Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS12680

Experiment: CDM1 without Pyridoxamine

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBBR_RS12670 and BBR_RS12675 are separated by 63 nucleotidesBBR_RS12675 and BBR_RS12680 are separated by 6 nucleotidesBBR_RS12680 and BBR_RS12685 are separated by 152 nucleotidesBBR_RS12685 and BBR_RS12690 are separated by 2 nucleotides BBR_RS12670: BBR_RS12670 - hypothetical protein, at 599,138 to 599,587 _RS12670 BBR_RS12675: BBR_RS12675 - transposase, at 599,651 to 600,457 _RS12675 BBR_RS12680: BBR_RS12680 - hypothetical protein, at 600,464 to 600,736 _RS12680 BBR_RS12685: BBR_RS12685 - ATPase AAA, at 600,889 to 601,674 _RS12685 BBR_RS12690: BBR_RS12690 - IS21 family transposase, at 601,677 to 603,158 _RS12690 Position (kb) 600 601Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 599.478 kb on + strand, within BBR_RS12670at 599.481 kb on + strand, within BBR_RS12670at 599.483 kb on + strand, within BBR_RS12670at 599.483 kb on + strand, within BBR_RS12670at 599.489 kb on - strand, within BBR_RS12670at 599.532 kb on + strand, within BBR_RS12670at 599.532 kb on + strand, within BBR_RS12670at 599.532 kb on + strand, within BBR_RS12670at 599.540 kb on - strand, within BBR_RS12670at 599.540 kb on - strand, within BBR_RS12670at 599.540 kb on - strand, within BBR_RS12670at 599.540 kb on - strand, within BBR_RS12670at 599.598 kb on + strandat 599.598 kb on + strandat 599.610 kb on - strandat 599.613 kb on + strandat 599.613 kb on + strandat 599.648 kb on + strandat 599.648 kb on + strandat 599.648 kb on + strandat 599.680 kb on + strandat 599.680 kb on + strandat 599.680 kb on + strandat 599.680 kb on + strandat 599.680 kb on + strandat 599.688 kb on - strandat 599.727 kb on - strandat 599.745 kb on - strand, within BBR_RS12675at 599.750 kb on - strand, within BBR_RS12675at 599.769 kb on + strand, within BBR_RS12675at 599.841 kb on - strand, within BBR_RS12675at 599.885 kb on + strand, within BBR_RS12675at 599.965 kb on + strand, within BBR_RS12675at 599.965 kb on + strand, within BBR_RS12675at 599.972 kb on + strand, within BBR_RS12675at 599.973 kb on - strand, within BBR_RS12675at 599.973 kb on - strand, within BBR_RS12675at 600.010 kb on - strand, within BBR_RS12675at 600.011 kb on - strand, within BBR_RS12675at 600.024 kb on + strand, within BBR_RS12675at 600.024 kb on + strand, within BBR_RS12675at 600.024 kb on + strand, within BBR_RS12675at 600.024 kb on + strand, within BBR_RS12675at 600.024 kb on + strand, within BBR_RS12675at 600.024 kb on + strand, within BBR_RS12675at 600.032 kb on - strand, within BBR_RS12675at 600.032 kb on - strand, within BBR_RS12675at 600.051 kb on - strand, within BBR_RS12675at 600.056 kb on + strand, within BBR_RS12675at 600.058 kb on + strand, within BBR_RS12675at 600.066 kb on + strand, within BBR_RS12675at 600.071 kb on + strand, within BBR_RS12675at 600.071 kb on + strand, within BBR_RS12675at 600.076 kb on + strand, within BBR_RS12675at 600.079 kb on - strand, within