Experiment: CDM1 without Pyridoxamine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BBR_RS11785 and BBR_RS11790 are separated by 34 nucleotides BBR_RS11790 and BBR_RS11795 are separated by 24 nucleotides BBR_RS11795 and BBR_RS11800 are separated by 175 nucleotides
BBR_RS11785: BBR_RS11785 - Solute binding protein of ABC transporter system for peptide, at 403,366 to 404,895
_RS11785
BBR_RS11790: BBR_RS11790 - endonuclease III, at 404,930 to 405,598
_RS11790
BBR_RS11795: BBR_RS11795 - DNA-binding response regulator, at 405,623 to 406,393
_RS11795
BBR_RS11800: BBR_RS11800 - hypothetical protein, at 406,569 to 407,273
_RS11800
Position (kb) 404
405
406 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 403.936 kb on - strand, within BBR_RS11785 at 403.938 kb on - strand, within BBR_RS11785 at 403.942 kb on + strand, within BBR_RS11785 at 403.995 kb on - strand, within BBR_RS11785 at 404.044 kb on + strand, within BBR_RS11785 at 404.057 kb on - strand, within BBR_RS11785 at 404.062 kb on - strand, within BBR_RS11785 at 404.062 kb on - strand, within BBR_RS11785 at 404.073 kb on + strand, within BBR_RS11785 at 404.073 kb on + strand, within BBR_RS11785 at 404.073 kb on + strand, within BBR_RS11785 at 404.081 kb on - strand, within BBR_RS11785 at 404.081 kb on - strand, within BBR_RS11785 at 404.098 kb on - strand, within BBR_RS11785 at 404.098 kb on - strand, within BBR_RS11785 at 404.111 kb on + strand, within BBR_RS11785 at 404.154 kb on + strand, within BBR_RS11785 at 404.156 kb on + strand, within BBR_RS11785 at 404.183 kb on - strand, within BBR_RS11785 at 404.201 kb on + strand, within BBR_RS11785 at 404.201 kb on + strand, within BBR_RS11785 at 404.201 kb on + strand, within BBR_RS11785 at 404.201 kb on + strand, within BBR_RS11785 at 404.201 kb on + strand, within BBR_RS11785 at 404.209 kb on - strand, within BBR_RS11785 at 404.209 kb on - strand, within BBR_RS11785 at 404.209 kb on - strand, within BBR_RS11785 at 404.219 kb on + strand, within BBR_RS11785 at 404.222 kb on - strand, within BBR_RS11785 at 404.234 kb on - strand, within BBR_RS11785 at 404.246 kb on + strand, within BBR_RS11785 at 404.259 kb on + strand, within BBR_RS11785 at 404.265 kb on - strand, within BBR_RS11785 at 404.272 kb on - strand, within BBR_RS11785 at 404.272 kb on - strand, within BBR_RS11785 at 404.272 kb on - strand, within BBR_RS11785 at 404.274 kb on + strand, within BBR_RS11785 at 404.277 kb on - strand, within BBR_RS11785 at 404.282 kb on - strand, within BBR_RS11785 at 404.297 kb on - strand, within BBR_RS11785 at 404.297 kb on - strand, within BBR_RS11785 at 404.297 kb on - strand, within BBR_RS11785 at 404.348 kb on + strand, within BBR_RS11785 at 404.377 kb on - strand, within BBR_RS11785 at 404.380 kb on + strand, within BBR_RS11785 at 404.392 kb on - strand, within BBR_RS11785 at 404.394 kb on + strand, within BBR_RS11785 at 404.397 kb on - strand, within