Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS07155

Experiment: L-Asparagine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS07145 and RR42_RS07150 are separated by 27 nucleotidesRR42_RS07150 and RR42_RS07155 are separated by 72 nucleotidesRR42_RS07155 and RR42_RS07160 are separated by 59 nucleotidesRR42_RS07160 and RR42_RS07165 are separated by 1 nucleotides RR42_RS07145: RR42_RS07145 - hypothetical protein, at 1,530,968 to 1,532,830 _RS07145 RR42_RS07150: RR42_RS07150 - hypothetical protein, at 1,532,858 to 1,533,571 _RS07150 RR42_RS07155: RR42_RS07155 - hypothetical protein, at 1,533,644 to 1,534,405 _RS07155 RR42_RS07160: RR42_RS07160 - hypothetical protein, at 1,534,465 to 1,535,247 _RS07160 RR42_RS07165: RR42_RS07165 - hypothetical protein, at 1,535,249 to 1,535,467 _RS07165 Position (kb) 1533 1534 1535Strain fitness (log2 ratio) -1 0 1at 1532.768 kb on + strandat 1532.857 kb on + strandat 1533.195 kb on - strand, within RR42_RS07150at 1533.633 kb on - strandat 1533.640 kb on - strandat 1533.640 kb on - strandat 1533.719 kb on + strandat 1533.720 kb on - strandat 1533.941 kb on - strand, within RR42_RS07155at 1534.281 kb on - strand, within RR42_RS07155at 1534.344 kb on - strandat 1534.429 kb on + strandat 1534.462 kb on - strandat 1534.690 kb on + strand, within RR42_RS07160at 1534.756 kb on + strand, within RR42_RS07160at 1534.756 kb on + strand, within RR42_RS07160at 1534.757 kb on - strand, within RR42_RS07160at 1534.809 kb on - strand, within RR42_RS07160at 1535.052 kb on - strand, within RR42_RS07160

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (C)
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1,532,768 + -1.2
1,532,857 + -0.6
1,533,195 - RR42_RS07150 0.47 +0.5
1,533,633 - +0.0
1,533,640 - -0.1
1,533,640 - -0.4
1,533,719 + -1.0
1,533,720 - +0.5
1,533,941 - RR42_RS07155 0.39 +0.8
1,534,281 - RR42_RS07155 0.84 +0.8
1,534,344 - +0.7
1,534,429 + -0.1
1,534,462 - +1.0
1,534,690 + RR42_RS07160 0.29 -0.2
1,534,756 + RR42_RS07160 0.37 -0.3
1,534,756 + RR42_RS07160 0.37 +0.3
1,534,757 - RR42_RS07160 0.37 -0.2
1,534,809 - RR42_RS07160 0.44 +0.2
1,535,052 - RR42_RS07160 0.75 -0.5

Or see this region's nucleotide sequence