Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS16620

Experiment: L-Asparagine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS16615 and RR42_RS16620 overlap by 4 nucleotidesRR42_RS16620 and RR42_RS16625 are separated by 417 nucleotides RR42_RS16615: RR42_RS16615 - hypothetical protein, at 3,601,263 to 3,602,258 _RS16615 RR42_RS16620: RR42_RS16620 - hypothetical protein, at 3,602,255 to 3,602,440 _RS16620 RR42_RS16625: RR42_RS16625 - hypothetical protein, at 3,602,858 to 3,603,766 _RS16625 Position (kb) 3602 3603Strain fitness (log2 ratio) -2 -1 0 1 2at 3601.420 kb on - strand, within RR42_RS16615at 3601.420 kb on - strand, within RR42_RS16615at 3601.456 kb on + strand, within RR42_RS16615at 3601.456 kb on + strand, within RR42_RS16615at 3601.489 kb on + strand, within RR42_RS16615at 3601.525 kb on - strand, within RR42_RS16615at 3601.537 kb on + strand, within RR42_RS16615at 3601.550 kb on + strand, within RR42_RS16615at 3601.551 kb on - strand, within RR42_RS16615at 3601.603 kb on - strand, within RR42_RS16615at 3601.671 kb on - strand, within RR42_RS16615at 3601.778 kb on + strand, within RR42_RS16615at 3601.841 kb on + strand, within RR42_RS16615at 3602.019 kb on - strand, within RR42_RS16615at 3602.019 kb on - strand, within RR42_RS16615at 3602.042 kb on + strand, within RR42_RS16615at 3602.042 kb on + strand, within RR42_RS16615at 3602.043 kb on - strand, within RR42_RS16615at 3602.156 kb on - strand, within RR42_RS16615at 3602.232 kb on + strandat 3602.256 kb on + strandat 3602.257 kb on - strandat 3602.401 kb on + strand, within RR42_RS16620at 3602.402 kb on - strand, within RR42_RS16620at 3602.414 kb on + strand, within RR42_RS16620at 3602.415 kb on - strand, within RR42_RS16620at 3602.431 kb on + strandat 3602.500 kb on - strandat 3602.627 kb on + strandat 3602.627 kb on + strandat 3602.628 kb on - strandat 3602.628 kb on - strandat 3602.628 kb on - strandat 3602.684 kb on - strandat 3602.684 kb on - strandat 3602.784 kb on + strandat 3602.785 kb on - strandat 3602.785 kb on - strandat 3602.822 kb on + strandat 3602.822 kb on + strandat 3602.823 kb on - strandat 3602.826 kb on - strandat 3602.826 kb on - strandat 3602.924 kb on - strandat 3602.954 kb on + strand, within RR42_RS16625at 3602.955 kb on - strand, within RR42_RS16625at 3603.057 kb on + strand, within RR42_RS16625at 3603.058 kb on - strand, within RR42_RS16625at 3603.349 kb on - strand, within RR42_RS16625at 3603.383 kb on + strand, within RR42_RS16625at 3603.384 kb on - strand, within RR42_RS16625

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (C)
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3,601,420 - RR42_RS16615 0.16 -0.4
3,601,420 - RR42_RS16615 0.16 +0.3
3,601,456 + RR42_RS16615 0.19 -0.8
3,601,456 + RR42_RS16615 0.19 -0.5
3,601,489 + RR42_RS16615 0.23 +0.1
3,601,525 - RR42_RS16615 0.26 +0.3
3,601,537 + RR42_RS16615 0.28 +1.1
3,601,550 + RR42_RS16615 0.29 -1.1
3,601,551 - RR42_RS16615 0.29 -0.9
3,601,603 - RR42_RS16615 0.34 +0.1
3,601,671 - RR42_RS16615 0.41 +0.5
3,601,778 + RR42_RS16615 0.52 +0.3
3,601,841 + RR42_RS16615 0.58 +0.5
3,602,019 - RR42_RS16615 0.76 +0.2
3,602,019 - RR42_RS16615 0.76 +0.5
3,602,042 + RR42_RS16615 0.78 +0.8
3,602,042 + RR42_RS16615 0.78 -2.0
3,602,043 - RR42_RS16615 0.78 +0.0
3,602,156 - RR42_RS16615 0.90 -0.6
3,602,232 + +0.4
3,602,256 + -1.7
3,602,257 - +0.1
3,602,401 + RR42_RS16620 0.78 -0.1
3,602,402 - RR42_RS16620 0.79 -1.0
3,602,414 + RR42_RS16620 0.85 -1.0
3,602,415 - RR42_RS16620 0.86 -0.6
3,602,431 + -0.5
3,602,500 - +0.8
3,602,627 + +1.0
3,602,627 + +0.3
3,602,628 - +1.1
3,602,628 - +0.5
3,602,628 - +0.5
3,602,684 - -0.4
3,602,684 - +0.4
3,602,784 + -1.2
3,602,785 - +0.4
3,602,785 - +0.6
3,602,822 + +0.5
3,602,822 + -0.6
3,602,823 - +2.4
3,602,826 - +0.7
3,602,826 - -0.0
3,602,924 - +0.2
3,602,954 + RR42_RS16625 0.11 +0.2
3,602,955 - RR42_RS16625 0.11 +2.4
3,603,057 + RR42_RS16625 0.22 +0.2
3,603,058 - RR42_RS16625 0.22 +0.4
3,603,349 - RR42_RS16625 0.54 +0.4
3,603,383 + RR42_RS16625 0.58 +0.1
3,603,384 - RR42_RS16625 0.58 -1.4

Or see this region's nucleotide sequence