BBR_RS11785 at 404.402 kb on - strand, within BBR_RS11785 at 404.402 kb on - strand, within BBR_RS11785 at 404.410 kb on - strand, within BBR_RS11785 at 404.417 kb on - strand, within BBR_RS11785 at 404.420 kb on - strand, within BBR_RS11785 at 404.430 kb on - strand, within BBR_RS11785 at 404.472 kb on + strand, within BBR_RS11785 at 404.499 kb on - strand, within BBR_RS11785 at 404.501 kb on - strand, within BBR_RS11785 at 404.506 kb on - strand, within BBR_RS11785 at 404.532 kb on + strand, within BBR_RS11785 at 404.532 kb on - strand, within BBR_RS11785 at 404.537 kb on + strand, within BBR_RS11785 at 404.541 kb on + strand, within BBR_RS11785 at 404.547 kb on + strand, within BBR_RS11785 at 404.555 kb on - strand, within BBR_RS11785 at 404.560 kb on + strand, within BBR_RS11785 at 404.565 kb on + strand, within BBR_RS11785 at 404.565 kb on + strand, within BBR_RS11785 at 404.565 kb on + strand, within BBR_RS11785 at 404.565 kb on + strand, within BBR_RS11785 at 404.565 kb on + strand, within BBR_RS11785 at 404.565 kb on + strand, within BBR_RS11785 at 404.565 kb on + strand, within BBR_RS11785 at 404.565 kb on + strand, within BBR_RS11785 at 404.565 kb on + strand, within BBR_RS11785 at 404.565 kb on + strand, within BBR_RS11785 at 404.565 kb on + strand, within BBR_RS11785 at 404.565 kb on + strand, within BBR_RS11785 at 404.565 kb on + strand, within BBR_RS11785 at 404.567 kb on + strand, within BBR_RS11785 at 404.567 kb on + strand, within BBR_RS11785 at 404.567 kb on + strand, within BBR_RS11785 at 404.568 kb on - strand, within BBR_RS11785 at 404.572 kb on + strand, within BBR_RS11785 at 404.572 kb on + strand, within BBR_RS11785 at 404.573 kb on - strand, within BBR_RS11785 at 404.573 kb on - strand, within BBR_RS11785 at 404.573 kb on - strand, within BBR_RS11785 at 404.573 kb on - strand, within BBR_RS11785 at 404.573 kb on - strand, within BBR_RS11785 at 404.573 kb on - strand, within BBR_RS11785 at 404.573 kb on - strand, within BBR_RS11785 at 404.573 kb on - strand, within BBR_RS11785 at 404.573 kb on - strand, within BBR_RS11785 at 404.573 kb on - strand, within BBR_RS11785 at 404.573 kb on - strand, within BBR_RS11785 at 404.573 kb on - strand, within BBR_RS11785 at 404.573 kb on - strand, within BBR_RS11785 at 404.573 kb on - strand, within BBR_RS11785 at 404.575 kb on - strand, within BBR_RS11785 at 404.575 kb on - strand, within BBR_RS11785 at 404.575 kb on - strand, within BBR_RS11785 at 404.575 kb on - strand, within BBR_RS11785 at 404.624 kb on + strand, within BBR_RS11785 at 404.637 kb on - strand, within BBR_RS11785 at 404.671 kb on - strand, within BBR_RS11785 at 404.679 kb on - strand, within BBR_RS11785 at 404.692 kb on - strand, within BBR_RS11785 at 404.709 kb on - strand, within BBR_RS11785 at 404.805 kb on + strand at 404.816 kb on + strand at 404.816 kb on + strand at 404.816 kb on + strand at 404.816 kb on + strand at 