Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS06855

Experiment: L-Asparagine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS06855 and RR42_RS06860 are separated by 528 nucleotides RR42_RS06855: RR42_RS06855 - hypothetical protein, at 1,480,936 to 1,481,148 _RS06855 RR42_RS06860: RR42_RS06860 - hypothetical protein, at 1,481,677 to 1,481,871 _RS06860 Position (kb) 1480 1481 1482Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1480.119 kb on + strandat 1480.142 kb on - strandat 1480.142 kb on - strandat 1480.142 kb on - strandat 1480.153 kb on + strandat 1480.153 kb on + strandat 1480.154 kb on - strandat 1480.173 kb on + strandat 1480.335 kb on + strandat 1480.414 kb on - strandat 1480.414 kb on - strandat 1480.494 kb on + strandat 1480.495 kb on - strandat 1480.517 kb on + strandat 1480.556 kb on - strandat 1480.692 kb on + strandat 1480.693 kb on - strandat 1480.693 kb on - strandat 1480.968 kb on - strand, within RR42_RS06855at 1481.047 kb on - strand, within RR42_RS06855at 1481.047 kb on - strand, within RR42_RS06855at 1481.054 kb on - strand, within RR42_RS06855at 1481.054 kb on - strand, within RR42_RS06855at 1481.108 kb on - strand, within RR42_RS06855at 1481.213 kb on - strandat 1481.381 kb on - strandat 1481.440 kb on - strandat 1481.611 kb on - strandat 1481.611 kb on - strandat 1481.611 kb on - strandat 1481.669 kb on + strandat 1481.811 kb on - strand, within RR42_RS06860at 1481.811 kb on - strand, within RR42_RS06860at 1481.858 kb on - strandat 1481.908 kb on - strandat 1481.966 kb on - strandat 1482.033 kb on - strandat 1482.033 kb on - strandat 1482.033 kb on - strandat 1482.038 kb on - strandat 1482.046 kb on - strandat 1482.046 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (C)
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1,480,119 + +1.2
1,480,142 - +0.3
1,480,142 - -0.0
1,480,142 - -0.2
1,480,153 + +0.1
1,480,153 + +0.1
1,480,154 - -0.6
1,480,173 + +0.3
1,480,335 + -0.2
1,480,414 - -0.8
1,480,414 - +0.9
1,480,494 + +0.2
1,480,495 - -0.8
1,480,517 + -2.6
1,480,556 - -1.7
1,480,692 + -1.6
1,480,693 - -0.0
1,480,693 - -1.7
1,480,968 - RR42_RS06855 0.15 +0.9
1,481,047 - RR42_RS06855 0.52 +0.9
1,481,047 - RR42_RS06855 0.52 +0.3
1,481,054 - RR42_RS06855 0.55 -0.1
1,481,054 - RR42_RS06855 0.55 +0.3
1,481,108 - RR42_RS06855 0.81 -0.4
1,481,213 - +1.0
1,481,381 - -1.1
1,481,440 - +0.5
1,481,611 - -1.2
1,481,611 - -0.4
1,481,611 - +1.0
1,481,669 + -3.1
1,481,811 - RR42_RS06860 0.69 +0.4
1,481,811 - RR42_RS06860 0.69 -0.1
1,481,858 - -1.2
1,481,908 - -0.5
1,481,966 - -1.0
1,482,033 - -1.2
1,482,033 - +0.4
1,482,033 - +3.2
1,482,038 - +0.3
1,482,046 - -0.3
1,482,046 - -1.8

Or see this region's nucleotide sequence