Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS12125

Experiment: L-Asparagine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS12120 and RR42_RS12125 are separated by 138 nucleotidesRR42_RS12125 and RR42_RS12130 are separated by 818 nucleotides RR42_RS12120: RR42_RS12120 - hypothetical protein, at 2,597,678 to 2,600,791 _RS12120 RR42_RS12125: RR42_RS12125 - LuxR family transcriptional regulator, at 2,600,930 to 2,601,580 _RS12125 RR42_RS12130: RR42_RS12130 - hypothetical protein, at 2,602,399 to 2,603,028 _RS12130 Position (kb) 2600 2601 2602Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 2600.024 kb on + strand, within RR42_RS12120at 2600.144 kb on - strand, within RR42_RS12120at 2600.225 kb on - strand, within RR42_RS12120at 2600.416 kb on + strand, within RR42_RS12120at 2600.416 kb on + strand, within RR42_RS12120at 2600.556 kb on + strandat 2600.637 kb on + strandat 2600.638 kb on - strandat 2600.717 kb on - strandat 2600.728 kb on + strandat 2600.774 kb on + strandat 2600.848 kb on + strandat 2600.848 kb on + strandat 2600.952 kb on + strandat 2600.952 kb on + strandat 2600.953 kb on - strandat 2601.317 kb on + strand, within RR42_RS12125at 2601.318 kb on - strand, within RR42_RS12125at 2601.408 kb on - strand, within RR42_RS12125at 2601.562 kb on + strandat 2601.789 kb on + strandat 2601.789 kb on + strandat 2601.789 kb on + strandat 2601.790 kb on - strandat 2601.793 kb on - strandat 2601.924 kb on - strandat 2602.024 kb on - strandat 2602.032 kb on + strandat 2602.234 kb on + strandat 2602.303 kb on - strandat 2602.394 kb on + strandat 2602.394 kb on + strandat 2602.395 kb on - strandat 2602.395 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (C)
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2,600,024 + RR42_RS12120 0.75 -0.0
2,600,144 - RR42_RS12120 0.79 +1.3
2,600,225 - RR42_RS12120 0.82 -0.1
2,600,416 + RR42_RS12120 0.88 +0.3
2,600,416 + RR42_RS12120 0.88 +0.6
2,600,556 + +0.3
2,600,637 + +0.3
2,600,638 - +0.6
2,600,717 - -0.1
2,600,728 + -0.4
2,600,774 + +0.5
2,600,848 + -1.3
2,600,848 + +1.3
2,600,952 + -1.3
2,600,952 + +0.5
2,600,953 - +0.4
2,601,317 + RR42_RS12125 0.59 +0.4
2,601,318 - RR42_RS12125 0.60 -0.4
2,601,408 - RR42_RS12125 0.73 +1.1
2,601,562 + -0.4
2,601,789 + +0.3
2,601,789 + +1.5
2,601,789 + -1.2
2,601,790 - -1.1
2,601,793 - +1.1
2,601,924 - -0.2
2,602,024 - +0.1
2,602,032 + +1.0
2,602,234 + +0.2
2,602,303 - -1.9
2,602,394 + -0.8
2,602,394 + -0.7
2,602,395 - +0.2
2,602,395 - +4.3

Or see this region's nucleotide sequence