404.817 kb on + strand at 404.817 kb on + strand at 404.817 kb on + strand at 404.824 kb on - strand at 404.824 kb on - strand at 404.824 kb on - strand at 404.824 kb on - strand at 404.824 kb on - strand at 404.828 kb on + strand at 404.828 kb on + strand at 404.828 kb on + strand at 404.830 kb on + strand at 404.831 kb on - strand at 404.835 kb on + strand at 404.835 kb on + strand at 404.836 kb on - strand at 404.838 kb on - strand at 404.838 kb on - strand at 404.849 kb on + strand at 404.860 kb on - strand at 404.865 kb on + strand at 404.867 kb on - strand at 404.885 kb on + strand at 404.885 kb on + strand at 404.893 kb on - strand at 404.893 kb on - strand at 404.905 kb on - strand at 404.912 kb on - strand at 404.921 kb on - strand at 404.932 kb on + strand at 404.937 kb on + strand at 404.944 kb on + strand at 404.944 kb on + strand at 405.006 kb on - strand, within BBR_RS11790 at 405.007 kb on - strand, within BBR_RS11790 at 405.025 kb on + strand, within BBR_RS11790 at 405.025 kb on + strand, within BBR_RS11790 at 405.025 kb on + strand, within BBR_RS11790 at 405.033 kb on - strand, within BBR_RS11790 at 405.033 kb on - strand, within BBR_RS11790 at 405.033 kb on - strand, within BBR_RS11790 at 405.033 kb on - strand, within BBR_RS11790 at 405.038 kb on + strand, within BBR_RS11790 at 405.038 kb on + strand, within BBR_RS11790 at 405.061 kb on - strand, within BBR_RS11790 at 405.061 kb on - strand, within BBR_RS11790 at 405.061 kb on - strand, within BBR_RS11790 at 405.068 kb on - strand, within BBR_RS11790 at 405.068 kb on - strand, within BBR_RS11790 at 405.101 kb on + strand, within BBR_RS11790 at 405.101 kb on + strand, within BBR_RS11790 at 405.101 kb on + strand, within BBR_RS11790 at 405.109 kb on - strand, within BBR_RS11790 at 405.109 kb on - strand, within BBR_RS11790 at 405.109 kb on - strand, within BBR_RS11790 at 405.124 kb on - strand, within BBR_RS11790 at 405.157 kb on + strand, within BBR_RS11790 at 405.195 kb on + strand, within BBR_RS11790 at 405.195 kb on + strand, within BBR_RS11790 at 405.200 kb on + strand, within BBR_RS11790 at 405.240 kb on - strand, within BBR_RS11790 at 405.253 kb on + strand, within BBR_RS11790 at 405.253 kb on - strand, within BBR_RS11790 at 405.253 kb on - strand, within BBR_RS11790 at 405.290 kb on + strand, within BBR_RS11790 at 405.290 kb on + strand, within BBR_RS11790 at 405.297 kb on + strand, within BBR_RS11790 at 405.297 kb on + strand, within BBR_RS11790 at 405.305 kb on - strand, within BBR_RS11790 at 405.310 kb on - strand, within BBR_RS11790 at 405.316 kb on - strand, within BBR_RS11790 at 405.334 kb on + strand, within BBR_RS11790 at 405.342 kb on - strand, within BBR_RS11790 at 405.349 kb on + strand, within BBR_RS11790 at 405.353 kb on + strand, within BBR_RS11790 at 405.375 kb on + strand, within BBR_RS11790 at 405.383 kb on - strand, within BBR_RS11790 at 405.383 kb on - strand, within