BBR_RS12675at 600.079 kb on - strand, within BBR_RS12675at 600.079 kb on - strand, within BBR_RS12675at 600.079 kb on - strand, within BBR_RS12675at 600.081 kb on - strand, within BBR_RS12675at 600.081 kb on - strand, within BBR_RS12675at 600.110 kb on - strand, within BBR_RS12675at 600.127 kb on + strand, within BBR_RS12675at 600.172 kb on + strand, within BBR_RS12675at 600.205 kb on + strand, within BBR_RS12675at 600.213 kb on - strand, within BBR_RS12675at 600.213 kb on - strand, within BBR_RS12675at 600.237 kb on - strand, within BBR_RS12675at 600.250 kb on + strand, within BBR_RS12675at 600.250 kb on + strand, within BBR_RS12675at 600.255 kb on + strand, within BBR_RS12675at 600.256 kb on - strand, within BBR_RS12675at 600.256 kb on - strand, within BBR_RS12675at 600.256 kb on - strand, within BBR_RS12675at 600.260 kb on + strand, within BBR_RS12675at 600.263 kb on - strand, within BBR_RS12675at 600.263 kb on - strand, within BBR_RS12675at 600.268 kb on - strand, within BBR_RS12675at 600.268 kb on - strand, within BBR_RS12675at 600.268 kb on - strand, within BBR_RS12675at 600.284 kb on + strand, within BBR_RS12675at 600.292 kb on - strand, within BBR_RS12675at 600.331 kb on - strand, within BBR_RS12675at 600.331 kb on - strand, within BBR_RS12675at 600.343 kb on + strand, within BBR_RS12675at 600.343 kb on + strand, within BBR_RS12675at 600.343 kb on + strand, within BBR_RS12675at 600.351 kb on - strand, within BBR_RS12675at 600.351 kb on - strand, within BBR_RS12675at 600.351 kb on - strand, within BBR_RS12675at 600.351 kb on - strand, within BBR_RS12675at 600.351 kb on - strand, within BBR_RS12675at 600.351 kb on - strand, within BBR_RS12675at 600.361 kb on + strand, within BBR_RS12675at 600.376 kb on - strand, within BBR_RS12675at 600.398 kb on + strandat 600.398 kb on + strandat 600.398 kb on + strandat 600.398 kb on + strandat 600.401 kb on - strandat 600.402 kb on - strandat 600.403 kb on + strandat 600.403 kb on + strandat 600.403 kb on + strandat 600.411 kb on - strandat 600.411 kb on - strandat 600.411 kb on - strandat 600.411 kb on - strandat 600.478 kb on - strandat 600.478 kb on - strandat 600.548 kb on + strand, within BBR_RS12680at 600.557 kb on + strand, within BBR_RS12680at 600.570 kb on - strand, within BBR_RS12680at 600.580 kb on - strand, within BBR_RS12680at 600.590 kb on - strand, within BBR_RS12680at 600.602 kb on - strand, within BBR_RS12680at 600.604 kb on + strand, within BBR_RS12680at 600.651 kb on + strand, within BBR_RS12680at 600.707 kb on + strand, within BBR_RS12680at 600.772 kb on + strandat 600.784 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction CDM1 without Pyridoxamine
remove
599,478 + BBR_RS12670 0.76 +1.6
599,481 + BBR_RS12670 0.76 -0.6
599,483 + BBR_RS12670 0.77 +0.5
599,483 + BBR_RS12670 0.77 +0.4
599,489 - BBR_RS12670 0.78 -1.6
599,532 + BBR_RS12670 0.88 -0.5
599,532 + BBR_RS12670 0.88 +1.2
599,532 + BBR_RS12670 0.88 -0.7
599,540 - BBR_RS12670 0.89 -0.2
599,540 - BBR_RS12670 0.89 +1.3
