Experiment: L-Asparagine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS05920 and RR42_RS05925 are separated by 117 nucleotides RR42_RS05925 and RR42_RS05930 are separated by 33 nucleotides RR42_RS05930 and RR42_RS05935 are separated by 41 nucleotides RR42_RS05935 and RR42_RS05940 are separated by 274 nucleotides
RR42_RS05920: RR42_RS05920 - HrcA family transcriptional regulator, at 1,304,967 to 1,306,004
_RS05920
RR42_RS05925: RR42_RS05925 - ferrochelatase, at 1,306,122 to 1,307,237
_RS05925
RR42_RS05930: RR42_RS05930 - RNA-binding protein S4, at 1,307,271 to 1,307,666
_RS05930
RR42_RS05935: RR42_RS05935 - membrane protein, at 1,307,708 to 1,307,863
_RS05935
RR42_RS05940: RR42_RS05940 - co-chaperone GrpE, at 1,308,138 to 1,308,695
_RS05940
Position (kb) 1306
1307
1308 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1305.426 kb on - strand, within RR42_RS05920 at 1305.480 kb on + strand, within RR42_RS05920 at 1305.596 kb on + strand, within RR42_RS05920 at 1305.596 kb on + strand, within RR42_RS05920 at 1305.596 kb on + strand, within RR42_RS05920 at 1305.596 kb on + strand, within RR42_RS05920 at 1305.597 kb on - strand, within RR42_RS05920 at 1305.876 kb on + strand, within RR42_RS05920 at 1306.002 kb on + strand at 1306.002 kb on + strand at 1306.002 kb on + strand at 1306.003 kb on - strand at 1306.003 kb on - strand at 1306.003 kb on - strand at 1306.003 kb on - strand at 1306.003 kb on - strand at 1306.146 kb on + strand at 1307.278 kb on + strand at 1307.279 kb on - strand at 1307.279 kb on - strand at 1307.529 kb on + strand, within RR42_RS05930 at 1307.530 kb on - strand, within RR42_RS05930 at 1307.588 kb on + strand, within RR42_RS05930 at 1307.588 kb on + strand, within RR42_RS05930 at 1307.589 kb on - strand, within RR42_RS05930 at 1307.730 kb on + strand, within RR42_RS05935 at 1307.731 kb on - strand, within RR42_RS05935 at 1307.731 kb on - strand, within RR42_RS05935 at 1307.731 kb on - strand, within RR42_RS05935 at 1307.731 kb on - strand, within RR42_RS05935 at 1307.742 kb on - strand, within RR42_RS05935 at 1307.760 kb on + strand, within RR42_RS05935 at 1307.820 kb on - strand, within RR42_RS05935 at 1307.857 kb on + strand at 1307.857 kb on + strand at 1307.857 kb on + strand at 1307.858 kb on - strand at 1307.858 kb on - strand at 1307.858 kb on - strand at 1307.858 kb on - strand at 1307.968 kb on + strand at 1307.968 kb on + strand at 1307.968 kb on + strand at 1307.968 kb on + strand at 1307.969 kb on - strand at 1307.969 kb on - strand at 1307.969 kb on - strand at 1307.969 kb on - strand at 1307.977 kb on + strand at 1307.978 kb on - strand at 1307.999 kb on + strand at 1308.070 kb on - strand at 1308.070 kb on - strand at 1308.071 kb on + strand at 1308.071 kb on + strand at 1308.071 kb on + strand at 1308.071 kb on + strand at 1308.071 kb on + strand at 1308.125 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (C) remove 1,305,426 - RR42_RS05920 0.44 -1.0 1,305,480 + RR42_RS05920 0.49 -3.0 1,305,596 + RR42_RS05920 0.61 -1.4 1,305,596 + RR42_RS05920 0.61 -0.4 1,305,596 + RR42_RS05920 0.61 +0.0 1,305,596 + RR42_RS05920 0.61 -1.3 1,305,597 - RR42_RS05920 0.61 -0.7 1,305,876 + RR42_RS05920 0.88 +0.7 1,306,002 + +0.5 1,306,002 + -0.4 1,306,002 + -2.4 1,306,003 - +0.8 1,306,003 - -2.4 1,306,003 - -0.8 1,306,003 - +1.1 1,306,003 - -0.3 1,306,146 + +0.5 1,307,278 + -0.4 1,307,279 - -0.4 1,307,279 - -0.6 1,307,529 + RR42_RS05930 0.65 -0.0 1,307,530 - RR42_RS05930 0.65 +2.9 1,307,588 + RR42_RS05930 0.80 -0.3 1,307,588 + RR42_RS05930 0.80 +0.1 1,307,589 - RR42_RS05930 0.80 -0.6 1,307,730 + RR42_RS05935 0.14 -0.0 1,307,731 - RR42_RS05935 0.15 -0.7 1,307,731 - RR42_RS05935 0.15 -0.9 1,307,731 - RR42_RS05935 0.15 +0.2 1,307,731 - RR42_RS05935 0.15 -0.0 1,307,742 - RR42_RS05935 0.22 +0.3 1,307,760 + RR42_RS05935 0.33 -0.2 1,307,820 - RR42_RS05935 0.72 +0.3 1,307,857 + -0.0 1,307,857 + -1.4 1,307,857 + -0.6 1,307,858 - -0.7 1,307,858 - -0.6 1,307,858 - -0.1 1,307,858 - -0.0 1,307,968 + -0.5 1,307,968 + -0.5 1,307,968 + -0.8 1,307,968 + +0.1 1,307,969 - +0.2 1,307,969 - +0.0 1,307,969 - -0.4 1,307,969 - -0.1 1,307,977 + +0.8 1,307,978 - -0.9 1,307,999 + +0.8 1,308,070 - +0.4 1,308,070 - -0.4 1,308,071 + +0.3 1,308,071 + +0.6 1,308,071 + +0.6 1,308,071 + -0.3 1,308,071 + +0.0 1,308,125 + -0.4
Or see this region's nucleotide sequence