BBR_RS11790 at 405.383 kb on - strand, within BBR_RS11790 at 405.421 kb on + strand, within BBR_RS11790 at 405.421 kb on + strand, within BBR_RS11790 at 405.421 kb on + strand, within BBR_RS11790 at 405.421 kb on + strand, within BBR_RS11790 at 405.421 kb on + strand, within BBR_RS11790 at 405.421 kb on + strand, within BBR_RS11790 at 405.421 kb on + strand, within BBR_RS11790 at 405.421 kb on + strand, within BBR_RS11790 at 405.421 kb on + strand, within BBR_RS11790 at 405.421 kb on + strand, within BBR_RS11790 at 405.421 kb on + strand, within BBR_RS11790 at 405.421 kb on + strand, within BBR_RS11790 at 405.421 kb on + strand, within BBR_RS11790 at 405.421 kb on - strand, within BBR_RS11790 at 405.421 kb on - strand, within BBR_RS11790 at 405.429 kb on - strand, within BBR_RS11790 at 405.429 kb on - strand, within BBR_RS11790 at 405.443 kb on - strand, within BBR_RS11790 at 405.443 kb on - strand, within BBR_RS11790 at 405.455 kb on + strand, within BBR_RS11790 at 405.455 kb on + strand, within BBR_RS11790 at 405.455 kb on + strand, within BBR_RS11790 at 405.476 kb on + strand, within BBR_RS11790 at 405.480 kb on - strand, within BBR_RS11790 at 405.509 kb on - strand, within BBR_RS11790 at 405.509 kb on - strand, within BBR_RS11790 at 405.531 kb on - strand, within BBR_RS11790 at 405.541 kb on + strand at 405.577 kb on - strand at 405.590 kb on - strand at 405.600 kb on - strand at 405.610 kb on + strand at 405.611 kb on - strand at 405.645 kb on - strand at 405.671 kb on - strand at 405.680 kb on + strand at 405.690 kb on - strand at 406.411 kb on + strand at 406.411 kb on + strand at 406.419 kb on - strand at 406.420 kb on + strand at 406.424 kb on + strand at 406.428 kb on - strand at 406.428 kb on - strand at 406.467 kb on - strand at 406.502 kb on - strand at 406.517 kb on - strand at 406.520 kb on - strand at 406.520 kb on - strand at 406.520 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction CDM1 without Pyridoxamine remove 403,936 - BBR_RS11785 0.37 -0.8 403,938 - BBR_RS11785 0.37 +0.3 403,942 + BBR_RS11785 0.38 +0.3 403,995 - BBR_RS11785 0.41 -1.5 404,044 + BBR_RS11785 0.44 -0.3 404,057 - BBR_RS11785 0.45 -1.3 404,062 - BBR_RS11785 0.45 -0.3 404,062 - BBR_RS11785 0.45 +0.1 404,073 + BBR_RS11785 0.46 +0.6 404,073 + BBR_RS11785 0.46 +0.1 404,073 + BBR_RS11785 0.46 -1.0 404,081 - BBR_RS11785 0.47 +0.2 404,081 - BBR_RS11785 0.47 +0.5 404,098 - BBR_RS11785 0.48 -0.0 404,098 - BBR_RS11785 0.48 -1.8 404,111 + BBR_RS11785 0.49 -0.2 404,154 + BBR_RS11785 0.52 -0.2 404,156 + BBR_RS11785 0.52 +0.4 404,183 - BBR_RS11785 0.53 -2.9 404,201 + BBR_RS11785 0.55 -0.1 404,201 + BBR_RS11785 0.55 +0.2 404,201 + BBR_RS11785 0.55 +0.8 404,201 + BBR_RS11785 0.55 +0.3 404,201 + BBR_RS11785 0.55 +0.3 404,209 - BBR_RS11785 0.55 +0.7 404,209 - BBR_RS11785 0.55 -1.9 404,209 - BBR_RS11785 0.55 -1.2 404,219 + BBR_RS11785 0.56 -0.9 404,222 - BBR_RS11785 0.56 +0.5 