Experiment: L-Asparagine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS25870 and RR42_RS25875 are separated by 128 nucleotides RR42_RS25875 and RR42_RS25880 are separated by 105 nucleotides RR42_RS25880 and RR42_RS25885 are separated by 477 nucleotides
RR42_RS25870: RR42_RS25870 - fatty acid hydroxylase, at 1,145,205 to 1,146,329
_RS25870
RR42_RS25875: RR42_RS25875 - hypothetical protein, at 1,146,458 to 1,146,649
_RS25875
RR42_RS25880: RR42_RS25880 - hypothetical protein, at 1,146,755 to 1,147,579
_RS25880
RR42_RS25885: RR42_RS25885 - diguanylate cyclase, at 1,148,057 to 1,149,199
_RS25885
Position (kb)
1146
1147
1148 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1145.799 kb on + strand, within RR42_RS25870 at 1145.799 kb on + strand, within RR42_RS25870 at 1145.814 kb on + strand, within RR42_RS25870 at 1145.814 kb on + strand, within RR42_RS25870 at 1145.814 kb on + strand, within RR42_RS25870 at 1145.883 kb on + strand, within RR42_RS25870 at 1145.883 kb on + strand, within RR42_RS25870 at 1145.883 kb on + strand, within RR42_RS25870 at 1145.883 kb on + strand, within RR42_RS25870 at 1145.883 kb on + strand, within RR42_RS25870 at 1145.883 kb on + strand, within RR42_RS25870 at 1145.888 kb on + strand, within RR42_RS25870 at 1145.940 kb on + strand, within RR42_RS25870 at 1145.941 kb on - strand, within RR42_RS25870 at 1146.044 kb on + strand, within RR42_RS25870 at 1146.044 kb on + strand, within RR42_RS25870 at 1146.159 kb on + strand, within RR42_RS25870 at 1146.430 kb on + strand at 1146.430 kb on + strand at 1146.431 kb on - strand at 1146.432 kb on + strand at 1146.432 kb on + strand at 1146.432 kb on + strand at 1146.432 kb on + strand at 1146.432 kb on + strand at 1146.433 kb on - strand at 1146.433 kb on - strand at 1146.433 kb on - strand at 1146.433 kb on - strand at 1146.433 kb on - strand at 1146.433 kb on - strand at 1146.433 kb on - strand at 1146.433 kb on - strand at 1146.526 kb on + strand, within RR42_RS25875 at 1146.526 kb on + strand, within RR42_RS25875 at 1146.526 kb on + strand, within RR42_RS25875 at 1146.526 kb on + strand, within RR42_RS25875 at 1146.526 kb on + strand, within RR42_RS25875 at 1146.526 kb on + strand, within RR42_RS25875 at 1146.526 kb on + strand, within RR42_RS25875 at 1146.526 kb on + strand, within RR42_RS25875 at 1146.527 kb on - strand, within RR42_RS25875 at 1146.527 kb on - strand, within RR42_RS25875 at 1146.527 kb on - strand, within RR42_RS25875 at 1146.527 kb on - strand, within RR42_RS25875 at 1146.527 kb on - strand, within RR42_RS25875 at 1146.527 kb on - strand, within RR42_RS25875 at 1146.527 kb on - strand, within RR42_RS25875 at 1146.527 kb on - strand, within RR42_RS25875 at 1146.527 kb on - strand, within RR42_RS25875 at 1146.527 kb on - strand, within RR42_RS25875 at 1146.640 kb on - strand at 1146.708 kb on - strand at 1146.708 