Experiment: L-Asparagine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS19995 and RR42_RS20000 are separated by 54 nucleotides RR42_RS20000 and RR42_RS20005 are separated by 61 nucleotides RR42_RS20005 and RR42_RS20010 are separated by 46 nucleotides RR42_RS20010 and RR42_RS20015 are separated by 751 nucleotides
RR42_RS19995: RR42_RS19995 - class I peptide chain release factor, at 4,321,171 to 4,321,575
_RS19995
RR42_RS20000: RR42_RS20000 - lytic transglycosylase, at 4,321,630 to 4,322,121
_RS20000
RR42_RS20005: RR42_RS20005 - hypothetical protein, at 4,322,183 to 4,322,518
_RS20005
RR42_RS20010: RR42_RS20010 - hypothetical protein, at 4,322,565 to 4,322,930
_RS20010
RR42_RS20015: RR42_RS20015 - tRNA-Arg, at 4,323,682 to 4,323,757
_RS20015
Position (kb)
4322
4323 Strain fitness (log2 ratio)
-2
-1
0
1 at 4321.587 kb on + strand at 4321.587 kb on + strand at 4321.587 kb on + strand at 4321.620 kb on + strand at 4321.688 kb on + strand, within RR42_RS20000 at 4321.689 kb on - strand, within RR42_RS20000 at 4321.721 kb on + strand, within RR42_RS20000 at 4321.790 kb on + strand, within RR42_RS20000 at 4321.791 kb on - strand, within RR42_RS20000 at 4321.791 kb on - strand, within RR42_RS20000 at 4322.103 kb on + strand at 4322.226 kb on + strand, within RR42_RS20005 at 4322.397 kb on + strand, within RR42_RS20005 at 4322.398 kb on - strand, within RR42_RS20005 at 4322.544 kb on + strand at 4322.544 kb on + strand at 4322.566 kb on + strand at 4322.599 kb on + strand at 4322.599 kb on + strand at 4322.661 kb on + strand, within RR42_RS20010 at 4322.690 kb on - strand, within RR42_RS20010 at 4323.059 kb on + strand at 4323.059 kb on + strand at 4323.060 kb on - strand at 4323.094 kb on - strand at 4323.324 kb on - strand at 4323.324 kb on - strand at 4323.556 kb on - strand at 4323.625 kb on + strand at 4323.626 kb on - strand at 4323.651 kb on - strand at 4323.775 kb on - strand at 4323.818 kb on - strand at 4323.818 kb on - strand at 4323.818 kb on - strand at 4323.818 kb on - strand at 4323.924 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (C) remove 4,321,587 + -1.4 4,321,587 + -0.2 4,321,587 + -0.4 4,321,620 + +0.8 4,321,688 + RR42_RS20000 0.12 -0.3 4,321,689 - RR42_RS20000 0.12 +0.2 4,321,721 + RR42_RS20000 0.18 -1.1 4,321,790 + RR42_RS20000 0.33 -0.0 4,321,791 - RR42_RS20000 0.33 +0.2 4,321,791 - RR42_RS20000 0.33 -1.4 4,322,103 + -0.0 4,322,226 + RR42_RS20005 0.13 +0.1 4,322,397 + RR42_RS20005 0.64 -0.4 4,322,398 - RR42_RS20005 0.64 +0.4 4,322,544 + +0.2 4,322,544 + +0.5 4,322,566 + -0.7 4,322,599 + +0.0 4,322,599 + +0.0 4,322,661 + RR42_RS20010 0.26 +0.9 4,322,690 - RR42_RS20010 0.34 +0.3 4,323,059 + -0.2 4,323,059 + +1.3 4,323,060 - -0.6 4,323,094 - +1.4 4,323,324 - +0.4 4,323,324 - -1.7 4,323,556 - -1.8 4,323,625 + -0.2 4,323,626 - -1.1 4,323,651 - +0.1 4,323,775 - -0.6 4,323,818 - +0.0 4,323,818 - -0.2 4,323,818 - +0.5 4,323,818 - +0.2 4,323,924 + +0.0
Or see this region's nucleotide sequence