Experiment: L-Asparagine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS30310 and RR42_RS30315 are separated by 63 nucleotides RR42_RS30315 and RR42_RS30320 overlap by 32 nucleotides RR42_RS30320 and RR42_RS30325 are separated by 91 nucleotides
RR42_RS30310: RR42_RS30310 - signal transduction protein, at 2,176,174 to 2,176,602
_RS30310
RR42_RS30315: RR42_RS30315 - hypothetical protein, at 2,176,666 to 2,177,097
_RS30315
RR42_RS30320: RR42_RS30320 - hypothetical protein, at 2,177,066 to 2,178,043
_RS30320
RR42_RS30325: RR42_RS30325 - FMN reductase, at 2,178,135 to 2,178,701
_RS30325
Position (kb)
2177
2178
2179 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2176.078 kb on - strand at 2176.140 kb on - strand at 2176.148 kb on - strand at 2176.170 kb on - strand at 2176.172 kb on + strand at 2176.172 kb on + strand at 2176.172 kb on + strand at 2176.180 kb on - strand at 2176.180 kb on - strand at 2176.180 kb on - strand at 2176.185 kb on + strand at 2176.185 kb on + strand at 2176.185 kb on + strand at 2176.185 kb on + strand at 2176.364 kb on + strand, within RR42_RS30310 at 2176.386 kb on + strand, within RR42_RS30310 at 2176.600 kb on + strand at 2176.601 kb on - strand at 2176.601 kb on - strand at 2176.601 kb on - strand at 2176.638 kb on + strand at 2176.638 kb on + strand at 2176.639 kb on - strand at 2176.639 kb on - strand at 2176.667 kb on + strand at 2176.673 kb on + strand at 2177.691 kb on + strand, within RR42_RS30320 at 2177.691 kb on + strand, within RR42_RS30320 at 2178.034 kb on + strand at 2178.034 kb on + strand at 2178.034 kb on + strand at 2178.034 kb on + strand at 2178.035 kb on - strand at 2178.035 kb on - strand at 2178.035 kb on - strand at 2178.035 kb on - strand at 2178.038 kb on + strand at 2178.038 kb on + strand at 2178.038 kb on + strand at 2178.039 kb on - strand at 2178.039 kb on - strand at 2178.039 kb on - strand at 2178.242 kb on - strand, within RR42_RS30325 at 2178.268 kb on + strand, within RR42_RS30325 at 2178.268 kb on + strand, within RR42_RS30325 at 2178.269 kb on - strand, within RR42_RS30325 at 2178.269 kb on - strand, within RR42_RS30325 at 2178.582 kb on - strand, within RR42_RS30325 at 2178.695 kb on + strand at 2178.696 kb on - strand at 2178.696 kb on - strand at 2178.875 kb on + strand at 2178.876 kb on - strand at 2178.876 kb on - strand at 2178.876 kb on - strand at 2178.992 kb on + strand at 2178.998 kb on + strand at 2178.998 kb on + strand at 2178.998 kb on + strand at 2178.999 kb on - strand at 2178.999 kb on - strand at 2179.015 kb on + strand at 2179.015 kb on + strand at 2179.015 kb on + strand at 2179.015 kb on + strand at 2179.017 kb on + strand at 2179.017 kb on + strand at 2179.017 kb on + strand at 2179.018 kb on - strand at 2179.018 kb on - strand at 2179.018 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (C) remove 2,176,078 - -0.2 2,176,140 - +1.6 2,176,148 - -0.5 2,176,170 - -0.0 2,176,172 + +0.2 2,176,172 + +0.2 2,176,172 + -1.3 2,176,180 - -0.7 2,176,180 - -0.9 2,176,180 - +0.6 2,176,185 + +1.2 2,176,185 + +0.8 2,176,185 + -0.7 2,176,185 + +0.2 2,176,364 + RR42_RS30310 0.44 +0.5 2,176,386 + RR42_RS30310 0.49 -0.6 2,176,600 + +2.2 2,176,601 - +0.3 2,176,601 - -0.1 2,176,601 - +0.5 2,176,638 + +0.5 2,176,638 + -0.5 2,176,639 - +0.4 2,176,639 - +0.4 2,176,667 + -0.5 2,176,673 + +0.1 2,177,691 + RR42_RS30320 0.64 -1.1 2,177,691 + RR42_RS30320 0.64 -0.4 2,178,034 + -0.0 2,178,034 + +0.1 2,178,034 + +1.0 2,178,034 + +0.2 2,178,035 - +0.1 2,178,035 - +1.0 2,178,035 - -1.7 2,178,035 - +2.0 2,178,038 + -0.6 2,178,038 + -0.0 2,178,038 + -0.4 2,178,039 - -0.4 2,178,039 - +0.2 2,178,039 - +0.3 2,178,242 - RR42_RS30325 0.19 +0.4 2,178,268 + RR42_RS30325 0.23 +0.3 2,178,268 + RR42_RS30325 0.23 +0.1 2,178,269 - RR42_RS30325 0.24 -0.2 2,178,269 - RR42_RS30325 0.24 -0.2 2,178,582 - RR42_RS30325 0.79 -0.8 2,178,695 + -0.3 2,178,696 - -1.8 2,178,696 - +0.7 2,178,875 + -0.0 2,178,876 - -0.5 2,178,876 - -0.2 2,178,876 - -0.1 2,178,992 + -0.1 2,178,998 + +0.1 2,178,998 + +0.2 2,178,998 + -1.3 2,178,999 - +0.1 2,178,999 - -0.0 2,179,015 + -0.0 2,179,015 + -1.0 2,179,015 + -0.4 2,179,015 + +0.0 2,179,017 + +0.3 2,179,017 + +0.4 2,179,017 + +2.2 2,179,018 - +0.8 2,179,018 - +0.1 2,179,018 - -0.3
Or see this region's nucleotide sequence