Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS18230

Experiment: L-Asparagine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS18220 and RR42_RS18225 are separated by 332 nucleotidesRR42_RS18225 and RR42_RS18230 are separated by 113 nucleotidesRR42_RS18230 and RR42_RS18235 are separated by 295 nucleotidesRR42_RS18235 and RR42_RS18240 are separated by 48 nucleotidesRR42_RS18240 and RR42_RS18245 are separated by 21 nucleotides RR42_RS18220: RR42_RS18220 - hypothetical protein, at 3,948,441 to 3,949,397 _RS18220 RR42_RS18225: RR42_RS18225 - 5S ribosomal RNA, at 3,949,730 to 3,949,842 _RS18225 RR42_RS18230: RR42_RS18230 - 23S ribosomal RNA, at 3,949,956 to 3,952,857 _RS18230 RR42_RS18235: RR42_RS18235 - tRNA-Ala, at 3,953,153 to 3,953,228 _RS18235 RR42_RS18240: RR42_RS18240 - tRNA-Ile, at 3,953,277 to 3,953,353 _RS18240 RR42_RS18245: RR42_RS18245 - 16S ribosomal RNA, at 3,953,375 to 3,954,949 _RS18245 Position (kb) 3949 3950 3951 3952 3953Strain fitness (log2 ratio) -1 0 1 2 3 4at 3948.986 kb on + strand, within RR42_RS18220at 3948.988 kb on + strand, within RR42_RS18220at 3949.091 kb on + strand, within RR42_RS18220at 3949.092 kb on - strand, within RR42_RS18220at 3949.092 kb on - strand, within RR42_RS18220at 3949.093 kb on - strand, within RR42_RS18220at 3949.209 kb on + strand, within RR42_RS18220at 3949.356 kb on + strandat 3949.356 kb on + strandat 3949.356 kb on + strandat 3949.372 kb on - strandat 3949.558 kb on + strandat 3949.559 kb on - strandat 3949.605 kb on + strandat 3949.606 kb on - strandat 3949.617 kb on + strandat 3949.630 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (C)
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3,948,986 + RR42_RS18220 0.57 +0.9
3,948,988 + RR42_RS18220 0.57 -0.9
3,949,091 + RR42_RS18220 0.68 +0.5
3,949,092 - RR42_RS18220 0.68 +0.2
3,949,092 - RR42_RS18220 0.68 -0.7
3,949,093 - RR42_RS18220 0.68 -0.7
3,949,209 + RR42_RS18220 0.80 -0.7
3,949,356 + +0.8
3,949,356 + +1.2
3,949,356 + +0.2
3,949,372 - +0.3
3,949,558 + -0.4
3,949,559 - +4.3
3,949,605 + -0.1
3,949,606 - +0.2
3,949,617 + +0.6
3,949,630 - -0.4

Or see this region's nucleotide sequence