Experiment: L-Asparagine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS16020 and RR42_RS16025 are separated by 203 nucleotides RR42_RS16025 and RR42_RS16030 overlap by 4 nucleotides RR42_RS16030 and RR42_RS16035 are separated by 67 nucleotides
RR42_RS16020: RR42_RS16020 - methionyl-tRNA synthetase, at 3,465,576 to 3,467,645
_RS16020
RR42_RS16025: RR42_RS16025 - sulfate transporter, at 3,467,849 to 3,469,639
_RS16025
RR42_RS16030: RR42_RS16030 - lipoprotein, at 3,469,636 to 3,470,178
_RS16030
RR42_RS16035: RR42_RS16035 - gramicidin biosynthesis protein GrsT, at 3,470,246 to 3,474,334
_RS16035
Position (kb)
3467
3468
3469
3470 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3467.734 kb on + strand at 3467.910 kb on - strand at 3468.230 kb on - strand, within RR42_RS16025 at 3468.576 kb on + strand, within RR42_RS16025 at 3468.576 kb on + strand, within RR42_RS16025 at 3468.640 kb on + strand, within RR42_RS16025 at 3468.640 kb on + strand, within RR42_RS16025 at 3469.022 kb on + strand, within RR42_RS16025 at 3469.022 kb on + strand, within RR42_RS16025 at 3469.022 kb on + strand, within RR42_RS16025 at 3469.022 kb on + strand, within RR42_RS16025 at 3469.023 kb on - strand, within RR42_RS16025 at 3469.023 kb on - strand, within RR42_RS16025 at 3469.023 kb on - strand, within RR42_RS16025 at 3469.051 kb on + strand, within RR42_RS16025 at 3469.051 kb on + strand, within RR42_RS16025 at 3469.051 kb on + strand, within RR42_RS16025 at 3469.052 kb on - strand, within RR42_RS16025 at 3469.052 kb on - strand, within RR42_RS16025 at 3469.052 kb on - strand, within RR42_RS16025 at 3469.052 kb on - strand, within RR42_RS16025 at 3469.052 kb on - strand, within RR42_RS16025 at 3469.091 kb on + strand, within RR42_RS16025 at 3469.091 kb on + strand, within RR42_RS16025 at 3469.091 kb on + strand, within RR42_RS16025 at 3469.092 kb on - strand, within RR42_RS16025 at 3469.159 kb on - strand, within RR42_RS16025 at 3469.190 kb on + strand, within RR42_RS16025 at 3469.191 kb on - strand, within RR42_RS16025 at 3469.191 kb on - strand, within RR42_RS16025 at 3469.191 kb on - strand, within RR42_RS16025 at 3469.191 kb on - strand, within RR42_RS16025 at 3469.289 kb on + strand, within RR42_RS16025 at 3469.289 kb on + strand, within RR42_RS16025 at 3469.289 kb on + strand, within RR42_RS16025 at 3469.559 kb on + strand at 3469.560 kb on - strand at 3469.791 kb on + strand, within RR42_RS16030 at 3469.791 kb on + strand, within RR42_RS16030 at 3469.792 kb on - strand, within RR42_RS16030 at 3469.792 kb on - strand, within RR42_RS16030 at 3470.566 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (C) remove 3,467,734 + -2.3 3,467,910 - -1.1 3,468,230 - RR42_RS16025 0.21 -2.0 3,468,576 + RR42_RS16025 0.41 -0.6 3,468,576 + RR42_RS16025 0.41 +1.1 3,468,640 + RR42_RS16025 0.44 -0.6 3,468,640 + RR42_RS16025 0.44 -1.1 3,469,022 + RR42_RS16025 0.65 -0.2 3,469,022 + RR42_RS16025 0.65 -0.5 3,469,022 + RR42_RS16025 0.65 -0.3 3,469,022 + RR42_RS16025 0.65 -0.0 3,469,023 - RR42_RS16025 0.66 -0.6 3,469,023 - RR42_RS16025 0.66 +0.4 3,469,023 - RR42_RS16025 0.66 -0.3 3,469,051 + RR42_RS16025 0.67 -1.0 3,469,051 + RR42_RS16025 0.67 -0.3 3,469,051 + RR42_RS16025 0.67 +0.4 3,469,052 - RR42_RS16025 0.67 +0.3 3,469,052 - RR42_RS16025 0.67 -0.8 3,469,052 - RR42_RS16025 0.67 +2.6 3,469,052 - RR42_RS16025 0.67 -1.0 3,469,052 - RR42_RS16025 0.67 -0.2 3,469,091 + RR42_RS16025 0.69 +0.3 3,469,091 + RR42_RS16025 0.69 -0.3 3,469,091 + RR42_RS16025 0.69 -0.1 3,469,092 - RR42_RS16025 0.69 +0.1 3,469,159 - RR42_RS16025 0.73 +1.1 3,469,190 + RR42_RS16025 0.75 -0.8 3,469,191 - RR42_RS16025 0.75 -0.6 3,469,191 - RR42_RS16025 0.75 -0.2 3,469,191 - RR42_RS16025 0.75 -1.0 3,469,191 - RR42_RS16025 0.75 -0.8 3,469,289 + RR42_RS16025 0.80 -0.4 3,469,289 + RR42_RS16025 0.80 -0.1 3,469,289 + RR42_RS16025 0.80 -0.6 3,469,559 + -0.3 3,469,560 - -1.7 3,469,791 + RR42_RS16030 0.29 +0.1 3,469,791 + RR42_RS16030 0.29 -0.2 3,469,792 - RR42_RS16030 0.29 +0.0 3,469,792 - RR42_RS16030 0.29 -0.1 3,470,566 + +0.6
Or see this region's nucleotide sequence