404,234 - BBR_RS11785 0.57 -0.5 404,246 + BBR_RS11785 0.58 -1.2 404,259 + BBR_RS11785 0.58 -2.1 404,265 - BBR_RS11785 0.59 +0.4 404,272 - BBR_RS11785 0.59 +0.6 404,272 - BBR_RS11785 0.59 +0.0 404,272 - BBR_RS11785 0.59 -2.9 404,274 + BBR_RS11785 0.59 +0.1 404,277 - BBR_RS11785 0.60 +0.7 404,282 - BBR_RS11785 0.60 +0.4 404,297 - BBR_RS11785 0.61 -1.0 404,297 - BBR_RS11785 0.61 +0.2 404,297 - BBR_RS11785 0.61 -1.3 404,348 + BBR_RS11785 0.64 +0.8 404,377 - BBR_RS11785 0.66 +1.1 404,380 + BBR_RS11785 0.66 +0.7 404,392 - BBR_RS11785 0.67 +0.5 404,394 + BBR_RS11785 0.67 +0.5 404,397 - BBR_RS11785 0.67 -0.4 404,402 - BBR_RS11785 0.68 +0.1 404,402 - BBR_RS11785 0.68 -0.1 404,410 - BBR_RS11785 0.68 -0.2 404,417 - BBR_RS11785 0.69 +0.9 404,420 - BBR_RS11785 0.69 -0.5 404,430 - BBR_RS11785 0.70 +0.3 404,472 + BBR_RS11785 0.72 -0.7 404,499 - BBR_RS11785 0.74 -1.1 404,501 - BBR_RS11785 0.74 +0.6 404,506 - BBR_RS11785 0.75 -0.6 404,532 + BBR_RS11785 0.76 -0.6 404,532 - BBR_RS11785 0.76 -0.6 404,537 + BBR_RS11785 0.77 +1.6 404,541 + BBR_RS11785 0.77 -0.4 404,547 + BBR_RS11785 0.77 -2.1 404,555 - BBR_RS11785 0.78 -0.9 404,560 + BBR_RS11785 0.78 -4.6 404,565 + BBR_RS11785 0.78 -2.1 404,565 + BBR_RS11785 0.78 -0.4 404,565 + BBR_RS11785 0.78 -1.1 404,565 + BBR_RS11785 0.78 -3.2 404,565 + BBR_RS11785 0.78 -0.2 404,565 + BBR_RS11785 0.78 -4.1 404,565 + BBR_RS11785 0.78 +0.1 404,565 + BBR_RS11785 0.78 -1.0 404,565 + BBR_RS11785 0.78 -2.3 404,565 + BBR_RS11785 0.78 -0.9 404,565 + BBR_RS11785 0.78 -0.8 404,565 + BBR_RS11785 0.78 -1.0 404,565 + BBR_RS11785 0.78 -0.7 404,567 + BBR_RS11785 0.78 +0.3 404,567 + BBR_RS11785 0.78 +1.5 404,567 + BBR_RS11785 0.78 -1.1 404,568 - BBR_RS11785 0.79 +0.2 404,572 + BBR_RS11785 0.79 -2.0 404,572 + BBR_RS11785 0.79 -0.9 404,573 - BBR_RS11785 0.79 -0.0 404,573 - BBR_RS11785 0.79 -0.1 404,573 - BBR_RS11785 0.79 -1.2 404,573 - BBR_RS11785 0.79 -0.4 404,573 - BBR_RS11785 0.79 -1.4 404,573 - BBR_RS11785 0.79 -1.0 404,573 - BBR_RS11785 0.79 -1.5 404,573 - BBR_RS11785 0.79 -0.0 404,573 - BBR_RS11785 0.79 -1.6 404,573 - BBR_RS11785 0.79 +0.2 404,573 - BBR_RS11785 0.79 +0.3 404,573 - BBR_RS11785 0.79 +0.6 404,573 - BBR_RS11785 0.79 -0.4 404,573 - BBR_RS11785 0.79 -0.3 404,575 - BBR_RS11785 0.79 -0.4 404,575 - BBR_RS11785 0.79 -0.4 404,575 - BBR_RS11785 0.79 +0.5 404,575 - BBR_RS11785 0.79 -2.0 404,624 + BBR_RS11785 0.82 -2.4 404,637 - BBR_RS11785 0.83 -1.1 404,671 - BBR_RS11785 0.85 +0.3 404,679 - BBR_RS11785 0.86 +0.3 404,692 - BBR_RS11785 0.87 -0.2 404,709 - BBR_RS11785 0.88 -0.3 404,805 + -1.5 404,816 + -1.0 404,816 + -1.1 404,816 + -0.5 404,816 + -2.7 404,817 + -0.9 404,817 + -1.1 404,817 + -1.1 404,824 - +0.2 404,824 - +0.3 404,824 - +0.7 404,824 - -0.1 404,824 - -2.2 404,828 + +0.1 404,828 + -0.8 404,828 + -1.7 404,830 + -1.0 404,831 - +0.3 404,835 + -0.9 404,835 + -2.5 404,836 - +0.5 404,838 - -1.2 404,838 - -0.2 404,849 + -3.0 404,860 - +0.3 404,865 + +0.2 404,867 - -1.0 404,885 + -1.0 404,885 + -0.8 404,893 - -0.7 404,893 - -0.1 404,905 - +0.2 404,912 - -0.4 404,921 - +0.2 404,932 + -1.4 404,937 + -1.8 404,944 + -0.6 404,944 + -1.7 405,006 - BBR_RS11790 0.11 -0.7 405,007 - BBR_RS11790 0.12 +1.4 405,025 + BBR_RS11790 0.14 -0.4 405,025 + BBR_RS11790 0.14 -1.9 405,025 + BBR_RS11790 0.14 -1.3 405,033 - BBR_RS11790 0.15 -0.7 405,033 - BBR_RS11790 0.15 -0.4 405,033 - BBR_RS11790 0.15 -1.0 405,033 - BBR_RS11790 0.15 -0.6 405,038 + BBR_RS11790 0.16 -0.3 405,038 + BBR_RS11790 0.16 +0.0 405,061 - BBR_RS11790 0.20 +0.1 405,061 - BBR_RS11790 0.20 +0.2 405,061 - BBR_RS11790 0.20 -0.3 405,068 - BBR_RS11790 0.21 +0.4 405,068 - BBR_RS11790 0.21 -0.7 405,101 + BBR_RS11790 0.26 -0.1 405,101 + BBR_RS11790 0.26 -0.9 405,101 + BBR_RS11790 0.26 +0.6 405,109 - BBR_RS11790 0.27 -1.0 405,109 - BBR_RS11790 0.27 +0.0 405,109 - BBR_RS11790 0.27 -1.0 405,124 - BBR_RS11790 0.29 +0.2 405,157 + BBR_RS11790 0.34 +0.4 405,195 + BBR_RS11790 0.40 -2.8 405,195 + BBR_RS11790 0.40 -2.5 405,200 + BBR_RS11790 0.40 +0.7 405,240 - BBR_RS11790 0.46 -0.2 405,253 + BBR_RS11790 0.48 -2.1 405,253 - BBR_RS11790 0.48 +0.6 405,253 - BBR_RS11790 0.48 +0.0 405,290 + BBR_RS11790 0.54 -1.9 405,290 + BBR_RS11790 0.54 -3.0 405,297 + BBR_RS11790 0.55 -0.9 405,297 + BBR_RS11790 0.55 -1.9 405,305 - BBR_RS11790 0.56 -0.7 405,310 - BBR_RS11790 0.57 +0.3 405,316 - BBR_RS11790 0.58 -0.1 405,334 + BBR_RS11790 0.60 -2.0 405,342 - BBR_RS11790 0.62 -0.9 405,349 + BBR_RS11790 0.63 -1.3 405,353 + BBR_RS11790 0.63 -1.4 405,375 + BBR_RS11790 0.67 -0.8 405,383 - BBR_RS11790 0.68 -0.2 405,383 - BBR_RS11790 0.68 +1.0 405,383 - BBR_RS11790 0.68 -0.4 405,421 + BBR_RS11790 0.73 -0.9 405,421 + BBR_RS11790 0.73 +1.2 405,421 + BBR_RS11790 0.73 -1.1 405,421 + BBR_RS11790 0.73 -4.4 405,421 + BBR_RS11790 0.73 -0.3 405,421 + BBR_RS11790 0.73 -2.5 405,421 + BBR_RS11790 0.73 -1.9 405,421 + BBR_RS11790 0.73 -3.0 405,421 + BBR_RS11790 0.73 -1.0 405,421 + BBR_RS11790 0.73 -1.7 405,421 + BBR_RS11790 0.73 -1.5 405,421 + BBR_RS11790 0.73 +0.1 405,421 + BBR_RS11790 0.73 +0.2 405,421 - BBR_RS11790 0.73 -1.3 405,421 - BBR_RS11790 0.73 -1.2 405,429 - BBR_RS11790 0.75 -0.3 405,429 - BBR_RS11790 0.75 -0.0 405,443 - BBR_RS11790 0.77 -0.9 405,443 - BBR_RS11790 0.77 -0.0 405,455 + BBR_RS11790 0.78 -2.4 405,455 + BBR_RS11790 0.78 -4.0 405,455 + BBR_RS11790 0.78 -2.5 405,476 + BBR_RS11790 0.82 -1.1 405,480 - BBR_RS11790 0.82 +0.2 405,509 - BBR_RS11790 0.87 +0.2 405,509 - BBR_RS11790 0.87 +0.2 405,531 - BBR_RS11790 0.90 -0.2 405,541 + -2.1 405,577 - -1.5 405,590 - -0.4 405,600 - +0.0 405,610 + -3.2 405,611 - +0.9 405,645 - -0.8 405,671 - -3.7 405,680 + -1.7 405,690 - -1.7 406,411 + -2.6 406,411 + -1.4 406,419 - -0.3 406,420 + -3.3 406,424 + -3.6 406,428 - -3.7 406,428 - +0.3 406,467 - -3.0 406,502 - -1.7 406,517 - -1.0 406,520 - -0.2 406,520 - -0.5 406,520 - +0.5
Or see this region's nucleotide sequence