Experiment: L-Asparagine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS26990 and RR42_RS26995 overlap by 4 nucleotides RR42_RS26995 and RR42_RS27000 are separated by 13 nucleotides
RR42_RS26990: RR42_RS26990 - membrane protein, at 1,409,246 to 1,410,892
_RS26990
RR42_RS26995: RR42_RS26995 - iron transporter, at 1,410,889 to 1,411,179
_RS26995
RR42_RS27000: RR42_RS27000 - cobalt ABC transporter substrate-binding protein, at 1,411,193 to 1,411,915
_RS27000
Position (kb)
1410
1411
1412 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1410.196 kb on - strand, within RR42_RS26990 at 1410.196 kb on - strand, within RR42_RS26990 at 1410.222 kb on + strand, within RR42_RS26990 at 1410.222 kb on + strand, within RR42_RS26990 at 1410.222 kb on + strand, within RR42_RS26990 at 1410.222 kb on + strand, within RR42_RS26990 at 1410.223 kb on - strand, within RR42_RS26990 at 1410.223 kb on - strand, within RR42_RS26990 at 1410.223 kb on - strand, within RR42_RS26990 at 1410.223 kb on - strand, within RR42_RS26990 at 1410.223 kb on - strand, within RR42_RS26990 at 1410.252 kb on + strand, within RR42_RS26990 at 1410.252 kb on + strand, within RR42_RS26990 at 1410.253 kb on - strand, within RR42_RS26990 at 1410.456 kb on + strand, within RR42_RS26990 at 1410.620 kb on + strand, within RR42_RS26990 at 1410.690 kb on + strand, within RR42_RS26990 at 1410.721 kb on + strand, within RR42_RS26990 at 1410.721 kb on + strand, within RR42_RS26990 at 1410.768 kb on - strand at 1410.789 kb on + strand at 1410.789 kb on + strand at 1410.853 kb on + strand at 1410.854 kb on - strand at 1410.854 kb on - strand at 1410.854 kb on - strand at 1410.854 kb on - strand at 1410.854 kb on - strand at 1411.008 kb on - strand, within RR42_RS26995 at 1411.106 kb on + strand, within RR42_RS26995 at 1411.194 kb on + strand at 1411.194 kb on + strand at 1411.195 kb on - strand at 1411.272 kb on + strand, within RR42_RS27000 at 1411.272 kb on + strand, within RR42_RS27000 at 1411.272 kb on + strand, within RR42_RS27000 at 1411.272 kb on + strand, within RR42_RS27000 at 1411.272 kb on + strand, within RR42_RS27000 at 1411.287 kb on + strand, within RR42_RS27000 at 1411.344 kb on + strand, within RR42_RS27000 at 1411.344 kb on + strand, within RR42_RS27000 at 1411.464 kb on + strand, within RR42_RS27000 at 1411.464 kb on + strand, within RR42_RS27000 at 1411.465 kb on - strand, within RR42_RS27000 at 1411.465 kb on - strand, within RR42_RS27000 at 1411.527 kb on - strand, within RR42_RS27000 at 1411.527 kb on - strand, within RR42_RS27000 at 1411.733 kb on + strand, within RR42_RS27000 at 1411.809 kb on + strand, within RR42_RS27000 at 1411.809 kb on + strand, within RR42_RS27000
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (C) remove 1,410,196 - RR42_RS26990 0.58 -0.6 1,410,196 - RR42_RS26990 0.58 +0.2 1,410,222 + RR42_RS26990 0.59 +0.2 1,410,222 + RR42_RS26990 0.59 +0.3 1,410,222 + RR42_RS26990 0.59 +0.8 1,410,222 + RR42_RS26990 0.59 -0.2 1,410,223 - RR42_RS26990 0.59 -0.2 1,410,223 - RR42_RS26990 0.59 -0.7 1,410,223 - RR42_RS26990 0.59 -0.3 1,410,223 - RR42_RS26990 0.59 -0.0 1,410,223 - RR42_RS26990 0.59 +0.2 1,410,252 + RR42_RS26990 0.61 +0.8 1,410,252 + RR42_RS26990 0.61 -0.0 1,410,253 - RR42_RS26990 0.61 -0.0 1,410,456 + RR42_RS26990 0.73 +0.6 1,410,620 + RR42_RS26990 0.83 +0.0 1,410,690 + RR42_RS26990 0.88 +0.6 1,410,721 + RR42_RS26990 0.90 -0.5 1,410,721 + RR42_RS26990 0.90 +2.4 1,410,768 - -2.2 1,410,789 + -0.2 1,410,789 + -0.0 1,410,853 + -1.1 1,410,854 - -1.5 1,410,854 - -0.0 1,410,854 - +1.4 1,410,854 - +0.3 1,410,854 - -1.7 1,411,008 - RR42_RS26995 0.41 -0.0 1,411,106 + RR42_RS26995 0.75 +0.9 1,411,194 + -0.3 1,411,194 + +0.1 1,411,195 - -1.7 1,411,272 + RR42_RS27000 0.11 -0.9 1,411,272 + RR42_RS27000 0.11 -0.3 1,411,272 + RR42_RS27000 0.11 -0.1 1,411,272 + RR42_RS27000 0.11 -0.5 1,411,272 + RR42_RS27000 0.11 -0.0 1,411,287 + RR42_RS27000 0.13 -0.4 1,411,344 + RR42_RS27000 0.21 -0.3 1,411,344 + RR42_RS27000 0.21 +2.0 1,411,464 + RR42_RS27000 0.37 -0.4 1,411,464 + RR42_RS27000 0.37 +1.2 1,411,465 - RR42_RS27000 0.38 -0.1 1,411,465 - RR42_RS27000 0.38 -0.3 1,411,527 - RR42_RS27000 0.46 -0.5 1,411,527 - RR42_RS27000 0.46 +0.3 1,411,733 + RR42_RS27000 0.75 +0.6 1,411,809 + RR42_RS27000 0.85 -0.6 1,411,809 + RR42_RS27000 0.85 -0.4
Or see this region's nucleotide sequence