Experiment: L-Asparagine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS19875 and RR42_RS19880 are separated by 247 nucleotides RR42_RS19880 and RR42_RS19885 are separated by 565 nucleotides
RR42_RS19875: RR42_RS19875 - metalloprotease, at 4,291,582 to 4,292,475
_RS19875
RR42_RS19880: RR42_RS19880 - hypothetical protein, at 4,292,723 to 4,292,950
_RS19880
RR42_RS19885: RR42_RS19885 - aminoglycoside transporter, at 4,293,516 to 4,296,614
_RS19885
Position (kb) 4292
4293 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4291.887 kb on + strand, within RR42_RS19875 at 4291.887 kb on + strand, within RR42_RS19875 at 4291.887 kb on + strand, within RR42_RS19875 at 4291.888 kb on - strand, within RR42_RS19875 at 4291.915 kb on + strand, within RR42_RS19875 at 4291.996 kb on + strand, within RR42_RS19875 at 4292.020 kb on + strand, within RR42_RS19875 at 4292.020 kb on + strand, within RR42_RS19875 at 4292.020 kb on + strand, within RR42_RS19875 at 4292.021 kb on - strand, within RR42_RS19875 at 4292.021 kb on - strand, within RR42_RS19875 at 4292.089 kb on + strand, within RR42_RS19875 at 4292.089 kb on + strand, within RR42_RS19875 at 4292.089 kb on + strand, within RR42_RS19875 at 4292.089 kb on + strand, within RR42_RS19875 at 4292.089 kb on + strand, within RR42_RS19875 at 4292.090 kb on - strand, within RR42_RS19875 at 4292.090 kb on - strand, within RR42_RS19875 at 4292.090 kb on - strand, within RR42_RS19875 at 4292.356 kb on + strand, within RR42_RS19875 at 4292.356 kb on + strand, within RR42_RS19875 at 4292.357 kb on - strand, within RR42_RS19875 at 4292.543 kb on - strand at 4292.575 kb on + strand at 4292.575 kb on + strand at 4292.595 kb on + strand at 4292.658 kb on + strand at 4292.855 kb on + strand, within RR42_RS19880 at 4292.872 kb on - strand, within RR42_RS19880 at 4292.873 kb on + strand, within RR42_RS19880 at 4292.873 kb on + strand, within RR42_RS19880 at 4292.873 kb on + strand, within RR42_RS19880 at 4292.874 kb on - strand, within RR42_RS19880 at 4292.874 kb on - strand, within RR42_RS19880 at 4293.011 kb on + strand at 4293.011 kb on + strand at 4293.011 kb on + strand at 4293.011 kb on + strand at 4293.011 kb on + strand at 4293.012 kb on - strand at 4293.044 kb on + strand at 4293.044 kb on + strand at 4293.194 kb on + strand at 4293.927 kb on + strand, within RR42_RS19885 at 4293.927 kb on + strand, within RR42_RS19885 at 4293.928 kb on - strand, within RR42_RS19885
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (C) remove 4,291,887 + RR42_RS19875 0.34 -0.6 4,291,887 + RR42_RS19875 0.34 +1.6 4,291,887 + RR42_RS19875 0.34 -0.6 4,291,888 - RR42_RS19875 0.34 -0.6 4,291,915 + RR42_RS19875 0.37 +0.7 4,291,996 + RR42_RS19875 0.46 -0.2 4,292,020 + RR42_RS19875 0.49 +0.1 4,292,020 + RR42_RS19875 0.49 +1.6 4,292,020 + RR42_RS19875 0.49 +0.4 4,292,021 - RR42_RS19875 0.49 -0.8 4,292,021 - RR42_RS19875 0.49 +0.3 4,292,089 + RR42_RS19875 0.57 -1.2 4,292,089 + RR42_RS19875 0.57 -0.7 4,292,089 + RR42_RS19875 0.57 +0.6 4,292,089 + RR42_RS19875 0.57 -0.4 4,292,089 + RR42_RS19875 0.57 +0.3 4,292,090 - RR42_RS19875 0.57 +0.0 4,292,090 - RR42_RS19875 0.57 +0.3 4,292,090 - RR42_RS19875 0.57 +0.2 4,292,356 + RR42_RS19875 0.87 -0.3 4,292,356 + RR42_RS19875 0.87 +0.2 4,292,357 - RR42_RS19875 0.87 -0.1 4,292,543 - +0.0 4,292,575 + +0.6 4,292,575 + +1.0 4,292,595 + -0.5 4,292,658 + -0.1 4,292,855 + RR42_RS19880 0.58 -0.2 4,292,872 - RR42_RS19880 0.65 -0.4 4,292,873 + RR42_RS19880 0.66 -0.3 4,292,873 + RR42_RS19880 0.66 -2.8 4,292,873 + RR42_RS19880 0.66 -1.1 4,292,874 - RR42_RS19880 0.66 -0.4 4,292,874 - RR42_RS19880 0.66 -1.0 4,293,011 + +0.0 4,293,011 + +1.0 4,293,011 + +1.4 4,293,011 + +0.2 4,293,011 + -1.1 4,293,012 - +0.1 4,293,044 + -0.2 4,293,044 + -0.9 4,293,194 + +1.1 4,293,927 + RR42_RS19885 0.13 -1.0 4,293,927 + RR42_RS19885 0.13 +0.6 4,293,928 - RR42_RS19885 0.13 +0.4
Or see this region's nucleotide sequence