Experiment: L-Asparagine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS25110 and RR42_RS25115 are separated by 271 nucleotides RR42_RS25115 and RR42_RS25120 are separated by 39 nucleotides
RR42_RS25110: RR42_RS25110 - nitroreductase, at 971,064 to 971,747
_RS25110
RR42_RS25115: RR42_RS25115 - IclR family transcriptional regulator, at 972,019 to 972,762
_RS25115
RR42_RS25120: RR42_RS25120 - IclR family transcriptional regulator, at 972,802 to 973,581
_RS25120
Position (kb) 972
973 Strain fitness (log2 ratio) -2
-1
0
1 at 971.096 kb on - strand at 971.133 kb on + strand, within RR42_RS25110 at 971.230 kb on + strand, within RR42_RS25110 at 971.234 kb on + strand, within RR42_RS25110 at 971.235 kb on - strand, within RR42_RS25110 at 971.343 kb on + strand, within RR42_RS25110 at 971.379 kb on + strand, within RR42_RS25110 at 971.380 kb on - strand, within RR42_RS25110 at 971.502 kb on + strand, within RR42_RS25110 at 971.502 kb on + strand, within RR42_RS25110 at 971.503 kb on - strand, within RR42_RS25110 at 971.503 kb on - strand, within RR42_RS25110 at 971.889 kb on + strand at 971.911 kb on + strand at 972.172 kb on + strand, within RR42_RS25115 at 972.226 kb on + strand, within RR42_RS25115 at 972.226 kb on + strand, within RR42_RS25115 at 972.227 kb on - strand, within RR42_RS25115 at 972.473 kb on - strand, within RR42_RS25115 at 972.563 kb on - strand, within RR42_RS25115 at 972.563 kb on - strand, within RR42_RS25115 at 972.563 kb on - strand, within RR42_RS25115 at 972.813 kb on + strand at 972.813 kb on + strand at 972.814 kb on - strand at 972.993 kb on - strand, within RR42_RS25120 at 972.993 kb on - strand, within RR42_RS25120 at 973.106 kb on + strand, within RR42_RS25120 at 973.235 kb on + strand, within RR42_RS25120 at 973.235 kb on + strand, within RR42_RS25120 at 973.235 kb on + strand, within RR42_RS25120 at 973.243 kb on - strand, within RR42_RS25120 at 973.243 kb on - strand, within RR42_RS25120 at 973.347 kb on - strand, within RR42_RS25120 at 973.507 kb on - strand at 973.680 kb on + strand at 973.680 kb on + strand at 973.680 kb on + strand at 973.680 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (C) remove 971,096 - +0.2 971,133 + RR42_RS25110 0.10 +0.1 971,230 + RR42_RS25110 0.24 -2.0 971,234 + RR42_RS25110 0.25 +0.6 971,235 - RR42_RS25110 0.25 -0.0 971,343 + RR42_RS25110 0.41 +0.5 971,379 + RR42_RS25110 0.46 -0.2 971,380 - RR42_RS25110 0.46 -0.7 971,502 + RR42_RS25110 0.64 -0.7 971,502 + RR42_RS25110 0.64 +0.2 971,503 - RR42_RS25110 0.64 +0.5 971,503 - RR42_RS25110 0.64 +0.6 971,889 + -0.2 971,911 + -0.3 972,172 + RR42_RS25115 0.21 +0.7 972,226 + RR42_RS25115 0.28 +1.0 972,226 + RR42_RS25115 0.28 +0.6 972,227 - RR42_RS25115 0.28 -0.2 972,473 - RR42_RS25115 0.61 +0.2 972,563 - RR42_RS25115 0.73 -0.1 972,563 - RR42_RS25115 0.73 +0.4 972,563 - RR42_RS25115 0.73 +0.5 972,813 + -2.4 972,813 + -0.6 972,814 - +0.3 972,993 - RR42_RS25120 0.24 +0.1 972,993 - RR42_RS25120 0.24 -1.4 973,106 + RR42_RS25120 0.39 +1.3 973,235 + RR42_RS25120 0.56 -0.6 973,235 + RR42_RS25120 0.56 -0.1 973,235 + RR42_RS25120 0.56 -0.3 973,243 - RR42_RS25120 0.57 -0.0 973,243 - RR42_RS25120 0.57 -0.5 973,347 - RR42_RS25120 0.70 +0.8 973,507 - +0.2 973,680 + +0.0 973,680 + -0.4 973,680 + -0.4 973,680 + +0.2
Or see this region's nucleotide sequence