kb on - strand at 1146.746 kb on - strand at 1146.998 kb on + strand, within RR42_RS25880 at 1147.266 kb on - strand, within RR42_RS25880 at 1147.292 kb on + strand, within RR42_RS25880 at 1147.293 kb on - strand, within RR42_RS25880 at 1147.313 kb on + strand, within RR42_RS25880 at 1147.393 kb on + strand, within RR42_RS25880 at 1147.393 kb on + strand, within RR42_RS25880 at 1147.393 kb on + strand, within RR42_RS25880 at 1147.394 kb on - strand, within RR42_RS25880 at 1147.394 kb on - strand, within RR42_RS25880 at 1147.428 kb on + strand, within RR42_RS25880 at 1147.429 kb on - strand, within RR42_RS25880 at 1147.429 kb on - strand, within RR42_RS25880 at 1147.508 kb on + strand at 1147.509 kb on - strand at 1147.509 kb on - strand at 1147.545 kb on + strand at 1147.545 kb on + strand at 1147.546 kb on - strand at 1147.546 kb on - strand at 1147.567 kb on + strand at 1147.568 kb on - strand at 1147.597 kb on + strand at 1147.606 kb on - strand at 1147.610 kb on + strand at 1147.610 kb on + strand at 1147.610 kb on + strand at 1147.611 kb on - strand at 1147.620 kb on + strand at 1147.638 kb on + strand at 1147.638 kb on + strand at 1147.639 kb on - strand at 1147.655 kb on + strand at 1147.655 kb on + strand at 1147.656 kb on - strand at 1147.656 kb on - strand at 1147.706 kb on + strand at 1147.706 kb on + strand at 1147.707 kb on - strand at 1147.733 kb on + strand at 1147.734 kb on - strand at 1147.843 kb on - strand at 1147.843 kb on - strand at 1147.888 kb on + strand at 1147.889 kb on - strand at 1147.967 kb on + strand at 1147.967 kb on + strand at 1147.967 kb on + strand at 1148.032 kb on + strand at 1148.033 kb on - strand at 1148.039 kb on + strand at 1148.039 kb on + strand at 1148.040 kb on - strand at 1148.040 kb on - strand at 1148.040 kb on - strand at 1148.158 kb on + strand at 1148.159 kb on - strand at 1148.173 kb on - strand, within RR42_RS25885 at 1148.219 kb on + strand, within RR42_RS25885 at 1148.219 kb on + strand, within RR42_RS25885 at 1148.220 kb on - strand, within RR42_RS25885 at 1148.300 kb on + strand, within RR42_RS25885 at 1148.301 kb on - strand, within RR42_RS25885 at 1148.445 kb on + strand, within RR42_RS25885 at 1148.445 kb on + strand, within RR42_RS25885 at 1148.445 kb on + strand, within RR42_RS25885 at 1148.446 kb on - strand, within RR42_RS25885 at 1148.446 kb on - strand, within RR42_RS25885 at 1148.454 kb on + strand, within RR42_RS25885
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (C) remove 1,145,799 + RR42_RS25870 0.53 -0.2 1,145,799 + RR42_RS25870 0.53 -0.6 1,145,814 + RR42_RS25870 0.54 -0.8 1,145,814 + RR42_RS25870 0.54 +1.0 1,145,814 + RR42_RS25870 0.54 -0.9 1,145,883 + RR42_RS25870 0.60 -0.3 1,145,883 + RR42_RS25870 0.60 +2.2 1,145,883 + RR42_RS25870 0.60 -0.4 1,145,883 + RR42_RS25870 0.60 +0.4 1,145,883 + RR42_RS25870 0.60 -0.4 1,145,883 + RR42_RS25870 0.60 -0.0 1,145,888 + RR42_RS25870 0.61 -0.4 1,145,940 + RR42_RS25870 0.65 +0.1 1,145,941 - RR42_RS25870 0.65 -0.1 1,146,044 + RR42_RS25870 0.75 -0.3 1,146,044 + RR42_RS25870 0.75 -0.3 1,146,159 + RR42_RS25870 0.85 -0.3 1,146,430 + -0.6 1,146,430 + +0.4 1,146,431 - -0.7 1,146,432 + -0.0 1,146,432 + -0.1 1,146,432 + +0.2 1,146,432 + +0.5 1,146,432 + +0.4 1,146,433 - +0.1 1,146,433 - +0.7 1,146,433 - -1.2 1,146,433 - -1.0 1,146,433 - +0.6 1,146,433 - -0.3 1,146,433 - +0.7 1,146,433 - +0.5 1,146,526 + RR42_RS25875 0.35 -0.5 1,146,526 + RR42_RS25875 0.35 +1.0 1,146,526 + RR42_RS25875 0.35 -0.5 1,146,526 + RR42_RS25875 0.35 -0.1 1,146,526 + RR42_RS25875 0.35 -0.7 1,146,526 + RR42_RS25875 0.35 -1.0 1,146,526 + RR42_RS25875 0.35 +0.1 1,146,526 + RR42_RS25875 0.35 +0.1 1,146,527 - RR42_RS25875 0.36 -1.2 1,146,527 - RR42_RS25875 0.36 -0.1 1,146,527 - RR42_RS25875 0.36 -0.6 1,146,527 - RR42_RS25875 0.36 +0.7 1,146,527 - RR42_RS25875 0.36 -0.6 1,146,527 - RR42_RS25875 0.36 -2.5 1,146,527 - RR42_RS25875 0.36 +0.4 1,146,527 - RR42_RS25875 0.36 -0.3 1,146,527 - RR42_RS25875 0.36 -0.3 1,146,527 - RR42_RS25875 0.36 +0.5 1,146,640 - +0.3 1,146,708 - +0.1 1,146,708 - -0.0 1,146,746 - +0.1 1,146,998 + RR42_RS25880 0.29 +0.8 1,147,266 - RR42_RS25880 0.62 +0.5 1,147,292 + RR42_RS25880 0.65 -0.5 1,147,293 - RR42_RS25880 0.65 +0.6 1,147,313 + RR42_RS25880 0.68 -0.2 1,147,393 + RR42_RS25880 0.77 -0.3 1,147,393 + RR42_RS25880 0.77 -0.6 1,147,393 + RR42_RS25880 0.77 +0.3 1,147,394 - RR42_RS25880 0.77 -0.8 1,147,394 - RR42_RS25880 0.77 -0.6 1,147,428 + RR42_RS25880 0.82 -0.3 1,147,429 - RR42_RS25880 0.82 -2.0 1,147,429 - RR42_RS25880 0.82 -0.1 1,147,508 + +1.9 1,147,509 - -0.4 1,147,509 - -0.4 1,147,545 + -1.0 1,147,545 + -0.9 1,147,546 - +0.2 1,147,546 - -1.0 1,147,567 + -0.5 1,147,568 - -0.2 1,147,597 + +0.7 1,147,606 - +1.0 1,147,610 + -1.1 1,147,610 + -0.9 1,147,610 + +0.6 1,147,611 - +1.4 1,147,620 + -1.3 1,147,638 + -0.3 1,147,638 + -0.5 1,147,639 - -0.9 1,147,655 + -0.7 1,147,655 + -0.1 1,147,656 - +0.1 1,147,656 - -0.6 1,147,706 + -1.8 1,147,706 + +0.5 1,147,707 - +0.5 1,147,733 + -0.4 1,147,734 - +0.3 1,147,843 - -0.7 1,147,843 - -0.4 1,147,888 + -0.8 1,147,889 - +0.1 1,147,967 + +0.3 1,147,967 + +0.7 1,147,967 + -1.4 1,148,032 + +0.3 1,148,033 - -0.2 1,148,039 + -0.8 1,148,039 + -0.9 1,148,040 - -0.8 1,148,040 - +0.2 1,148,040 - +0.1 1,148,158 + +2.0 1,148,159 - -0.9 1,148,173 - RR42_RS25885 0.10 -1.0 1,148,219 + RR42_RS25885 0.14 -1.3 1,148,219 + RR42_RS25885 0.14 -0.8 1,148,220 - RR42_RS25885 0.14 -0.2 1,148,300 + RR42_RS25885 0.21 -0.4 1,148,301 - RR42_RS25885 0.21 -0.5 1,148,445 + RR42_RS25885 0.34 -0.9 1,148,445 + RR42_RS25885 0.34 -0.2 1,148,445 + RR42_RS25885 0.34 -0.7 1,148,446 - RR42_RS25885 0.34 -0.8 1,148,446 - RR42_RS25885 0.34 -0.7 1,148,454 + RR42_RS25885 0.35 -0.0
Or see this region's nucleotide sequence