Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS16025

Experiment: L-Asparagine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS16020 and RR42_RS16025 are separated by 203 nucleotidesRR42_RS16025 and RR42_RS16030 overlap by 4 nucleotidesRR42_RS16030 and RR42_RS16035 are separated by 67 nucleotides RR42_RS16020: RR42_RS16020 - methionyl-tRNA synthetase, at 3,465,576 to 3,467,645 _RS16020 RR42_RS16025: RR42_RS16025 - sulfate transporter, at 3,467,849 to 3,469,639 _RS16025 RR42_RS16030: RR42_RS16030 - lipoprotein, at 3,469,636 to 3,470,178 _RS16030 RR42_RS16035: RR42_RS16035 - gramicidin biosynthesis protein GrsT, at 3,470,246 to 3,474,334 _RS16035 Position (kb) 3467 3468 3469 3470Strain fitness (log2 ratio) -2 -1 0 1 2at 3467.734 kb on + strandat 3467.910 kb on - strandat 3468.230 kb on - strand, within RR42_RS16025at 3468.576 kb on + strand, within RR42_RS16025at 3468.576 kb on + strand, within RR42_RS16025at 3468.640 kb on + strand, within RR42_RS16025at 3468.640 kb on + strand, within RR42_RS16025at 3469.022 kb on + strand, within RR42_RS16025at 3469.022 kb on + strand, within RR42_RS16025at 3469.022 kb on + strand, within RR42_RS16025at 3469.022 kb on + strand, within RR42_RS16025at 3469.023 kb on - strand, within RR42_RS16025at 3469.023 kb on - strand, within RR42_RS16025at 3469.023 kb on - strand, within RR42_RS16025at 3469.051 kb on + strand, within RR42_RS16025at 3469.051 kb on + strand, within RR42_RS16025at 3469.051 kb on + strand, within RR42_RS16025at 3469.052 kb on - strand, within RR42_RS16025at 3469.052 kb on - strand, within RR42_RS16025at 3469.052 kb on - strand, within RR42_RS16025at 3469.052 kb on - strand, within RR42_RS16025at 3469.052 kb on - strand, within RR42_RS16025at 3469.091 kb on + strand, within RR42_RS16025at 3469.091 kb on + strand, within RR42_RS16025at 3469.091 kb on + strand, within RR42_RS16025at 3469.092 kb on - strand, within RR42_RS16025at 3469.159 kb on - strand, within RR42_RS16025at 3469.190 kb on + strand, within RR42_RS16025at 3469.191 kb on - strand, within RR42_RS16025at 3469.191 kb on - strand, within RR42_RS16025at 3469.191 kb on - strand, within RR42_RS16025at 3469.191 kb on - strand, within RR42_RS16025at 3469.289 kb on + strand, within RR42_RS16025at 3469.289 kb on + strand, within RR42_RS16025at 3469.289 kb on + strand, within RR42_RS16025at 3469.559 kb on + strandat 3469.560 kb on - strandat 3469.791 kb on + strand, within RR42_RS16030at 3469.791 kb on + strand, within RR42_RS16030at 3469.792 kb on - strand, within RR42_RS16030at 3469.792 kb on - strand, within RR42_RS16030at 3470.566 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (C)
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3,467,734 + -2.3
3,467,910 - -1.1
3,468,230 - RR42_RS16025 0.21 -2.0
3,468,576 + RR42_RS16025 0.41 -0.6
3,468,576 + RR42_RS16025 0.41 +1.1
3,468,640 + RR42_RS16025 0.44 -0.6
3,468,640 + RR42_RS16025 0.44 -1.1
3,469,022 + RR42_RS16025 0.65 -0.2
3,469,022 + RR42_RS16025 0.65 -0.5
3,469,022 + RR42_RS16025 0.65 -0.3
3,469,022 + RR42_RS16025 0.65 -0.0
3,469,023 - RR42_RS16025 0.66 -0.6
3,469,023 - RR42_RS16025 0.66 +0.4
3,469,023 - RR42_RS16025 0.66 -0.3
3,469,051 + RR42_RS16025 0.67 -1.0
3,469,051 + RR42_RS16025 0.67 -0.3
3,469,051 + RR42_RS16025 0.67 +0.4
3,469,052 - RR42_RS16025 0.67 +0.3
3,469,052 - RR42_RS16025 0.67 -0.8
3,469,052 - RR42_RS16025 0.67 +2.6
3,469,052 - RR42_RS16025 0.67 -1.0
3,469,052 - RR42_RS16025 0.67 -0.2
3,469,091 + RR42_RS16025 0.69 +0.3
3,469,091 + RR42_RS16025 0.69 -0.3
3,469,091 + RR42_RS16025 0.69 -0.1
3,469,092 - RR42_RS16025 0.69 +0.1
3,469,159 - RR42_RS16025 0.73 +1.1
3,469,190 + RR42_RS16025 0.75 -0.8
3,469,191 - RR42_RS16025 0.75 -0.6
3,469,191 - RR42_RS16025 0.75 -0.2
3,469,191 - RR42_RS16025 0.75 -1.0
3,469,191 - RR42_RS16025 0.75 -0.8
3,469,289 + RR42_RS16025 0.80 -0.4
3,469,289 + RR42_RS16025 0.80 -0.1
3,469,289 + RR42_RS16025 0.80 -0.6
3,469,559 + -0.3
3,469,560 - -1.7
3,469,791 + RR42_RS16030 0.29 +0.1
3,469,791 + RR42_RS16030 0.29 -0.2
3,469,792 - RR42_RS16030 0.29 +0.0
3,469,792 - RR42_RS16030 0.29 -0.1
3,470,566 + +0.6

Or see this region's nucleotide sequence