599,540 - BBR_RS12670 0.89 -0.4
599,540 - BBR_RS12670 0.89 -1.6
599,598 + -1.3
599,598 + -1.4
599,610 - -1.1
599,613 + -0.3
599,613 + -0.8
599,648 + +1.4
599,648 + -0.2
599,648 + -1.9
599,680 + -0.4
599,680 + -0.4
599,680 + +1.3
599,680 + -0.8
599,680 + +0.1
599,688 - -2.8
599,727 - -0.7
599,745 - BBR_RS12675 0.12 -0.9
599,750 - BBR_RS12675 0.12 +1.0
599,769 + BBR_RS12675 0.15 +1.4
599,841 - BBR_RS12675 0.24 -1.5
599,885 + BBR_RS12675 0.29 +0.2
599,965 + BBR_RS12675 0.39 +0.7
599,965 + BBR_RS12675 0.39 -0.4
599,972 + BBR_RS12675 0.40 +0.4
599,973 - BBR_RS12675 0.40 -0.8
599,973 - BBR_RS12675 0.40 +1.1
600,010 - BBR_RS12675 0.44 -1.6
600,011 - BBR_RS12675 0.45 -3.6
600,024 + BBR_RS12675 0.46 +0.9
600,024 + BBR_RS12675 0.46 +0.2
600,024 + BBR_RS12675 0.46 +0.7
600,024 + BBR_RS12675 0.46 -0.2
600,024 + BBR_RS12675 0.46 +0.7
600,024 + BBR_RS12675 0.46 +0.2
600,032 - BBR_RS12675 0.47 +0.8
600,032 - BBR_RS12675 0.47 +1.2
600,051 - BBR_RS12675 0.50 +0.4
600,056 + BBR_RS12675 0.50 +0.4
600,058 + BBR_RS12675 0.50 -1.0
600,066 + BBR_RS12675 0.51 -0.7
600,071 + BBR_RS12675 0.52 +0.9
600,071 + BBR_RS12675 0.52 -0.4
600,076 + BBR_RS12675 0.53 -0.6
600,079 - BBR_RS12675 0.53 -1.0
600,079 - BBR_RS12675 0.53 +0.2
600,079 - BBR_RS12675 0.53 -1.3
600,079 - BBR_RS12675 0.53 -1.1
600,081 - BBR_RS12675 0.53 -0.3
600,081 - BBR_RS12675 0.53 -0.8
600,110 - BBR_RS12675 0.57 -0.5
600,127 + BBR_RS12675 0.59 +1.0
600,172 + BBR_RS12675 0.65 +0.7
600,205 + BBR_RS12675 0.69 -1.0
600,213 - BBR_RS12675 0.70 -0.3
600,213 - BBR_RS12675 0.70 +3.2
600,237 - BBR_RS12675 0.73 +0.3
600,250 + BBR_RS12675 0.74 -0.4
600,250 + BBR_RS12675 0.74 -0.1
600,255 + BBR_RS12675 0.75 +0.5
600,256 - BBR_RS12675 0.75 +0.2
600,256 - BBR_RS12675 0.75 -0.7
600,256 - BBR_RS12675 0.75 -1.1
600,260 + BBR_RS12675 0.75 -0.6
600,263 - BBR_RS12675 0.76 -1.5
600,263 - BBR_RS12675 0.76 -0.5
600,268 - BBR_RS12675 0.76 -0.0
600,268 - BBR_RS12675 0.76 -0.4
600,268 - BBR_RS12675 0.76 -0.0
600,284 + BBR_RS12675 0.78 -1.2
600,292 - BBR_RS12675 0.79 -0.6
600,331 - BBR_RS12675 0.84 +1.0
600,331 - BBR_RS12675 0.84 -0.1
600,343 + BBR_RS12675 0.86 -1.9
600,343 + BBR_RS12675 0.86 -2.2
600,343 + BBR_RS12675 0.86 +0.4
600,351 - BBR_RS12675 0.87 +0.1
600,351 - BBR_RS12675 0.87 +1.6
600,351 - BBR_RS12675 0.87 -2.0
600,351 - BBR_RS12675 0.87 +1.0
600,351 - BBR_RS12675 0.87 -0.4
600,351 - BBR_RS12675 0.87 -0.7
600,361 + BBR_RS12675 0.88 +0.1
600,376 - BBR_RS12675 0.90 -0.9
600,398 + -0.2
600,398 + +0.2
600,398 + -0.4
600,398 + +0.4
600,401 - -0.1
600,402 - -0.2
600,403 + -2.6
600,403 + -1.8
600,403 + -1.8
600,411 - +1.6
600,411 - +0.2
600,411 - -0.6
600,411 - -0.5
600,478 - -0.3
600,478 - -0.4
600,548 + BBR_RS12680 0.31 -2.4
600,557 + BBR_RS12680 0.34 -0.8
600,570 - BBR_RS12680 0.39 +0.5
600,580 - BBR_RS12680 0.42 -0.8
600,590 - BBR_RS12680 0.46 -0.3
600,602 - BBR_RS12680 0.51 +0.6
600,604 + BBR_RS12680 0.51 -0.1
600,651 + BBR_RS12680 0.68 -2.8
600,707 + BBR_RS12680 0.89 -0.0
600,772 + -1.1
600,784 - -2.6

Or see this region's nucleotide sequence