBR_RS13385 - type VI secretion protein ImpB, at 776,777 to 778,363 _RS13385 BBR_RS13390: BBR_RS13390 - hypothetical protein, at 778,360 to 778,578 _RS13390 BBR_RS13400: BBR_RS13400 - DNA-deoxyinosine glycosylase, at 778,916 to 779,470 _RS13400 Position (kb) 778 779Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 777.379 kb on - strand, within BBR_RS13385at 777.410 kb on + strand, within BBR_RS13385at 777.414 kb on + strand, within BBR_RS13385at 777.422 kb on - strand, within BBR_RS13385at 777.457 kb on + strand, within BBR_RS13385at 777.465 kb on - strand, within BBR_RS13385at 777.465 kb on - strand, within BBR_RS13385at 777.465 kb on - strand, within BBR_RS13385at 777.548 kb on - strand, within BBR_RS13385at 777.581 kb on + strand, within BBR_RS13385at 777.647 kb on + strand, within BBR_RS13385at 777.650 kb on - strand, within BBR_RS13385at 777.654 kb on + strand, within BBR_RS13385at 777.655 kb on - strand, within BBR_RS13385at 777.655 kb on - strand, within BBR_RS13385at 777.660 kb on - strand, within BBR_RS13385at 777.662 kb on - strand, within BBR_RS13385at 777.687 kb on + strand, within BBR_RS13385at 777.698 kb on + strand, within BBR_RS13385at 777.717 kb on + strand, within BBR_RS13385at 777.717 kb on + strand, within BBR_RS13385at 777.730 kb on + strand, within BBR_RS13385at 777.732 kb on - strand, within BBR_RS13385at 777.735 kb on + strand, within BBR_RS13385at 777.735 kb on + strand, within BBR_RS13385at 777.828 kb on + strand, within BBR_RS13385at 777.861 kb on + strand, within BBR_RS13385at 777.869 kb on - strand, within BBR_RS13385at 777.885 kb on - strand, within BBR_RS13385at 777.966 kb on + strand, within BBR_RS13385at 777.974 kb on + strand, within BBR_RS13385at 777.974 kb on + strand, within BBR_RS13385at 777.982 kb on - strand, within BBR_RS13385at 778.050 kb on - strand, within BBR_RS13385at 778.065 kb on - strand, within BBR_RS13385at 778.097 kb on - strand, within BBR_RS13385at 778.133 kb on - strand, within BBR_RS13385at 778.133 kb on - strand, within BBR_RS13385at 778.152 kb on + strand, within BBR_RS13385at 778.171 kb on + strand, within BBR_RS13385at 778.200 kb on + strand, within BBR_RS13385at 778.200 kb on + strand, within BBR_RS13385at 778.295 kb on + strandat 778.303 kb on - strandat 778.327 kb on + strandat 778.470 kb on + strand, within BBR_RS13390at 778.470 kb on + strand, within BBR_RS13390at 778.506 kb on - strand, within BBR_RS13390at 778.542 kb on + strand, within BBR_RS13390at 778.549 kb on + strand, within BBR_RS13390at 778.550 kb on - strand, within BBR_RS13390at 778.550 kb on - strand, within BBR_RS13390at 778.557 kb on - strandat 778.615 kb on + strandat 778.697 kb on + strandat 778.733 kb on - strandat 778.761 kb on - strandat 778.761 kb on - strandat 778.769 kb on + strandat 778.785 kb on + strandat 778.793 kb on - strandat 778.793 kb on - strandat 778.800 kb on - strandat 778.829 kb on - strandat 778.829 kb on - strandat 778.874 kb on + strandat 778.906 kb on - strandat 779.022 kb on - strand, within BBR_RS13400at 779.032 kb on + strand, within BBR_RS13400at 779.032 kb on + strand, within BBR_RS13400at 779.040 kb on - strand, within BBR_RS13400at 779.085 kb on + strand, within BBR_RS13400at 779.120 kb on + strand, within BBR_RS13400at 779.120 kb on - strand, within BBR_RS13400at 779.134 kb on - strand, within BBR_RS13400at 779.134 kb on - strand, within BBR_RS13400at 779.172 kb on + strand, within BBR_RS13400at 779.236 kb on - strand, within BBR_RS13400at 779.251 kb on + strand, within BBR_RS13400at 779.266 kb on - strand, within BBR_RS13400at 779.294 kb on + strand, within BBR_RS13400at 779.389 kb on - strand, within BBR_RS13400at 779.415 kb on + strandat 779.425 kb on + strandat 779.431 kb on - strandat 779.440 kb on + strandat 779.440 kb on + strandat 779.448 kb on - strandat 779.448 kb on - strandat 779.453 kb on + strandat 779.518 kb on + strandat 779.528 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction CDM1 without Pyridoxamine
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777,379 - BBR_RS13385 0.38 -1.7
777,410 + BBR_RS13385 0.40 -0.9
777,414 + BBR_RS13385 0.40 -1.3
777,422 - BBR_RS13385 0.41 -0.3
777,457 + BBR_RS13385 0.43 +0.1
777,465 - BBR_RS13385 0.43 -0.7
777,465 - BBR_RS13385 0.43 -0.1
777,465 - BBR_RS13385 0.43 -2.1
777,548 - BBR_RS13385 0.49 -0.5
777,581 + BBR_RS13385 0.51 -1.6
777,647 + BBR_RS13385 0.55 -1.1
777,650 - BBR_RS13385 0.55 -1.9
777,654 + BBR_RS13385 0.55 -0.6
777,655 - BBR_RS13385 0.55 +0.1
777,655 - BBR_RS13385 0.55 -0.9
777,660 - BBR_RS13385 0.56 -0.3
777,662 - BBR_RS13385 0.56 -1.5
777,687 + BBR_RS13385 0.57 -0.2
777,698 + BBR_RS13385 0.58 -0.7
777,717 + BBR_RS13385 0.59 +2.3
777,717 + BBR_RS13385 0.59 +0.7
777,730 + BBR_RS13385 0.60 +0.3
777,732 - BBR_RS13385 0.60 -1.0
777,735 + BBR_RS13385 0.60 +0.2
777,735 + BBR_RS13385 0.60 -0.9
777,828 + BBR_RS13385 0.66 -0.4
777,861 + BBR_RS13385 0.68 -1.0
777,869 - BBR_RS13385 0.69 -1.0
777,885 - BBR_RS13385 0.70 -0.7
777,966 + BBR_RS13385 0.75 -0.3
777,974 + BBR_RS13385 0.75 -1.4
777,974 + BBR_RS13385 0.75 -0.1
777,982 - BBR_RS13385 0.76 -1.1
778,050 - BBR_RS13385 0.80 -0.2
778,065 - BBR_RS13385 0.81 -0.5
778,097 - BBR_RS13385 0.83 -3.9
778,133 - BBR_RS13385 0.85 -0.1
778,133 - BBR_RS13385 0.85 -2.2
778,152 + BBR_RS13385 0.87 -1.2
778,171 + BBR_RS13385 0.88 -1.2
778,200 + BBR_RS13385 0.90 +0.2
778,200 + BBR_RS13385 0.90 -0.6
778,295 + +0.4
778,303 - -2.0
778,327 + -2.8
778,470 + BBR_RS13390 0.50 -3.1
778,470 + BBR_RS13390 0.50 -3.2
778,506 - BBR_RS13390 0.67 -1.8
778,542 + BBR_RS13390 0.83 -3.4
778,549 + BBR_RS13390 0.86 -1.2
778,550 - BBR_RS13390 0.87 -0.8
778,550 - BBR_RS13390 0.87 -1.9
778,557 - -1.3
778,615 + +0.3
778,697 + -0.7
778,733 - +0.4
778,761 - +0.5
778,761 - +0.7
778,769 + -0.5
778,785 + -0.9
778,793 - +0.2
778,793 - +0.8
778,800 - -0.7
778,829 - -0.1
778,829 - -0.0
778,874 + -1.3
778,906 - -3.0
779,022 - BBR_RS13400 0.19 +0.1
779,032 + BBR_RS13400 0.21 -0.6
779,032 + BBR_RS13400 0.21 +0.6
779,040 - BBR_RS13400 0.22 -0.2
779,085 + BBR_RS13400 0.30 -0.7
779,120 + BBR_RS13400 0.37 -0.1
779,120 - BBR_RS13400 0.37 -1.3
779,134 - BBR_RS13400 0.39 -0.1
779,134 - BBR_RS13400 0.39 -0.5
779,172 + BBR_RS13400 0.46 -0.5
779,236 - BBR_RS13400 0.58 -1.1
779,251 + BBR_RS13400 0.60 -1.1
779,266 - BBR_RS13400 0.63 +1.5
779,294 + BBR_RS13400 0.68 -0.4
779,389 - BBR_RS13400 0.85 -0.9
779,415 + -0.8
779,425 + +0.0
779,431 - -1.2
779,440 + -0.5
779,440 + +0.9
779,448 - -1.5
779,448 - +0.9
779,453 + -0.7
779,518 + +1.4
779,528 - +0.3

Or see this region's nucleotide sequence