Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS34745

Experiment: L-Asparagine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS34740 and RR42_RS34745 are separated by 207 nucleotidesRR42_RS34745 and RR42_RS34750 are separated by 777 nucleotides RR42_RS34740: RR42_RS34740 - hypothetical protein, at 3,240,706 to 3,241,383 _RS34740 RR42_RS34745: RR42_RS34745 - hypothetical protein, at 3,241,591 to 3,241,947 _RS34745 RR42_RS34750: RR42_RS34750 - hypothetical protein, at 3,242,725 to 3,243,798 _RS34750 Position (kb) 3241 3242Strain fitness (log2 ratio) -2 -1 0 1 2at 3240.640 kb on + strandat 3240.743 kb on - strandat 3240.743 kb on - strandat 3240.843 kb on + strand, within RR42_RS34740at 3240.844 kb on - strand, within RR42_RS34740at 3240.844 kb on - strand, within RR42_RS34740at 3240.880 kb on + strand, within RR42_RS34740at 3240.940 kb on + strand, within RR42_RS34740at 3240.959 kb on - strand, within RR42_RS34740at 3241.178 kb on - strand, within RR42_RS34740at 3241.178 kb on - strand, within RR42_RS34740at 3241.219 kb on + strand, within RR42_RS34740at 3241.509 kb on - strandat 3241.509 kb on - strandat 3241.594 kb on + strandat 3241.594 kb on + strandat 3241.594 kb on + strandat 3241.825 kb on + strand, within RR42_RS34745at 3241.829 kb on - strand, within RR42_RS34745at 3241.831 kb on + strand, within RR42_RS34745at 3241.832 kb on - strand, within RR42_RS34745at 3241.843 kb on + strand, within RR42_RS34745at 3241.844 kb on - strand, within RR42_RS34745at 3241.844 kb on - strand, within RR42_RS34745at 3241.965 kb on + strandat 3241.966 kb on - strandat 3242.064 kb on + strandat 3242.064 kb on + strandat 3242.065 kb on - strandat 3242.065 kb on - strandat 3242.179 kb on + strandat 3242.225 kb on + strandat 3242.226 kb on - strandat 3242.226 kb on - strandat 3242.226 kb on - strandat 3242.229 kb on + strandat 3242.230 kb on - strandat 3242.369 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (C)
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3,240,640 + -0.5
3,240,743 - +0.7
3,240,743 - -0.1
3,240,843 + RR42_RS34740 0.20 -1.7
3,240,844 - RR42_RS34740 0.20 +0.1
3,240,844 - RR42_RS34740 0.20 +0.5
3,240,880 + RR42_RS34740 0.26 -1.1
3,240,940 + RR42_RS34740 0.35 +0.8
3,240,959 - RR42_RS34740 0.37 -0.3
3,241,178 - RR42_RS34740 0.70 +0.1
3,241,178 - RR42_RS34740 0.70 +1.1
3,241,219 + RR42_RS34740 0.76 -0.4
3,241,509 - -2.4
3,241,509 - -0.5
3,241,594 + +1.1
3,241,594 + +0.9
3,241,594 + -1.3
3,241,825 + RR42_RS34745 0.66 -0.5
3,241,829 - RR42_RS34745 0.67 +1.8
3,241,831 + RR42_RS34745 0.67 +0.3
3,241,832 - RR42_RS34745 0.68 +1.5
3,241,843 + RR42_RS34745 0.71 -0.2
3,241,844 - RR42_RS34745 0.71 +1.0
3,241,844 - RR42_RS34745 0.71 +0.4
3,241,965 + -0.8
3,241,966 - +0.2
3,242,064 + -0.8
3,242,064 + -1.7
3,242,065 - -0.4
3,242,065 - -0.1
3,242,179 + -0.5
3,242,225 + -0.1
3,242,226 - -0.6
3,242,226 - +0.1
3,242,226 - +0.7
3,242,229 + -0.6
3,242,230 - +0.0
3,242,369 + -0.4

Or see this region's nucleotide sequence