Experiment: L-Asparagine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS10285 and RR42_RS10290 are separated by 25 nucleotides RR42_RS10290 and RR42_RS10295 are separated by 31 nucleotides
RR42_RS10285: RR42_RS10285 - hypothetical protein, at 2,202,241 to 2,202,804
_RS10285
RR42_RS10290: RR42_RS10290 - hypothetical protein, at 2,202,830 to 2,203,444
_RS10290
RR42_RS10295: RR42_RS10295 - hypothetical protein, at 2,203,476 to 2,204,045
_RS10295
Position (kb)
2203
2204
2205 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2202.579 kb on - strand, within RR42_RS10285 at 2202.579 kb on - strand, within RR42_RS10285 at 2202.834 kb on + strand at 2202.834 kb on + strand at 2202.835 kb on - strand at 2202.870 kb on - strand at 2203.016 kb on + strand, within RR42_RS10290 at 2203.268 kb on + strand, within RR42_RS10290 at 2203.348 kb on - strand, within RR42_RS10290 at 2203.496 kb on - strand at 2203.539 kb on - strand, within RR42_RS10295 at 2203.539 kb on - strand, within RR42_RS10295 at 2203.539 kb on - strand, within RR42_RS10295 at 2203.653 kb on + strand, within RR42_RS10295 at 2203.654 kb on - strand, within RR42_RS10295 at 2203.783 kb on + strand, within RR42_RS10295 at 2203.783 kb on + strand, within RR42_RS10295 at 2203.851 kb on - strand, within RR42_RS10295 at 2203.912 kb on + strand, within RR42_RS10295 at 2203.912 kb on + strand, within RR42_RS10295 at 2203.913 kb on - strand, within RR42_RS10295 at 2203.942 kb on + strand, within RR42_RS10295 at 2204.001 kb on + strand at 2204.164 kb on + strand at 2204.165 kb on - strand at 2204.484 kb on + strand at 2204.484 kb on + strand at 2204.485 kb on - strand at 2204.489 kb on + strand at 2204.511 kb on - strand at 2204.603 kb on + strand at 2204.603 kb on + strand at 2204.683 kb on - strand at 2204.693 kb on - strand at 2204.759 kb on + strand at 2204.866 kb on - strand at 2204.906 kb on - strand at 2204.932 kb on + strand at 2204.963 kb on + strand at 2204.969 kb on + strand at 2204.970 kb on - strand at 2204.976 kb on - strand at 2204.993 kb on + strand at 2204.993 kb on + strand at 2205.020 kb on + strand at 2205.026 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (C) remove 2,202,579 - RR42_RS10285 0.60 -1.3 2,202,579 - RR42_RS10285 0.60 -0.1 2,202,834 + -0.2 2,202,834 + -0.5 2,202,835 - +0.8 2,202,870 - +1.0 2,203,016 + RR42_RS10290 0.30 -1.0 2,203,268 + RR42_RS10290 0.71 -0.0 2,203,348 - RR42_RS10290 0.84 +0.4 2,203,496 - +0.1 2,203,539 - RR42_RS10295 0.11 -0.3 2,203,539 - RR42_RS10295 0.11 -0.7 2,203,539 - RR42_RS10295 0.11 +0.6 2,203,653 + RR42_RS10295 0.31 +0.3 2,203,654 - RR42_RS10295 0.31 +0.5 2,203,783 + RR42_RS10295 0.54 -0.7 2,203,783 + RR42_RS10295 0.54 -0.8 2,203,851 - RR42_RS10295 0.66 +0.0 2,203,912 + RR42_RS10295 0.76 -0.4 2,203,912 + RR42_RS10295 0.76 -0.2 2,203,913 - RR42_RS10295 0.77 +0.7 2,203,942 + RR42_RS10295 0.82 +0.9 2,204,001 + +2.0 2,204,164 + +0.3 2,204,165 - +2.9 2,204,484 + +0.7 2,204,484 + +0.8 2,204,485 - -0.2 2,204,489 + +0.3 2,204,511 - -0.4 2,204,603 + +0.5 2,204,603 + +0.8 2,204,683 - -0.8 2,204,693 - +0.8 2,204,759 + -0.6 2,204,866 - -0.6 2,204,906 - -1.8 2,204,932 + -0.4 2,204,963 + +0.7 2,204,969 + -0.8 2,204,970 - -0.1 2,204,976 - -0.0 2,204,993 + -0.1 2,204,993 + -0.6 2,205,020 + +1.0 2,205,026 + -0.6
Or see this region's nucleotide sequence