Experiment: L-Asparagine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS16615 and RR42_RS16620 overlap by 4 nucleotides RR42_RS16620 and RR42_RS16625 are separated by 417 nucleotides
RR42_RS16615: RR42_RS16615 - hypothetical protein, at 3,601,263 to 3,602,258
_RS16615
RR42_RS16620: RR42_RS16620 - hypothetical protein, at 3,602,255 to 3,602,440
_RS16620
RR42_RS16625: RR42_RS16625 - hypothetical protein, at 3,602,858 to 3,603,766
_RS16625
Position (kb)
3602
3603 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3601.420 kb on - strand, within RR42_RS16615 at 3601.420 kb on - strand, within RR42_RS16615 at 3601.456 kb on + strand, within RR42_RS16615 at 3601.456 kb on + strand, within RR42_RS16615 at 3601.489 kb on + strand, within RR42_RS16615 at 3601.525 kb on - strand, within RR42_RS16615 at 3601.537 kb on + strand, within RR42_RS16615 at 3601.550 kb on + strand, within RR42_RS16615 at 3601.551 kb on - strand, within RR42_RS16615 at 3601.603 kb on - strand, within RR42_RS16615 at 3601.671 kb on - strand, within RR42_RS16615 at 3601.778 kb on + strand, within RR42_RS16615 at 3601.841 kb on + strand, within RR42_RS16615 at 3602.019 kb on - strand, within RR42_RS16615 at 3602.019 kb on - strand, within RR42_RS16615 at 3602.042 kb on + strand, within RR42_RS16615 at 3602.042 kb on + strand, within RR42_RS16615 at 3602.043 kb on - strand, within RR42_RS16615 at 3602.156 kb on - strand, within RR42_RS16615 at 3602.232 kb on + strand at 3602.256 kb on + strand at 3602.257 kb on - strand at 3602.401 kb on + strand, within RR42_RS16620 at 3602.402 kb on - strand, within RR42_RS16620 at 3602.414 kb on + strand, within RR42_RS16620 at 3602.415 kb on - strand, within RR42_RS16620 at 3602.431 kb on + strand at 3602.500 kb on - strand at 3602.627 kb on + strand at 3602.627 kb on + strand at 3602.628 kb on - strand at 3602.628 kb on - strand at 3602.628 kb on - strand at 3602.684 kb on - strand at 3602.684 kb on - strand at 3602.784 kb on + strand at 3602.785 kb on - strand at 3602.785 kb on - strand at 3602.822 kb on + strand at 3602.822 kb on + strand at 3602.823 kb on - strand at 3602.826 kb on - strand at 3602.826 kb on - strand at 3602.924 kb on - strand at 3602.954 kb on + strand, within RR42_RS16625 at 3602.955 kb on - strand, within RR42_RS16625 at 3603.057 kb on + strand, within RR42_RS16625 at 3603.058 kb on - strand, within RR42_RS16625 at 3603.349 kb on - strand, within RR42_RS16625 at 3603.383 kb on + strand, within RR42_RS16625 at 3603.384 kb on - strand, within RR42_RS16625
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (C) remove 3,601,420 - RR42_RS16615 0.16 -0.4 3,601,420 - RR42_RS16615 0.16 +0.3 3,601,456 + RR42_RS16615 0.19 -0.8 3,601,456 + RR42_RS16615 0.19 -0.5 3,601,489 + RR42_RS16615 0.23 +0.1 3,601,525 - RR42_RS16615 0.26 +0.3 3,601,537 + RR42_RS16615 0.28 +1.1 3,601,550 + RR42_RS16615 0.29 -1.1 3,601,551 - RR42_RS16615 0.29 -0.9 3,601,603 - RR42_RS16615 0.34 +0.1 3,601,671 - RR42_RS16615 0.41 +0.5 3,601,778 + RR42_RS16615 0.52 +0.3 3,601,841 + RR42_RS16615 0.58 +0.5 3,602,019 - RR42_RS16615 0.76 +0.2 3,602,019 - RR42_RS16615 0.76 +0.5 3,602,042 + RR42_RS16615 0.78 +0.8 3,602,042 + RR42_RS16615 0.78 -2.0 3,602,043 - RR42_RS16615 0.78 +0.0 3,602,156 - RR42_RS16615 0.90 -0.6 3,602,232 + +0.4 3,602,256 + -1.7 3,602,257 - +0.1 3,602,401 + RR42_RS16620 0.78 -0.1 3,602,402 - RR42_RS16620 0.79 -1.0 3,602,414 + RR42_RS16620 0.85 -1.0 3,602,415 - RR42_RS16620 0.86 -0.6 3,602,431 + -0.5 3,602,500 - +0.8 3,602,627 + +1.0 3,602,627 + +0.3 3,602,628 - +1.1 3,602,628 - +0.5 3,602,628 - +0.5 3,602,684 - -0.4 3,602,684 - +0.4 3,602,784 + -1.2 3,602,785 - +0.4 3,602,785 - +0.6 3,602,822 + +0.5 3,602,822 + -0.6 3,602,823 - +2.4 3,602,826 - +0.7 3,602,826 - -0.0 3,602,924 - +0.2 3,602,954 + RR42_RS16625 0.11 +0.2 3,602,955 - RR42_RS16625 0.11 +2.4 3,603,057 + RR42_RS16625 0.22 +0.2 3,603,058 - RR42_RS16625 0.22 +0.4 3,603,349 - RR42_RS16625 0.54 +0.4 3,603,383 + RR42_RS16625 0.58 +0.1 3,603,384 - RR42_RS16625 0.58 -1.4
Or see this region's nucleotide sequence