Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS30320

Experiment: L-Asparagine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS30310 and RR42_RS30315 are separated by 63 nucleotidesRR42_RS30315 and RR42_RS30320 overlap by 32 nucleotidesRR42_RS30320 and RR42_RS30325 are separated by 91 nucleotides RR42_RS30310: RR42_RS30310 - signal transduction protein, at 2,176,174 to 2,176,602 _RS30310 RR42_RS30315: RR42_RS30315 - hypothetical protein, at 2,176,666 to 2,177,097 _RS30315 RR42_RS30320: RR42_RS30320 - hypothetical protein, at 2,177,066 to 2,178,043 _RS30320 RR42_RS30325: RR42_RS30325 - FMN reductase, at 2,178,135 to 2,178,701 _RS30325 Position (kb) 2177 2178 2179Strain fitness (log2 ratio) -2 -1 0 1 2at 2176.078 kb on - strandat 2176.140 kb on - strandat 2176.148 kb on - strandat 2176.170 kb on - strandat 2176.172 kb on + strandat 2176.172 kb on + strandat 2176.172 kb on + strandat 2176.180 kb on - strandat 2176.180 kb on - strandat 2176.180 kb on - strandat 2176.185 kb on + strandat 2176.185 kb on + strandat 2176.185 kb on + strandat 2176.185 kb on + strandat 2176.364 kb on + strand, within RR42_RS30310at 2176.386 kb on + strand, within RR42_RS30310at 2176.600 kb on + strandat 2176.601 kb on - strandat 2176.601 kb on - strandat 2176.601 kb on - strandat 2176.638 kb on + strandat 2176.638 kb on + strandat 2176.639 kb on - strandat 2176.639 kb on - strandat 2176.667 kb on + strandat 2176.673 kb on + strandat 2177.691 kb on + strand, within RR42_RS30320at 2177.691 kb on + strand, within RR42_RS30320at 2178.034 kb on + strandat 2178.034 kb on + strandat 2178.034 kb on + strandat 2178.034 kb on + strandat 2178.035 kb on - strandat 2178.035 kb on - strandat 2178.035 kb on - strandat 2178.035 kb on - strandat 2178.038 kb on + strandat 2178.038 kb on + strandat 2178.038 kb on + strandat 2178.039 kb on - strandat 2178.039 kb on - strandat 2178.039 kb on - strandat 2178.242 kb on - strand, within RR42_RS30325at 2178.268 kb on + strand, within RR42_RS30325at 2178.268 kb on + strand, within RR42_RS30325at 2178.269 kb on - strand, within RR42_RS30325at 2178.269 kb on - strand, within RR42_RS30325at 2178.582 kb on - strand, within RR42_RS30325at 2178.695 kb on + strandat 2178.696 kb on - strandat 2178.696 kb on - strandat 2178.875 kb on + strandat 2178.876 kb on - strandat 2178.876 kb on - strandat 2178.876 kb on - strandat 2178.992 kb on + strandat 2178.998 kb on + strandat 2178.998 kb on + strandat 2178.998 kb on + strandat 2178.999 kb on - strandat 2178.999 kb on - strandat 2179.015 kb on + strandat 2179.015 kb on + strandat 2179.015 kb on + strandat 2179.015 kb on + strandat 2179.017 kb on + strandat 2179.017 kb on + strandat 2179.017 kb on + strandat 2179.018 kb on - strandat 2179.018 kb on - strandat 2179.018 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (C)
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2,176,078 - -0.2
2,176,140 - +1.6
2,176,148 - -0.5
2,176,170 - -0.0
2,176,172 + +0.2
2,176,172 + +0.2
2,176,172 + -1.3
2,176,180 - -0.7
2,176,180 - -0.9
2,176,180 - +0.6
2,176,185 + +1.2
2,176,185 + +0.8
2,176,185 + -0.7
2,176,185 + +0.2
2,176,364 + RR42_RS30310 0.44 +0.5
2,176,386 + RR42_RS30310 0.49 -0.6
2,176,600 + +2.2
2,176,601 - +0.3
2,176,601 - -0.1
2,176,601 - +0.5
2,176,638 + +0.5
2,176,638 + -0.5
2,176,639 - +0.4
2,176,639 - +0.4
2,176,667 + -0.5
2,176,673 + +0.1
2,177,691 + RR42_RS30320 0.64 -1.1
2,177,691 + RR42_RS30320 0.64 -0.4
2,178,034 + -0.0
2,178,034 + +0.1
2,178,034 + +1.0
2,178,034 + +0.2
2,178,035 - +0.1
2,178,035 - +1.0
2,178,035 - -1.7
2,178,035 - +2.0
2,178,038 + -0.6
2,178,038 + -0.0
2,178,038 + -0.4
2,178,039 - -0.4
2,178,039 - +0.2
2,178,039 - +0.3
2,178,242 - RR42_RS30325 0.19 +0.4
2,178,268 + RR42_RS30325 0.23 +0.3
2,178,268 + RR42_RS30325 0.23 +0.1
2,178,269 - RR42_RS30325 0.24 -0.2
2,178,269 - RR42_RS30325 0.24 -0.2
2,178,582 - RR42_RS30325 0.79 -0.8
2,178,695 + -0.3
2,178,696 - -1.8
2,178,696 - +0.7
2,178,875 + -0.0
2,178,876 - -0.5
2,178,876 - -0.2
2,178,876 - -0.1
2,178,992 + -0.1
2,178,998 + +0.1
2,178,998 + +0.2
2,178,998 + -1.3
2,178,999 - +0.1
2,178,999 - -0.0
2,179,015 + -0.0
2,179,015 + -1.0
2,179,015 + -0.4
2,179,015 + +0.0
2,179,017 + +0.3
2,179,017 + +0.4
2,179,017 + +2.2
2,179,018 - +0.8
2,179,018 - +0.1
2,179,018 - -0.3

Or see this region's nucleotide sequence